Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 0.0e+00 1149.8 617 100.0
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 6.0e-216 754.6 447 84.3
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.2e-208 730.3 455 82.0
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.8e-196 689.9 451 76.1
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 2.0e-195 686.4 456 77.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 4.6e-192 675.2 461 74.0
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 8.7e-191 671.0 461 73.8
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.1e-190 670.6 442 76.0
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 3.7e-189 665.6 401 81.0
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.5e-184 649.0 462 70.8
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 1.5e-182 643.7 399 77.4
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.5e-179 633.6 441 71.4
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 2.0e-179 633.3 388 77.8
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.7e-178 630.2 377 78.2
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 2.9e-178 629.4 377 78.8
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 6.5e-178 628.2 377 78.0
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 8.4e-178 627.9 441 71.2
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 4.2e-177 625.5 445 69.9
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 7.1e-177 624.8 399 75.2
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 7.1e-177 624.8 420 72.4
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.2e-176 624.0 378 78.8
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 1.6e-176 623.6 377 78.0
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 2.1e-176 623.2 368 79.6
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 2.7e-176 622.9 377 76.9
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 4.6e-176 622.1 377 77.5
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.3e-175 620.5 414 73.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.9e-174 616.7 389 73.5
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.9e-174 616.7 389 73.5
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.5e-174 616.3 433 70.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.3e-173 614.0 377 76.4
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 4.8e-173 612.1 414 72.5
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.1e-172 610.9 378 76.7
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.4e-172 610.5 376 76.1
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.8e-172 610.1 394 73.1
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 4.1e-172 609.0 377 77.2
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 6.9e-172 608.2 370 78.4
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 6.9e-172 608.2 378 76.5
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 6.9e-172 608.2 377 78.2
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.2e-171 607.4 378 76.5
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 1.2e-171 607.4 378 76.2
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.2e-171 607.4 377 75.3
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.2e-171 607.4 377 75.3
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.2e-171 607.4 385 75.1
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 2.0e-171 606.7 378 75.9
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 3.4e-171 605.9 378 77.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 3.4e-171 605.9 370 77.3
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.4e-171 605.9 397 72.0
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.3e-170 604.0 378 74.6
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.7e-170 603.6 397 71.5
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.4e-169 600.5 397 71.0
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 3.6e-168 595.9 376 75.8
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 3.6e-168 595.9 376 75.8
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 6.1e-168 595.1 466 61.8
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.8e-167 593.6 380 75.0
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 8.8e-167 591.3 380 74.7
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.5e-166 590.5 396 71.7
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 2.0e-166 590.1 444 64.9
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 2.0e-166 590.1 376 75.3
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.5e-166 589.7 396 71.7
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.5e-166 589.7 380 74.5
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 2.5e-166 589.7 383 73.4
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 7.4e-166 588.2 378 75.1
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.3e-165 587.4 380 73.9
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 6.3e-165 585.1 373 74.3
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 6.3e-165 585.1 380 73.7
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.1e-164 584.3 483 62.5
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.4e-164 583.9 399 71.2
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.8e-164 583.6 380 73.4
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.1e-164 582.4 379 73.9
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 5.3e-164 582.0 383 72.6
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 6.9e-164 581.6 389 72.2
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 1.7e-162 577.0 371 73.6
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 2.9e-162 576.2 385 73.5
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 6.5e-162 575.1 378 73.0
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.4e-161 573.9 378 72.5
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.5e-161 573.2 377 72.1
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.5e-161 572.0 378 73.3
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.7e-160 569.7 414 68.8
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 7.9e-160 568.2 414 68.1
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.3e-159 566.6 390 71.0
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.5e-158 563.9 446 63.9
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.5e-158 563.9 379 72.8
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 4.4e-158 562.4 417 68.8
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.7e-157 560.5 391 69.1
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 4.5e-155 552.4 358 74.6
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 9.4e-153 544.7 370 71.1
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 4.7e-152 542.3 380 69.5
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 8.8e-151 538.1 371 72.5
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.3e-149 534.3 341 71.8
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 2.2e-149 533.5 368 70.9
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 5.3e-148 528.9 359 68.8
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 7.0e-148 528.5 395 67.3
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.2e-147 527.7 359 68.5
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.6e-147 527.3 459 58.6
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.0e-143 514.6 390 66.2
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.2e-142 511.1 359 66.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 9.8e-142 508.1 404 63.9
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.3e-141 507.7 404 63.9
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 3.5e-139 499.6 286 80.4
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 4.2e-137 492.7 384 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 4.9e-133 479.2 369 62.9
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-130 470.7 339 64.3
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.4e-124 451.1 389 57.6
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.2e-118 431.4 357 56.6
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 8.6e-114 415.2 247 75.7
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 4.9e-109 399.4 294 60.5
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.1e-97 361.7 244 68.4
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 5.2e-95 352.8 213 75.6
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 2.0e-94 350.9 370 54.6
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.9e-89 334.3 188 79.3
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.2e-76 290.4 230 61.3
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.6e-73 279.6 204 57.8
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-72 278.1 204 56.9
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.1e-71 273.9 204 56.4
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.1e-71 273.9 204 56.4
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.1e-68 265.4 292 45.5
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.0e-66 258.8 342 41.8
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.5e-52 211.1 210 50.5
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 7.0e-39 166.4 141 66.7
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.7e-35 153.7 98 60.2
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 5.7e-17 93.6 97 58.8
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.7e-13 82.0 88 55.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.0e-10 72.8 274 22.6
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.4e-10 72.4 263 22.4
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.4e-10 72.4 245 23.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.4e-10 72.4 283 22.3
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.8e-10 72.0 261 21.8
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.8e-10 72.0 261 21.8
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.8e-10 72.0 252 23.4
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 3.0e-10 71.2 53 60.4
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 5.2e-10 70.5 271 22.9
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 5.2e-10 70.5 287 21.6
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.8e-10 70.1 270 20.7
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 8.9e-10 69.7 237 20.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 8.9e-10 69.7 268 19.4
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 8.9e-10 69.7 275 23.3
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.2e-09 69.3 245 22.0
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.2e-09 69.3 287 22.6
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 1.5e-09 68.9 240 23.3
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.5e-09 68.9 236 23.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.5e-09 68.9 297 19.5
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.5e-09 68.9 297 19.5
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 2.0e-09 68.6 232 21.6
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.6e-09 68.2 272 21.7
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.4e-09 67.8 295 19.0
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 3.4e-09 67.8 267 19.1
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 4.4e-09 67.4 238 20.6
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 4.4e-09 67.4 295 18.6
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 4.4e-09 67.4 273 23.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 7.5e-09 66.6 234 20.9
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 7.5e-09 66.6 269 22.7
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 9.8e-09 66.2 158 24.1
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 1.3e-08 65.9 160 23.8
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 1.3e-08 65.9 240 22.5
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 1.3e-08 65.9 238 20.6
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.7e-08 65.5 240 22.9
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.7e-08 65.5 232 24.6
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.2e-08 65.1 158 24.7
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 2.2e-08 65.1 274 22.6
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 2.2e-08 65.1 272 22.4
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 2.9e-08 64.7 234 21.8
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.9e-08 64.7 297 19.5
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 3.7e-08 64.3 160 24.4
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.7e-08 64.3 234 21.4
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.7e-08 64.3 234 21.4
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 4.9e-08 63.9 158 22.8
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 4.9e-08 63.9 158 22.8
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 4.9e-08 63.9 160 23.1
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 4.9e-08 63.9 158 24.7
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 6.4e-08 63.5 160 23.1
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 6.4e-08 63.5 140 25.0
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 8.3e-08 63.2 235 21.3
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 1.1e-07 62.8 158 22.2
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.1e-07 62.8 294 22.8
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.8e-07 62.0 139 25.2
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.8e-07 62.0 139 25.2
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.8e-07 62.0 137 23.4
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.8e-07 62.0 158 22.8
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 2.4e-07 61.6 251 23.5
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.4e-07 61.6 242 21.1
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 3.2e-07 61.2 134 26.1
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 4.1e-07 60.8 137 22.6
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 4.1e-07 60.8 134 23.1
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 5.4e-07 60.5 131 22.9


User provided reference genes

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