Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 2.6e-53 211.8 110 100.0
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 1.1e-48 196.4 110 92.7
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 4.7e-47 191.0 110 90.9
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 8.3e-44 180.3 121 81.0
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 8.3e-44 180.3 121 81.0
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 4.0e-38 161.4 110 78.2
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 3.7e-36 154.8 110 73.6
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 1.1e-35 153.3 110 72.7
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 1.9e-35 152.5 110 74.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 5.4e-35 151.0 110 71.8
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 2.7e-34 148.7 110 72.7
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 7.3e-24 114.0 110 56.4
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 1.6e-23 112.8 110 56.4
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 2.8e-23 112.1 110 55.5
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 3.6e-23 111.7 110 51.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 1.8e-22 109.4 110 50.9
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 3.1e-22 108.6 110 57.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 2.0e-21 105.9 110 52.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 2.0e-21 105.9 110 55.5
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.6e-21 105.5 110 51.8
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 4.4e-21 104.8 110 50.9
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 4.4e-21 104.8 109 54.1
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 9.9e-21 103.6 106 51.9
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 1.7e-20 102.8 110 51.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.7e-20 102.8 110 51.8
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.7e-20 102.8 110 51.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.9e-20 102.1 114 50.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 3.8e-20 101.7 110 50.0
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.8e-20 101.7 110 50.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 3.8e-20 101.7 110 51.8
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 8.4e-20 100.5 110 48.2
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 1.1e-19 100.1 108 50.0
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 1.4e-19 99.8 110 50.0
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 7.1e-19 97.4 108 48.1
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 7.1e-19 97.4 110 50.0
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 1.2e-18 96.7 110 50.9
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 1.2e-18 96.7 106 49.1
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 1.2e-18 96.7 109 50.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.1e-18 95.9 108 53.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 2.1e-18 95.9 110 46.4
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 2.7e-18 95.5 110 50.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 2.7e-18 95.5 110 47.3
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 2.7e-18 95.5 110 46.4
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 3.5e-18 95.1 110 46.4
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 4.6e-18 94.7 106 50.9
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 4.6e-18 94.7 114 49.1
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 7.8e-18 94.0 109 49.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 7.8e-18 94.0 110 49.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.0e-17 93.6 109 47.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 1.0e-17 93.6 109 45.9
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 1.3e-17 93.2 110 48.2
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.7e-17 92.8 113 46.9
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 2.3e-17 92.4 109 45.9
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 2.3e-17 92.4 109 45.9
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 2.3e-17 92.4 114 49.1
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 3.9e-17 91.7 109 46.8
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 6.6e-17 90.9 109 45.0
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 6.6e-17 90.9 109 45.0
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 8.7e-17 90.5 110 45.5
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 8.7e-17 90.5 110 45.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 1.9e-16 89.4 110 44.5
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.9e-16 89.4 110 49.1
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 1.9e-16 89.4 110 49.1
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.5e-16 89.0 110 44.5
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 3.3e-16 88.6 109 44.0
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 5.6e-16 87.8 109 45.9
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 7.3e-16 87.4 110 50.0
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 9.6e-16 87.0 110 46.4
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 9.6e-16 87.0 110 44.5
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.2e-15 86.7 110 44.5
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 1.6e-15 86.3 110 43.6
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 3.6e-15 85.1 110 43.6
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 6.2e-15 84.3 107 43.0
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 1.4e-14 83.2 110 43.6
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 2.4e-14 82.4 103 45.6
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 4.0e-14 81.6 110 44.5
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 6.9e-14 80.9 102 46.1
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 9.0e-14 80.5 119 40.3
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 4.4e-13 78.2 110 42.7
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 9.9e-13 77.0 67 59.7
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 2.9e-12 75.5 106 42.5
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 8.4e-12 73.9 108 42.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.2e-10 70.1 176 33.5
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.0e-09 65.5 50 66.0
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 9.6e-08 60.5 81 40.7
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.8e-07 58.9 55 54.5
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.2e-07 57.8 82 41.5
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.1e-06 55.5 73 45.2


User provided reference genes

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