Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40725 Trifolium pratense HOM05D003275 ORTHO05D003732 1.0e-31 139.4 68 100.0
Psat0ss1279g0400 Pisum sativum HOM05D003275 ORTHO05D003732 2.6e-24 114.8 67 83.6
Glyma.06G052300 Glycine max HOM05D003275 ORTHO05D003732 1.0e-23 112.8 67 80.6
Glyma.04G051500 Glycine max HOM05D003275 ORTHO05D003732 3.8e-23 110.9 67 80.6
arahy.Tifrunner.gnm1.ann1.32MGU6 Arachis hypogaea HOM05D003275 ORTHO05D003732 3.6e-21 104.4 65 75.4
Phvul.009G077800 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 3.6e-21 104.4 67 71.6
Lalb_Chr08g0245071 Lupinus albus HOM05D003275 ORTHO05D003732 4.7e-21 104.0 66 72.7
Medtr3g104420 Medicago truncatula HOM05D003275 ORTHO05D003732 1.4e-20 102.4 65 76.9
Lj1g0012846 Lotus japonicus HOM05D003275 ORTHO05D003732 6.8e-20 100.1 65 73.8
arahy.Tifrunner.gnm1.ann1.WQ6HRD Arachis hypogaea HOM05D003275 ORTHO05D003732 2.0e-19 98.6 66 71.2
Psat0s4497g0080 Pisum sativum HOM05D003275 ORTHO05D003732 5.7e-19 97.1 65 69.2
QL02p001118 Quercus lobata HOM05D003275 ORTHO05D003732 1.7e-18 95.5 65 67.7
Medtr1g016080 Medicago truncatula HOM05D003275 ORTHO05D003732 3.7e-18 94.4 65 66.2
TPR.G13175 Trifolium pratense HOM05D003275 ORTHO05D003732 3.7e-18 94.4 65 67.7
Haze_18185 Corylus avellana HOM05D003275 ORTHO05D003732 4.8e-18 94.0 64 64.1
Lj5g0008225 Lotus japonicus HOM05D003275 ORTHO05D003732 4.8e-18 94.0 62 72.6
CANSAT25G2318 Cannabis sativa HOM05D003275 ORTHO05D003732 1.8e-17 92.0 67 59.7
VMungo1309G2424 Vigna mungo HOM05D003275 ORTHO05D003732 3.1e-17 91.3 58 72.4
CiPaw.15G038500 Carya illinoinensis HOM05D003275 ORTHO05D003732 7.0e-17 90.1 65 61.5
Nn8g38852 Nelumbo nucifera HOM05D003275 ORTHO05D003732 7.0e-17 90.1 64 62.5
Ciclev10009178m.g Citrus clementina HOM05D003275 ORTHO05D003732 1.2e-16 89.4 63 63.5
Haze_18178 Corylus avellana HOM05D003275 ORTHO05D003732 2.0e-16 88.6 57 66.7
TWI34G1634 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 2.0e-16 88.6 64 65.6
Lalb_Chr14g0366311 Lupinus albus HOM05D003275 ORTHO05D003732 7.7e-16 86.7 65 61.5
TAR383G0517 Trochodendron aralioides HOM05D003275 ORTHO05D003732 7.7e-16 86.7 63 61.9
Sabra06G0177100 Salix brachista HOM05D003275 ORTHO05D003732 1.7e-15 85.5 66 62.1
PSO832G1640 Papaver somniferum HOM05D003275 ORTHO05D003732 3.8e-15 84.3 64 60.9
Atru.chr7.1081 Acer truncatum HOM05D003275 ORTHO05D003732 8.5e-15 83.2 59 57.6
Potri.006G228700 Populus trichocarpa HOM05D003275 ORTHO05D003732 1.1e-14 82.8 65 60.0
AT5G11870 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 1.9e-14 82.0 66 57.6
Nn6g35489 Nelumbo nucifera HOM05D003275 ORTHO05D003732 3.2e-14 81.3 57 64.9
MD08G1062700 Malus domestica HOM05D003275 ORTHO05D003732 9.4e-14 79.7 63 54.0
CARHR201290 Cardamine hirsuta HOM05D003275 ORTHO05D003732 1.2e-13 79.3 66 54.5
Manes.03G048000 Manihot esculenta HOM05D003275 ORTHO05D003732 2.1e-13 78.6 59 59.3
Thhalv10014390m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 3.6e-13 77.8 66 54.5
Carub.0006s1040 Capsella rubella HOM05D003275 ORTHO05D003732 4.7e-13 77.4 66 54.5
Eucgr.C00652 Eucalyptus grandis HOM05D003275 ORTHO05D003732 4.7e-13 77.4 57 61.4
Sp6g31730 Schrenkiella parvula HOM05D003275 ORTHO05D003732 6.1e-13 77.0 61 59.0
Thecc.09G054400 Theobroma cacao HOM05D003275 ORTHO05D003732 6.1e-13 77.0 64 53.1
PGR031G0256 Punica granatum HOM05D003275 ORTHO05D003732 8.0e-13 76.6 61 55.7
Gohir.A06G087400 Gossypium hirsutum HOM05D003275 ORTHO05D003732 1.4e-12 75.9 63 50.8
THA.LOC104799163 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 1.4e-12 75.9 66 53.0
ATR0026G038 Amborella trichopoda HOM05D003275 ORTHO05D003732 3.0e-12 74.7 58 55.2
Duzib168G2080 Durio zibethinus HOM05D003275 ORTHO05D003732 6.8e-12 73.6 64 48.4
HPP92_000672 Vanilla planifolia HOM05D003275 ORTHO05D003732 8.8e-12 73.2 58 50.0
Gohir.D06G086800 Gossypium hirsutum HOM05D003275 ORTHO05D003732 1.2e-11 72.8 63 49.2
MD15G1059000 Malus domestica HOM05D003275 ORTHO05D003732 3.4e-11 71.2 63 50.8
AL6G22630 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 4.4e-11 70.9 66 51.5
FvH4_2g31810 Fragaria vesca HOM05D003275 ORTHO05D003732 4.4e-11 70.9 63 50.8
RcHm_v2.0_Chr6g0311011 Rosa chinensis HOM05D003275 ORTHO05D003732 4.4e-11 70.9 62 51.6
MBI01_g01261_MAGBIO Magnolia biondii HOM05D003275 ORTHO05D003732 5.7e-11 70.5 57 49.1
GSVIVG01035399001 Vitis vinifera HOM05D003275 ORTHO05D003732 5.7e-11 70.5 55 54.5
BolC9t59327H Brassica oleracea HOM05D003275 ORTHO05D003732 7.5e-11 70.1 64 51.6
Aa31LG3G15330 Aethionema arabicum HOM05D003275 ORTHO05D003732 9.8e-11 69.7 67 50.7
A10p25910 Brassica napus HOM05D003275 ORTHO05D003732 9.8e-11 69.7 64 51.6
Gorai.010G100200 Gossypium raimondii HOM05D003275 ORTHO05D003732 9.8e-11 69.7 59 49.2
FAN15G3499 Fragaria x ananassa HOM05D003275 ORTHO05D003732 4.8e-10 67.4 54 57.4
SEGI_25464 Sequoiadendron giganteum HOM05D003275 ORTHO05D003732 8.3e-10 66.6 57 50.9
MSTRG.16515 Avicennia marina HOM05D003275 ORTHO05D003732 1.4e-09 65.9 58 48.3
BraA10t44653Z Brassica rapa HOM05D003275 ORTHO05D003732 1.8e-09 65.5 65 50.8
Manes.07G017000 Manihot esculenta HOM05D003275 ORTHO05D003732 2.4e-09 65.1 58 46.6
SGA_v2.0_scaffold110G31330 Striga asiatica HOM05D003275 ORTHO05D003732 3.1e-09 64.7 58 48.3
THA.LOC104812760 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 3.1e-09 64.7 62 45.2
Potri.001G211600 Populus trichocarpa HOM05D003275 ORTHO05D003732 5.4e-09 63.9 58 43.1
Aa31LG4G9320 Aethionema arabicum HOM05D003275 ORTHO05D003732 9.1e-09 63.2 62 45.2
Peaxi162Scf00011g00534 Petunia axillaris HOM05D003275 ORTHO05D003732 9.1e-09 63.2 58 44.8
AL2G30800 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 1.2e-08 62.8 58 46.6
AT1G71190 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 1.2e-08 62.8 58 46.6
CAN.G798.6 Capsicum annuum HOM05D003275 ORTHO05D003732 1.2e-08 62.8 58 44.8
Nitab4.5_0007514g0030 Nicotiana tabacum HOM05D003275 ORTHO05D003732 1.2e-08 62.8 58 46.6
THA.LOC104798496 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 1.2e-08 62.8 62 43.5
vmacro19886 Vaccinium macrocarpon HOM05D003275 ORTHO05D003732 1.2e-08 62.8 57 43.9
BcaC04g19190 Brassica carinata HOM05D003275 ORTHO05D003732 1.6e-08 62.4 55 50.9
C09p64990 Brassica napus HOM05D003275 ORTHO05D003732 1.6e-08 62.4 55 50.9
CSS0025935 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.6e-08 62.4 57 43.9
CSS0029284 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 1.6e-08 62.4 57 43.9
Ciclev10002064m.g Citrus clementina HOM05D003275 ORTHO05D003732 1.6e-08 62.4 62 45.2
Rhsim05G0119500 Rhododendron simsii HOM05D003275 ORTHO05D003732 1.6e-08 62.4 57 45.6
Sabra01G0163400 Salix brachista HOM05D003275 ORTHO05D003732 1.6e-08 62.4 58 43.1
Thecc.02G087700 Theobroma cacao HOM05D003275 ORTHO05D003732 1.6e-08 62.4 62 43.5
Actinidia26152 Actinidia chinensis HOM05D003275 ORTHO05D003732 2.0e-08 62.0 57 42.1
A10p25900 Brassica napus HOM05D003275 ORTHO05D003732 2.0e-08 62.0 55 50.9
Thhalv10018974m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 2.0e-08 62.0 58 44.8
PGR142G1307 Punica granatum HOM05D003275 ORTHO05D003732 2.0e-08 62.0 57 43.9
PGSC0003DMG400023796 Solanum tuberosum HOM05D003275 ORTHO05D003732 2.0e-08 62.0 58 43.1
GSVIVG01022875001 Vitis vinifera HOM05D003275 ORTHO05D003732 2.0e-08 62.0 62 43.5
Atru.chr4.1466 Acer truncatum HOM05D003275 ORTHO05D003732 2.7e-08 61.6 58 44.8
CARHR064460 Cardamine hirsuta HOM05D003275 ORTHO05D003732 2.7e-08 61.6 58 44.8
Haze_01710 Corylus avellana HOM05D003275 ORTHO05D003732 2.7e-08 61.6 59 42.4
Dinv19374 Davidia involucrata HOM05D003275 ORTHO05D003732 2.7e-08 61.6 57 45.6
Nitab4.5_0000816g0100 Nicotiana tabacum HOM05D003275 ORTHO05D003732 2.7e-08 61.6 58 44.8
Sp5g26350 Schrenkiella parvula HOM05D003275 ORTHO05D003732 2.7e-08 61.6 58 43.1
BcaB03g14876 Brassica carinata HOM05D003275 ORTHO05D003732 3.5e-08 61.2 64 40.6
C06p35730 Brassica napus HOM05D000145 ORTHO05D003732 3.5e-08 61.2 58 43.1
BolC6t38696H Brassica oleracea HOM05D000145 ORTHO05D003732 3.5e-08 61.2 58 43.1
CSS0049502 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 3.5e-08 61.2 64 40.6
Oeu008899.2 Olea europaea HOM05D003275 ORTHO05D003732 3.5e-08 61.2 58 44.8
CARHR056290 Cardamine hirsuta HOM05D003275 ORTHO05D003732 4.5e-08 60.8 59 44.1
Cpa.g.sc113.53 Carica papaya HOM05D003275 ORTHO05D003732 4.5e-08 60.8 55 45.5
Gohir.A13G035200 Gossypium hirsutum HOM05D003275 ORTHO05D003732 4.5e-08 60.8 62 43.5
Hma1.2p1_0217F.1_g092140 Hydrangea macrophylla HOM05D003275 ORTHO05D003732 4.5e-08 60.8 57 43.9
TWI14G0966 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 4.5e-08 60.8 62 43.5
TAR381G0360 Trochodendron aralioides HOM05D003275 ORTHO05D003732 4.5e-08 60.8 62 43.5
BcaC08g45789 Brassica carinata HOM05D000145 ORTHO05D003732 5.9e-08 60.5 58 41.4
A07p30830 Brassica napus HOM05D000145 ORTHO05D003732 5.9e-08 60.5 58 41.4
BraA07t30720Z Brassica rapa HOM05D000145 ORTHO05D003732 5.9e-08 60.5 58 41.4
CiPaw.05G048000 Carya illinoinensis HOM05D003275 ORTHO05D003732 5.9e-08 60.5 57 43.9
Migut.B00827 Erythranthe guttata HOM05D003275 ORTHO05D003732 5.9e-08 60.5 62 41.9
PSO170G2758 Papaver somniferum HOM05D003275 ORTHO05D003732 5.9e-08 60.5 57 45.6
BcaB03g15596 Brassica carinata HOM05D003275 ORTHO05D003732 7.7e-08 60.1 57 42.1
COL.COLO4_11783 Corchorus olitorius HOM05D003275 ORTHO05D003732 7.7e-08 60.1 58 43.1
MD08G1233100 Malus domestica HOM05D003275 ORTHO05D003732 1.3e-07 59.3 62 43.5
Zm00001eb362500 Zea mays HOM05D003275 ORTHO05D003732 1.3e-07 59.3 58 43.1
FAN08G1391 Fragaria x ananassa HOM05D003275 ORTHO05D003732 1.7e-07 58.9 57 45.6
FAN18G2082 Fragaria x ananassa HOM05D003275 ORTHO05D003732 1.7e-07 58.9 57 45.6
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 1.7e-07 58.9 52 46.2
RcHm_v2.0_Chr7g0222011 Rosa chinensis HOM05D003275 ORTHO05D003732 1.7e-07 58.9 57 45.6
Solyc01g104080.4 Solanum lycopersicum HOM05D003275 ORTHO05D003732 1.7e-07 58.9 58 41.4
Sopen01g046490 Solanum pennellii HOM05D003275 ORTHO05D003732 1.7e-07 58.9 58 41.4
Carub.0002s1807 Capsella rubella HOM05D003275 ORTHO05D003732 2.3e-07 58.5 57 45.6
Gohir.D13G033600 Gossypium hirsutum HOM05D003275 ORTHO05D003732 2.3e-07 58.5 62 41.9
Gorai.013G038000 Gossypium raimondii HOM05D003275 ORTHO05D003732 2.3e-07 58.5 62 41.9
EL10Ac6g14059 Beta vulgaris HOM05D003275 ORTHO05D003732 2.9e-07 58.2 53 47.2
ClCG09G013890 Citrullus lanatus HOM05D003275 ORTHO05D003732 2.9e-07 58.2 57 43.9
CsaV3_6G037450 Cucumis sativus L. HOM05D003275 ORTHO05D003732 2.9e-07 58.2 57 40.4
Prupe.1G571000 Prunus persica HOM05D003275 ORTHO05D003732 2.9e-07 58.2 62 43.5
CSS0010820 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 3.8e-07 57.8 57 40.4
CSS0034523 Camellia sinensis var. sinensis HOM05D003275 ORTHO05D003732 3.8e-07 57.8 57 40.4
Duzib132G0935 Durio zibethinus HOM05D003275 ORTHO05D003732 3.8e-07 57.8 62 43.5
ECA240G3384 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.8e-07 57.8 58 41.4
PGR044G2065 Punica granatum HOM05D003275 ORTHO05D003732 3.8e-07 57.8 57 42.1
MELO3C014372.2 Cucumis melo HOM05D003275 ORTHO05D003732 5.0e-07 57.4 57 40.4
PSO528G0003 Papaver somniferum HOM05D003275 ORTHO05D003732 5.0e-07 57.4 57 43.9
HPP92_011386 Vanilla planifolia HOM05D003275 ORTHO05D003732 5.0e-07 57.4 57 42.1
ATR0584G052 Amborella trichopoda HOM05D003275 ORTHO05D003732 6.6e-07 57.0 57 42.1
MD08G1232600 Malus domestica HOM05D003275 ORTHO05D003732 6.6e-07 57.0 59 42.4
Sed0021534 Sechium edule HOM05D003275 ORTHO05D003732 6.6e-07 57.0 57 42.1
Cc02_g22610 Coffea canephora HOM05D003275 ORTHO05D003732 8.6e-07 56.6 57 38.6
Eucgr.I02729 Eucalyptus grandis HOM05D003275 ORTHO05D003732 8.6e-07 56.6 57 40.4
HanXRQChr03g0073631 Helianthus annuus HOM05D003275 ORTHO05D003732 8.6e-07 56.6 58 41.4
Os01g0962200 Oryza sativa ssp. japonica HOM05D003275 ORTHO05D003732 8.6e-07 56.6 58 41.4
CANSAT11G1659 Cannabis sativa HOM05D003275 ORTHO05D003732 1.1e-06 56.2 62 41.9
Sc07g0004860 Simmondsia chinensis HOM05D003275 ORTHO05D003732 1.5e-06 55.8 62 40.3
Ah.03g137170 Amaranthus hybridus HOM05D003275 ORTHO05D003732 1.9e-06 55.5 57 43.9
Aqoxy6G00228 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 1.9e-06 55.5 62 41.9
CDE06G1849 Ceratophyllum demersum HOM05D003275 ORTHO05D003732 1.9e-06 55.5 57 42.1
Lsat_1_v5_gn_9_118660 Lactuca sativa HOM05D003275 ORTHO05D003732 4.2e-06 54.3 57 40.4
Lalb_Chr18g0060911 Lupinus albus HOM05D003275 ORTHO05D003732 4.2e-06 54.3 62 40.3
arahy.Tifrunner.gnm1.ann1.9MB0YU Arachis hypogaea HOM05D003275 ORTHO05D003732 7.2e-06 53.5 62 40.3
AUR62041115 Chenopodium quinoa HOM05D003275 ORTHO05D003732 7.2e-06 53.5 58 39.7
arahy.Tifrunner.gnm1.ann1.4G20NP Arachis hypogaea HOM05D003275 ORTHO05D003732 9.5e-06 53.1 62 40.3
Glyma.08G131300 Glycine max HOM05D003275 ORTHO05D003732 9.5e-06 53.1 62 35.5


User provided reference genes

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