Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4697 Trifolium pratense HOM05D003160 ORTHO05D010088 2.4e-114 415.6 224 100.0
Medtr7g117900 Medicago truncatula HOM05D003160 ORTHO05D010088 3.2e-66 255.8 228 67.5
Ca_09526_v3 Cicer arietinum L. HOM05D003160 ORTHO05D010088 1.3e-64 250.4 258 65.1
Glyma.19G257900 Glycine max HOM05D003160 ORTHO05D010088 3.3e-47 192.6 234 53.0
Psat3g001520 Pisum sativum HOM05D003160 ORTHO05D010088 9.6e-47 191.0 135 77.8
Lj1g0008335 Lotus japonicus HOM05D003160 ORTHO05D010088 1.6e-46 190.3 240 52.9
Phvul.006G115400 Phaseolus vulgaris HOM05D003160 ORTHO05D010088 1.8e-45 186.8 234 51.7
VMungo0540G0853 Vigna mungo HOM05D003160 ORTHO05D010088 5.3e-45 185.3 230 50.9
Lalb_Chr15g0076361 Lupinus albus HOM05D003160 ORTHO05D010088 2.0e-44 183.3 233 49.8
QL08p046202 Quercus lobata HOM05D003160 ORTHO05D010088 2.2e-35 153.3 234 43.6
QL08p046209 Quercus lobata HOM05D003160 ORTHO05D010088 3.8e-35 152.5 234 43.6
QL08p046215 Quercus lobata HOM05D003160 ORTHO05D010088 3.8e-35 152.5 234 43.6
Aqoxy7G00032 Aquilegia oxysepala HOM05D003160 ORTHO05D010088 3.5e-33 146.0 243 42.0
arahy.Tifrunner.gnm1.ann1.0W8RKK Arachis hypogaea HOM05D010811 ORTHO05D010088 5.1e-32 142.1 229 45.0
MELO3C006001.2 Cucumis melo HOM05D003160 ORTHO05D010088 5.1e-32 142.1 225 40.4
Nn1g00361 Nelumbo nucifera HOM05D000716 ORTHO05D004822 6.7e-32 141.7 227 41.9
Duzib138G0284 Durio zibethinus HOM05D003160 ORTHO05D010088 8.7e-32 141.4 232 42.2
PGSC0003DMG400007007 Solanum tuberosum HOM05D003160 ORTHO05D010088 8.7e-32 141.4 242 42.1
TAR374G0774 Trochodendron aralioides HOM05D003160 ORTHO05D010088 8.7e-32 141.4 230 41.7
arahy.Tifrunner.gnm1.ann1.ZR3V1T Arachis hypogaea HOM05D010811 ORTHO05D010088 2.5e-31 139.8 210 47.6
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 5.6e-31 138.7 234 40.2
Gohir.D12G117600 Gossypium hirsutum HOM05D003160 ORTHO05D010088 1.6e-30 137.1 235 41.7
Ciclev10021230m.g Citrus clementina HOM05D003160 ORTHO05D010088 2.1e-30 136.7 239 38.9
Nitab4.5_0003865g0070 Nicotiana tabacum HOM05D003160 ORTHO05D010088 8.1e-30 134.8 240 40.8
ClCG05G000620 Citrullus lanatus HOM05D001628 ORTHO05D001568 1.1e-29 134.4 218 39.9
Sabra14G0075100 Salix brachista HOM05D003160 ORTHO05D010088 2.4e-29 133.3 231 39.8
Manes.05G019500 Manihot esculenta HOM05D003160 ORTHO05D010088 4.0e-29 132.5 242 39.3
Gohir.A12G114100 Gossypium hirsutum HOM05D003160 ORTHO05D010088 5.3e-29 132.1 233 42.1
Gorai.008G127400 Gossypium raimondii HOM05D003160 ORTHO05D010088 9.0e-29 131.3 233 41.6
Sed0027763 Sechium edule HOM05D003160 ORTHO05D010088 9.0e-29 131.3 219 41.6
Potri.014G102100 Populus trichocarpa HOM05D003160 ORTHO05D010088 1.2e-28 131.0 234 40.6
Thecc.01G337400 Theobroma cacao HOM05D003160 ORTHO05D010088 1.2e-28 131.0 231 39.8
TWI59G0107 Tripterygium wilfordii HOM05D003160 ORTHO05D010088 3.4e-28 129.4 240 40.8
CANSAT56G1121 Cannabis sativa HOM05D003160 ORTHO05D010088 7.6e-28 128.3 227 40.5
CAN.G360.9 Capsicum annuum HOM05D003160 ORTHO05D010088 1.0e-27 127.9 236 39.0
Sopen05g028910 Solanum pennellii HOM05D003160 ORTHO05D010088 1.0e-27 127.9 253 38.3
CsaV3_3G007840 Cucumis sativus L. HOM05D000126 ORTHO05D003017 1.3e-27 127.5 189 41.3
PSO384G0028 Papaver somniferum HOM05D003160 ORTHO05D010088 3.8e-27 125.9 245 39.2
Solyc05g050500.1 Solanum lycopersicum HOM05D003160 ORTHO05D010088 3.8e-27 125.9 244 40.2
Dinv34236 Davidia involucrata HOM05D003160 ORTHO05D010088 7.1e-26 121.7 196 41.8
Atru.chr5.726 Acer truncatum HOM05D003160 ORTHO05D010088 2.1e-25 120.2 174 42.0
Prupe.2G193500 Prunus persica HOM05D003160 ORTHO05D010088 4.8e-22 109.0 197 42.1
Nitab4.5_0000258g0330 Nicotiana tabacum HOM05D003160 ORTHO05D010088 1.4e-21 107.5 220 35.9
MD01G1085700 Malus domestica HOM05D003160 ORTHO05D010088 1.8e-21 107.1 201 38.3
Sed0001592 Sechium edule HOM05D003160 ORTHO05D010088 2.4e-21 106.7 223 37.2
MBI12_g03929_MAGBIO Magnolia biondii HOM05D002361 ORTHO05D002843 4.1e-21 105.9 219 36.1
CANSAT56G3603 Cannabis sativa HOM05D003160 ORTHO05D010088 1.5e-20 104.0 225 35.6
Lj7P497T13 Lonicera japonica HOM05D010811 ORTHO05D010088 2.9e-19 99.8 189 39.7
Sed0027822 Sechium edule HOM05D003160 ORTHO05D010088 5.0e-19 99.0 223 37.7
SalBow3G1544 Salvia bowleyana HOM05D003160 ORTHO05D010088 8.5e-19 98.2 240 33.3
SalBow3G2702 Salvia bowleyana HOM05D003160 ORTHO05D010088 8.5e-19 98.2 240 33.3
FvH4_7g17180 Fragaria vesca HOM05D003160 ORTHO05D010088 7.2e-18 95.1 188 41.0
FAN06G3527 Fragaria x ananassa HOM05D003160 ORTHO05D010088 2.1e-17 93.6 187 39.0
FAN01G1829 Fragaria x ananassa HOM05D003160 ORTHO05D010088 6.1e-17 92.0 188 40.4
FAN03G1832 Fragaria x ananassa HOM05D003160 ORTHO05D010088 1.8e-16 90.5 187 39.0
Cpa.g.sc96.69 Carica papaya HOM05D010811 ORTHO05D010088 6.7e-16 88.6 213 37.1
Eucgr.E00026 Eucalyptus grandis HOM05D003160 ORTHO05D010088 3.3e-15 86.3 186 36.0
RcHm_v2.0_Chr1g0360571 Rosa chinensis HOM05D003160 ORTHO05D010088 5.7e-15 85.5 185 35.1
ECA236G4264 Erigeron canadensis HOM05D003160 ORTHO05D010088 4.8e-14 82.4 142 40.8
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 3.1e-13 79.7 142 32.4
AagrBONN_evm.TU.Sc2ySwM_362.1478 Anthoceros agrestis HOM05D003160 ORTHO05D005967 4.1e-13 79.3 144 31.9
Migut.B01904 Erythranthe guttata HOM05D003160 ORTHO05D010088 9.0e-13 78.2 241 33.2
SGA_v2.0_scaffold5G03046 Striga asiatica HOM05D003160 ORTHO05D010088 9.0e-13 78.2 206 33.5
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 1.5e-12 77.4 164 27.4
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 3.4e-12 76.3 143 31.5
Mapoly0173s0013 Marchantia polymorpha HOM05D003160 ORTHO05D005967 1.3e-11 74.3 144 30.6
COL.COLO4_17389 Corchorus olitorius HOM05D003160 ORTHO05D005967 1.7e-11 73.9 169 30.8
Gorai.002G037600 Gossypium raimondii HOM05D003160 ORTHO05D005967 1.7e-11 73.9 189 29.6
RcHm_v2.0_Chr6g0272941 Rosa chinensis HOM05D003160 ORTHO05D005967 2.2e-11 73.6 144 29.9
Lj4A710G52 Lonicera japonica HOM05D003160 ORTHO05D005967 3.8e-11 72.8 193 29.0
BcaB03g14186 Brassica carinata HOM05D003160 ORTHO05D005967 6.5e-11 72.0 144 32.6
Gohir.D01G028200 Gossypium hirsutum HOM05D003160 ORTHO05D005967 6.5e-11 72.0 189 29.1
THA.LOC104806778 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 6.5e-11 72.0 143 30.1
HPP92_004308 Vanilla planifolia HOM05D003160 ORTHO05D005967 6.5e-11 72.0 144 27.1
CiPaw.12G043000 Carya illinoinensis HOM05D003160 ORTHO05D005967 8.5e-11 71.6 142 29.6
Aa31LG9G14960 Aethionema arabicum HOM05D003160 ORTHO05D005967 1.1e-10 71.2 144 30.6
Thhalv10028838m.g Eutrema salsugineum HOM05D003160 ORTHO05D005967 1.4e-10 70.9 144 30.6
Pp3c24_12520 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.4e-10 70.9 183 30.6
SalBow7G2604 Salvia bowleyana HOM05D003160 ORTHO05D005967 1.4e-10 70.9 144 29.9
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 1.9e-10 70.5 198 27.8
Gohir.A01G040600 Gossypium hirsutum HOM05D003160 ORTHO05D005967 1.9e-10 70.5 189 28.6
Cpa.g.sc66.121 Carica papaya HOM05D003160 ORTHO05D005967 2.5e-10 70.1 195 26.7
Manes.02G188100 Manihot esculenta HOM05D003160 ORTHO05D005967 2.5e-10 70.1 144 28.5
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 2.5e-10 70.1 183 29.5
BcaB01g02780 Brassica carinata HOM05D003160 ORTHO05D005967 3.2e-10 69.7 144 30.6
A09p29470 Brassica napus HOM05D003160 ORTHO05D005967 3.2e-10 69.7 144 30.6
BraA09t38512Z Brassica rapa HOM05D003160 ORTHO05D005967 3.2e-10 69.7 144 30.6
Eucgr.F04149 Eucalyptus grandis HOM05D003160 ORTHO05D005967 3.2e-10 69.7 162 29.6
HanXRQChr10g0278581 Helianthus annuus HOM05D003160 ORTHO05D005967 3.2e-10 69.7 159 27.7
Thecc.07G148800 Theobroma cacao HOM05D003160 ORTHO05D005967 3.2e-10 69.7 169 28.4
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 3.2e-10 69.7 144 27.8
AUR62028884 Chenopodium quinoa HOM05D003160 ORTHO05D005967 4.2e-10 69.3 144 29.2
CARHR249440 Cardamine hirsuta HOM05D010811 ORTHO05D010088 5.5e-10 68.9 186 33.9
unitig_37.g13119 Utricularia gibba HOM05D003160 ORTHO05D005967 5.5e-10 68.9 144 29.2
Ciclev10002351m.g Citrus clementina HOM05D003160 ORTHO05D005967 7.2e-10 68.6 146 27.4
CsaV3_6G002740 Cucumis sativus L. HOM05D003160 ORTHO05D005967 7.2e-10 68.6 144 28.5
Medtr4g103330 Medicago truncatula HOM05D003160 ORTHO05D005967 7.2e-10 68.6 192 27.1
Hund25486 Selenicereus undatus HOM05D003160 ORTHO05D005967 7.2e-10 68.6 209 27.8
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 1.2e-09 67.8 188 27.1
Duzib213G0606 Durio zibethinus HOM05D003160 ORTHO05D005967 1.2e-09 67.8 167 26.3
BcaC01g04706 Brassica carinata HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
BcaC04g20948 Brassica carinata HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
A03p28680 Brassica napus HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
C03p34700 Brassica napus HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
C09p37610 Brassica napus HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
BolC3t15780H Brassica oleracea HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
BolC9t56592H Brassica oleracea HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
BraA03t12067Z Brassica rapa HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
Dinv44718 Davidia involucrata HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 27.1
Pp3c23_6060 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.6e-09 67.4 182 28.6
Sp6g07950 Schrenkiella parvula HOM05D003160 ORTHO05D005967 1.6e-09 67.4 144 29.9
Sed0000690 Sechium edule HOM05D003160 ORTHO05D005967 1.6e-09 67.4 185 27.0
Atru.chr13.1881 Acer truncatum HOM05D003160 ORTHO05D005967 2.1e-09 67.0 144 29.2
Aa31LG5G1040 Aethionema arabicum HOM05D010811 ORTHO05D010088 2.1e-09 67.0 201 35.8
Dinv13072 Davidia involucrata HOM05D003160 ORTHO05D005967 2.1e-09 67.0 144 26.4
Lalb_Chr07g0183411 Lupinus albus HOM05D003160 ORTHO05D005967 2.1e-09 67.0 193 27.5
QL10p002938 Quercus lobata HOM05D003160 ORTHO05D005967 2.1e-09 67.0 139 28.8
MSTRG.24477 Avicennia marina HOM05D003160 ORTHO05D005967 2.7e-09 66.6 144 28.5
AUR62005671 Chenopodium quinoa HOM05D003160 ORTHO05D005967 2.7e-09 66.6 181 28.2
Lsat_1_v5_gn_6_101941 Lactuca sativa HOM05D003160 ORTHO05D005967 2.7e-09 66.6 142 28.9
A07p14220 Brassica napus HOM05D003160 ORTHO05D005967 3.6e-09 66.2 192 28.1
BraA07t29180Z Brassica rapa HOM05D003160 ORTHO05D005967 3.6e-09 66.2 192 28.1
CARHR260570 Cardamine hirsuta HOM05D003160 ORTHO05D005967 3.6e-09 66.2 188 28.7
CiPaw.11G007300 Carya illinoinensis HOM05D003160 ORTHO05D005967 3.6e-09 66.2 142 28.2
Sabra13G0099100 Salix brachista HOM05D003160 ORTHO05D005967 6.1e-09 65.5 139 30.9
Sp6g01230 Schrenkiella parvula HOM05D010811 ORTHO05D010088 6.1e-09 65.5 183 32.2
C07p20940 Brassica napus HOM05D003160 ORTHO05D005967 7.9e-09 65.1 176 27.8
Ca_26100_v3 Cicer arietinum L. HOM05D003160 ORTHO05D005967 7.9e-09 65.1 210 27.6
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 7.9e-09 65.1 185 24.9
BcaC06g34989 Brassica carinata HOM05D003160 ORTHO05D005967 1.0e-08 64.7 155 28.4
Migut.C00219 Erythranthe guttata HOM05D003160 ORTHO05D005967 1.0e-08 64.7 199 26.6
FAN27G2017 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.0e-08 64.7 203 27.1
CAN.G47.5 Capsicum annuum HOM05D003160 ORTHO05D005967 1.4e-08 64.3 144 27.8
FvH4_2g12490 Fragaria vesca HOM05D003160 ORTHO05D005967 1.4e-08 64.3 204 27.0
FAN24G0582 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.4e-08 64.3 204 27.0
Sc04g0010380 Simmondsia chinensis HOM05D003160 ORTHO05D005967 1.4e-08 64.3 165 27.3
CSS0043683 Camellia sinensis var. sinensis HOM05D003160 ORTHO05D005967 1.8e-08 63.9 205 27.3
CANSAT25G2288 Cannabis sativa HOM05D003160 ORTHO05D005967 1.8e-08 63.9 195 27.2
MELO3C025005.2 Cucumis melo HOM05D003160 ORTHO05D005967 1.8e-08 63.9 188 27.1
FAN15G0653 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.8e-08 63.9 204 27.0
Nn2g14435 Nelumbo nucifera HOM05D003160 ORTHO05D005967 1.8e-08 63.9 139 25.9
Peaxi162Scf00160g01617 Petunia axillaris HOM05D003160 ORTHO05D005967 1.8e-08 63.9 139 27.3
HPP92_022428 Vanilla planifolia HOM05D003160 ORTHO05D010088 1.8e-08 63.9 244 27.9
AT4G09650 Arabidopsis thaliana HOM05D003160 ORTHO05D005967 2.3e-08 63.5 185 26.5
BolC7t42626H Brassica oleracea HOM05D003160 ORTHO05D005967 2.3e-08 63.5 176 27.8
Rhsim07G0198600 Rhododendron simsii HOM05D003160 ORTHO05D005967 2.3e-08 63.5 139 26.6
THA.LOC104801361 Tarenaya hassleriana HOM05D010811 ORTHO05D010088 2.3e-08 63.5 192 36.5
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 2.3e-08 63.5 144 25.7
Aqoxy6G00501 Aquilegia oxysepala HOM05D003160 ORTHO05D005967 3.0e-08 63.2 201 24.9
AL6G52500 Arabidopsis lyrata HOM05D010811 ORTHO05D010088 3.0e-08 63.2 206 33.5
EL10Ac6g13555 Beta vulgaris HOM05D003160 ORTHO05D005967 3.9e-08 62.8 139 23.7
MBI05_g36578_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D005967 3.9e-08 62.8 142 24.6
Nitab4.5_0000425g0240 Nicotiana tabacum HOM05D003160 ORTHO05D005967 3.9e-08 62.8 142 26.1
Potri.013G117000 Populus trichocarpa HOM05D003160 ORTHO05D005967 3.9e-08 62.8 212 28.8
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 5.1e-08 62.4 199 26.6
TPR.G19210 Trifolium pratense HOM05D003160 ORTHO05D005967 5.1e-08 62.4 212 26.4
AL6G43270 Arabidopsis lyrata HOM05D003160 ORTHO05D005967 8.8e-08 61.6 185 26.5
Carub.0006s2810 Capsella rubella HOM05D003160 ORTHO05D005967 1.1e-07 61.2 188 25.0
Mapoly0006s0050 Marchantia polymorpha HOM05D003160 ORTHO05D005967 1.1e-07 61.2 144 29.9
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 1.1e-07 61.2 150 27.3
Sopen12g029510 Solanum pennellii HOM05D003160 ORTHO05D005967 1.1e-07 61.2 147 25.9
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 1.5e-07 60.8 188 24.5
AT4G00895 Arabidopsis thaliana HOM05D010811 ORTHO05D010088 2.0e-07 60.5 197 29.9
Cc10_g06080 Coffea canephora HOM05D003160 ORTHO05D005967 2.0e-07 60.5 201 25.9
Solyc12g056830.1 Solanum lycopersicum HOM05D003160 ORTHO05D005967 2.0e-07 60.5 147 25.2
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 2.6e-07 60.1 196 25.5
BcaB05g23969 Brassica carinata HOM05D010811 ORTHO05D010088 3.3e-07 59.7 184 33.2
HanXRQChr02g0043721 Helianthus annuus HOM05D003160 ORTHO05D005967 3.3e-07 59.7 186 24.7
Potri.019G087300 Populus trichocarpa HOM05D003160 ORTHO05D005967 4.4e-07 59.3 191 27.2
Sc23g0001970 Simmondsia chinensis HOM05D003160 ORTHO05D010088 4.4e-07 59.3 191 33.0
Lsat_1_v5_gn_1_4801 Lactuca sativa HOM05D003160 ORTHO05D005967 5.7e-07 58.9 193 25.4
Ah.02g131050 Amaranthus hybridus HOM05D003160 ORTHO05D005967 7.4e-07 58.5 185 25.4
Cre11.g467569 Chlamydomonas reinhardtii HOM05D003160 ORTHO05D005967 7.4e-07 58.5 140 25.0
PGSC0003DMG400016959 Solanum tuberosum HOM05D003160 ORTHO05D005967 9.7e-07 58.2 147 24.5
Nitab4.5_0006745g0030 Nicotiana tabacum HOM05D003160 ORTHO05D005967 1.3e-06 57.8 197 26.4
Carub.0006s3593 Capsella rubella HOM05D010811 ORTHO05D010088 3.7e-06 56.2 194 30.4
BcaC03g16081 Brassica carinata HOM05D010811 ORTHO05D010088 8.2e-06 55.1 189 30.7
BolC2t09859H Brassica oleracea HOM05D010811 ORTHO05D010088 8.2e-06 55.1 189 30.7


User provided reference genes

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