Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4257 Trifolium pratense HOM05D004091 ORTHO05D004581 8.0e-100 367.1 183 100.0
TPR.G21029 Trifolium pratense HOM05D004091 ORTHO05D004581 1.7e-65 253.1 181 73.5
Psat5g253480 Pisum sativum HOM05D004091 ORTHO05D004581 2.4e-51 206.1 179 65.4
Ca_01707_v3 Cicer arietinum L. HOM05D004091 ORTHO05D004581 1.9e-48 196.4 185 61.6
Medtr2g084280 Medicago truncatula HOM05D004091 ORTHO05D004581 5.4e-48 194.9 180 63.3
Glyma.12G178500 Glycine max HOM05D004091 ORTHO05D004581 5.4e-40 168.3 167 61.7
TPR.G36836 Trifolium pratense HOM05D004091 ORTHO05D004581 3.1e-35 152.5 171 57.3
TPR.G21034 Trifolium pratense HOM05D004091 ORTHO05D004581 9.0e-35 151.0 70 98.6
Lj3g0003103 Lotus japonicus HOM05D004091 ORTHO05D004581 5.8e-34 148.3 189 51.3
VMungo1080G0687 Vigna mungo HOM05D004091 ORTHO05D004581 7.6e-34 147.9 186 50.0
Lalb_Chr24g0394931 Lupinus albus HOM05D004091 ORTHO05D004581 3.8e-33 145.6 171 55.0
Glyma.13G322100 Glycine max HOM05D004091 ORTHO05D004581 6.0e-31 138.3 185 50.3
Lj3g0002714 Lotus japonicus HOM05D004091 ORTHO05D004581 1.3e-30 137.1 172 52.3
Phvul.005G130500 Phaseolus vulgaris HOM05D004091 ORTHO05D004581 2.3e-30 136.3 188 47.9
Medtr4g057270 Medicago truncatula HOM05D004091 ORTHO05D004581 5.6e-29 131.7 176 52.8
arahy.Tifrunner.gnm1.ann1.MIP29L Arachis hypogaea HOM05D004091 ORTHO05D004581 4.8e-28 128.6 194 44.8
Glyma.12G081200 Glycine max HOM05D004091 ORTHO05D004581 3.8e-25 119.0 170 47.1
Psat7g191640 Pisum sativum HOM05D004091 ORTHO05D004581 3.8e-25 119.0 176 48.3
Phvul.011G086200 Phaseolus vulgaris HOM05D004091 ORTHO05D004581 6.4e-25 118.2 165 45.5
Glyma.11G192800 Glycine max HOM05D004091 ORTHO05D004581 1.1e-24 117.5 169 47.9
Lalb_Chr22g0350411 Lupinus albus HOM05D004091 ORTHO05D004581 1.9e-24 116.7 179 47.5
arahy.Tifrunner.gnm1.ann1.H3UHY6 Arachis hypogaea HOM05D004091 ORTHO05D004581 4.6e-23 112.1 197 40.6
VMungo1127G1339 Vigna mungo HOM05D004091 ORTHO05D004581 7.9e-23 111.3 165 44.8
Lalb_Chr14g0374401 Lupinus albus HOM05D004091 ORTHO05D004581 2.5e-21 106.3 194 40.7
Haze_16835 Corylus avellana HOM05D004091 ORTHO05D004581 9.6e-21 104.4 165 41.8
Thecc.09G298700 Theobroma cacao HOM05D004091 ORTHO05D004581 1.3e-20 104.0 160 42.5
Ciclev10029810m.g Citrus clementina HOM05D004091 ORTHO05D004581 1.6e-20 103.6 174 43.1
Cfa001699 Carpinus fangiana HOM05D004091 ORTHO05D004581 3.7e-20 102.4 166 40.4
Ciclev10030052m.g Citrus clementina HOM05D004091 ORTHO05D004581 1.0e-17 94.4 158 40.5
QL01p015070 Quercus lobata HOM05D004091 ORTHO05D004581 1.0e-17 94.4 171 40.4
RcHm_v2.0_Chr5g0056871 Rosa chinensis HOM05D004091 ORTHO05D004581 1.0e-17 94.4 162 43.2
Aa31LG5G7980 Aethionema arabicum HOM05D004091 ORTHO05D004581 1.3e-17 94.0 173 42.2
BcaC02g10950 Brassica carinata HOM05D004091 ORTHO05D004581 1.3e-17 94.0 166 41.6
C04p23350 Brassica napus HOM05D004091 ORTHO05D004581 1.3e-17 94.0 166 41.6
Ciclev10029784m.g Citrus clementina HOM05D004091 ORTHO05D004581 1.7e-17 93.6 167 40.1
THA.LOC104826386 Tarenaya hassleriana HOM05D004091 ORTHO05D004581 1.7e-17 93.6 166 37.3
THA.LOC104800575 Tarenaya hassleriana HOM05D004091 ORTHO05D004581 2.2e-17 93.2 161 39.8
CARHR121010 Cardamine hirsuta HOM05D004091 ORTHO05D004581 3.8e-17 92.4 171 39.8
COL.COLO4_19192 Corchorus olitorius HOM05D004091 ORTHO05D004581 3.8e-17 92.4 154 41.6
Manes.11G152300 Manihot esculenta HOM05D004091 ORTHO05D004581 3.8e-17 92.4 169 42.6
TAR369G1011 Trochodendron aralioides HOM05D004091 ORTHO05D004581 3.8e-17 92.4 160 44.4
Duzib170G1119 Durio zibethinus HOM05D004091 ORTHO05D004581 4.9e-17 92.0 173 41.6
ClCG02G021600 Citrullus lanatus HOM05D004091 ORTHO05D004581 6.5e-17 91.7 158 41.8
CiPaw.11G059100 Carya illinoinensis HOM05D004091 ORTHO05D004581 1.1e-16 90.9 168 38.1
MD03G1127600 Malus domestica HOM05D004091 ORTHO05D004581 1.1e-16 90.9 156 43.6
Gohir.D05G088200 Gossypium hirsutum HOM05D004091 ORTHO05D004581 5.5e-16 88.6 172 38.4
Sed0002152 Sechium edule HOM05D004091 ORTHO05D004581 5.5e-16 88.6 160 40.0
Thhalv10016957m.g Eutrema salsugineum HOM05D004091 ORTHO05D004581 7.1e-16 88.2 172 40.1
Gohir.A05G087000 Gossypium hirsutum HOM05D004091 ORTHO05D004581 1.2e-15 87.4 172 38.4
Cpa.g.c28125.2 Carica papaya HOM05D004091 ORTHO05D004581 1.6e-15 87.0 153 37.9
FvH4_3g30660 Fragaria vesca HOM05D004091 ORTHO05D004581 2.7e-15 86.3 156 40.4
Gorai.009G090400 Gossypium raimondii HOM05D004091 ORTHO05D004581 3.5e-15 85.9 172 37.8
GSVIVG01031466001 Vitis vinifera HOM05D004091 ORTHO05D004581 3.5e-15 85.9 171 40.4
Carub.0004s0898 Capsella rubella HOM05D004091 ORTHO05D004581 1.0e-14 84.3 180 37.8
AL4G21990 Arabidopsis lyrata HOM05D004091 ORTHO05D004581 1.3e-14 84.0 173 37.6
FAN16G2177 Fragaria x ananassa HOM05D004091 ORTHO05D004581 1.3e-14 84.0 153 40.5
RcHm_v2.0_Chr5g0056881 Rosa chinensis HOM05D004091 ORTHO05D004581 1.3e-14 84.0 158 40.5
MD03G1129100 Malus domestica HOM05D004091 ORTHO05D004581 3.0e-14 82.8 155 39.4
A03p26390 Brassica napus HOM05D004091 ORTHO05D004581 3.9e-14 82.4 171 38.6
BraA03t11854Z Brassica rapa HOM05D004091 ORTHO05D004581 3.9e-14 82.4 171 38.6
Sp4g10970 Schrenkiella parvula HOM05D004091 ORTHO05D004581 3.9e-14 82.4 175 39.4
TWI79G0102 Tripterygium wilfordii HOM05D004091 ORTHO05D004581 3.9e-14 82.4 167 39.5
BcaC01g04962 Brassica carinata HOM05D004091 ORTHO05D004581 6.7e-14 81.6 171 38.0
C03p31680 Brassica napus HOM05D004091 ORTHO05D004581 6.7e-14 81.6 171 38.0
BolC3t15510H Brassica oleracea HOM05D004091 ORTHO05D004581 6.7e-14 81.6 171 38.0
AT2G28160 Arabidopsis thaliana HOM05D004091 ORTHO05D004581 8.7e-14 81.3 178 37.6
BraA04t17704Z Brassica rapa HOM05D004091 ORTHO05D004581 1.1e-13 80.9 172 36.6
Gohir.A09G088800 Gossypium hirsutum HOM05D004091 ORTHO05D004581 1.5e-13 80.5 166 37.3
TWI79G0199 Tripterygium wilfordii HOM05D004091 ORTHO05D004581 1.5e-13 80.5 167 39.5
A04p21360 Brassica napus HOM05D004091 ORTHO05D004581 1.9e-13 80.1 172 36.6
BcaC02g08204 Brassica carinata HOM05D004091 ORTHO05D004581 4.3e-13 79.0 177 36.7
C04p57310 Brassica napus HOM05D004091 ORTHO05D004581 4.3e-13 79.0 177 36.7
Gohir.D09G088575 Gossypium hirsutum HOM05D004091 ORTHO05D004581 4.3e-13 79.0 169 34.3
Gorai.006G105000 Gossypium raimondii HOM05D004091 ORTHO05D004581 4.3e-13 79.0 169 34.3
FvH4_3g30650 Fragaria vesca HOM05D004091 ORTHO05D004581 1.6e-12 77.0 155 37.4
BcaB06g28191 Brassica carinata HOM05D004091 ORTHO05D004581 2.2e-12 76.6 173 36.4
BolC4t27254H Brassica oleracea HOM05D004091 ORTHO05D004581 2.8e-12 76.3 177 36.2
BcaB01g03093 Brassica carinata HOM05D004091 ORTHO05D004581 8.2e-12 74.7 177 39.5
FAN11G2030 Fragaria x ananassa HOM05D004091 ORTHO05D004581 8.2e-12 74.7 155 36.8
BolC4t23837H Brassica oleracea HOM05D004091 ORTHO05D004581 1.4e-11 73.9 166 37.3
Aqoxy2G01663 Aquilegia oxysepala HOM05D004091 ORTHO05D004581 1.8e-11 73.6 175 35.4
A07p18700 Brassica napus HOM05D004091 ORTHO05D004581 1.8e-11 73.6 166 37.3
BraA07t29581Z Brassica rapa HOM05D004091 ORTHO05D004581 1.8e-11 73.6 166 37.3
FAN25G1486 Fragaria x ananassa HOM05D004091 ORTHO05D004581 1.8e-11 73.6 155 36.8
CAN.G246.1 Capsicum annuum HOM05D004091 ORTHO05D004581 2.4e-11 73.2 160 38.8
CANSAT54G0269 Cannabis sativa HOM05D004091 ORTHO05D004581 4.1e-11 72.4 189 36.0
Lalb_Chr14g0374421 Lupinus albus HOM05D004091 ORTHO05D004581 4.1e-11 72.4 84 48.8
TAR623G0825 Trochodendron aralioides HOM05D004091 ORTHO05D004581 4.1e-11 72.4 158 37.3
Atru.chr3.3518 Acer truncatum HOM05D004091 ORTHO05D004581 5.3e-11 72.0 172 38.4
Dinv16219 Davidia involucrata HOM05D004091 ORTHO05D004581 6.9e-11 71.6 168 34.5
MD03G1127500 Malus domestica HOM05D004091 ORTHO05D004581 6.9e-11 71.6 154 38.3
BcaB02g10153 Brassica carinata HOM05D004091 ORTHO05D004581 1.2e-10 70.9 168 35.1
TPR.G22181 Trifolium pratense HOM05D004091 ORTHO05D004581 2.0e-10 70.1 52 73.1
Actinidia24146 Actinidia chinensis HOM05D004091 ORTHO05D004581 5.9e-10 68.6 171 33.9
Sabra09G0002900 Salix brachista HOM05D004091 ORTHO05D004581 1.3e-09 67.4 173 37.6
TWI75G1803 Tripterygium wilfordii HOM05D004091 ORTHO05D004581 1.3e-09 67.4 155 36.1
DCAR_006116 Daucus carota HOM05D004091 ORTHO05D004581 1.7e-09 67.0 154 37.0
MSTRG.18701 Avicennia marina HOM05D004091 ORTHO05D004581 2.2e-09 66.6 174 35.6
CsaV3_6G014370 Cucumis sativus L. HOM05D004091 ORTHO05D004581 2.9e-09 66.2 159 35.2
PSO339G2885 Papaver somniferum HOM05D004091 ORTHO05D004581 8.5e-09 64.7 189 30.7
MELO3C026952.2 Cucumis melo HOM05D004091 ORTHO05D004581 1.1e-08 64.3 159 34.6
Potri.009G005600 Populus trichocarpa HOM05D004091 ORTHO05D004581 1.4e-08 63.9 167 36.5
Nitab4.5_0000870g0060 Nicotiana tabacum HOM05D004091 ORTHO05D004581 3.2e-08 62.8 161 32.9
Nitab4.5_0001634g0050 Nicotiana tabacum HOM05D004091 ORTHO05D004581 3.2e-08 62.8 162 32.7
Nn6g35225 Nelumbo nucifera HOM05D004091 ORTHO05D004581 5.5e-08 62.0 155 34.8
Prupe.6G112600 Prunus persica HOM05D004091 ORTHO05D004581 5.5e-08 62.0 123 37.4
Nn6g35240 Nelumbo nucifera HOM05D004091 ORTHO05D004581 7.2e-08 61.6 154 36.4
Nitab4.5_0001897g0030 Nicotiana tabacum HOM05D004091 ORTHO05D004581 7.2e-08 61.6 160 32.5
PGSC0003DMG400019017 Solanum tuberosum HOM05D004091 ORTHO05D004581 9.4e-08 61.2 153 34.0
Solyc06g051550.4 Solanum lycopersicum HOM05D004091 ORTHO05D004581 1.2e-07 60.8 154 33.1
HanXRQChr01g0019641 Helianthus annuus HOM05D004091 ORTHO05D004581 2.1e-07 60.1 169 31.4
Nn2g13852 Nelumbo nucifera HOM05D004091 ORTHO05D004581 2.1e-07 60.1 158 36.7
CAN.G2082.3 Capsicum annuum HOM05D004091 ORTHO05D004581 2.7e-07 59.7 156 32.7
Cc01_g10310 Coffea canephora HOM05D004091 ORTHO05D004581 3.6e-07 59.3 157 33.1
MBI13_g13834_MAGBIO Magnolia biondii HOM05D004091 ORTHO05D004581 3.6e-07 59.3 158 35.4
Peaxi162Scf00490g00018 Petunia axillaris HOM05D004091 ORTHO05D004581 4.6e-07 58.9 157 33.8
SalBow6G6360 Salvia bowleyana HOM05D004091 ORTHO05D004581 4.6e-07 58.9 168 31.0
DCAR_006122 Daucus carota HOM05D004091 ORTHO05D004581 6.1e-07 58.5 154 34.4
Sopen06g017530 Solanum pennellii HOM05D004091 ORTHO05D004581 7.9e-07 58.2 153 31.4
Nitab4.5_0001634g0060 Nicotiana tabacum HOM05D004091 ORTHO05D004581 3.0e-06 56.2 160 32.5
Ah.01g003340 Amaranthus hybridus HOM05D004091 ORTHO05D004581 6.7e-06 55.1 178 29.2
HanXRQChr11g0346601 Helianthus annuus HOM05D004091 ORTHO05D004581 8.8e-06 54.7 180 30.0


User provided reference genes

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