Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40708 Trifolium pratense HOM05D004028 ORTHO05D004844 2.4e-107 392.1 190 100.0
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 6.4e-84 314.3 190 80.0
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 6.6e-81 304.3 190 76.8
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 8.9e-78 293.9 190 75.3
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 1.0e-65 253.8 191 67.5
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 5.1e-65 251.5 190 68.9
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 1.1e-64 250.4 192 67.2
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 1.5e-64 250.0 190 68.4
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 1.4e-62 243.4 191 67.5
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 3.8e-60 235.3 191 65.4
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 3.5e-58 228.8 190 65.3
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 2.1e-42 176.4 150 58.7
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 1.9e-40 169.9 150 58.0
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 3.3e-40 169.1 161 54.7
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 7.4e-40 167.9 148 56.8
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 9.6e-40 167.5 176 51.7
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 1.3e-39 167.2 150 56.7
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 4.8e-39 165.2 188 48.9
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.8e-38 163.3 188 50.5
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 4.0e-38 162.2 188 50.0
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 9.0e-38 161.0 187 49.2
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 2.6e-37 159.5 154 53.9
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 2.6e-37 159.5 151 55.6
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 2.2e-36 156.4 170 46.5
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 4.9e-36 155.2 167 44.9
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 4.9e-36 155.2 168 46.4
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 6.5e-36 154.8 185 46.5
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 8.4e-36 154.5 148 49.3
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 9.3e-35 151.0 194 41.2
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 3.5e-34 149.1 170 44.1
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 6.0e-34 148.3 173 45.7
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 7.9e-34 147.9 176 42.6
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 1.3e-33 147.1 172 47.1
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 1.3e-33 147.1 168 45.2
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.3e-33 147.1 178 42.7
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.8e-33 146.7 180 44.4
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 3.9e-33 145.6 150 46.7
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 6.7e-33 144.8 179 43.0
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 8.7e-33 144.4 155 47.1
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 1.1e-32 144.1 148 50.7
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 1.1e-32 144.1 148 50.7
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 1.5e-32 143.7 155 47.1
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 1.9e-32 143.3 155 49.0
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 2.5e-32 142.9 185 39.5
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 3.3e-32 142.5 149 47.0
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 3.3e-32 142.5 174 41.4
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 4.3e-32 142.1 151 47.0
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 5.7e-32 141.7 149 48.3
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 9.6e-32 141.0 149 47.0
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 1.3e-31 140.6 153 43.1
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.3e-31 140.6 185 38.4
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.6e-31 140.2 186 43.5
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 2.1e-31 139.8 156 48.7
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 2.8e-31 139.4 148 49.3
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 3.7e-31 139.0 157 46.5
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 3.7e-31 139.0 181 40.9
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 6.3e-31 138.3 152 46.1
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 6.3e-31 138.3 175 44.0
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.4e-30 137.1 129 55.8
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 4.5e-29 132.1 150 42.0
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 4.5e-29 132.1 155 41.9
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 1.3e-28 130.6 173 41.6
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 1.1e-27 127.5 182 37.4
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 1.1e-27 127.5 156 45.5
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 2.5e-27 126.3 191 39.3
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 7.2e-27 124.8 150 42.7
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.2e-26 124.0 177 40.7
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.3e-25 120.6 184 37.5
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 1.8e-25 120.2 157 42.0
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 2.3e-25 119.8 192 40.6
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 6.7e-25 118.2 167 40.1
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 1.1e-24 117.5 130 48.5
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.1e-24 117.5 191 40.3
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.5e-24 117.1 158 39.2
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 1.9e-24 116.7 150 40.7
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 3.3e-24 115.9 181 39.2
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 3.3e-24 115.9 144 43.8
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 1.3e-23 114.0 171 38.6
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.3e-23 114.0 195 39.0
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 4.8e-23 112.1 137 46.0
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 4.8e-23 112.1 180 35.6
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 6.3e-23 111.7 148 37.2
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 1.1e-22 110.9 180 37.8
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 1.1e-22 110.9 174 37.4
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 1.4e-22 110.5 149 40.9
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 1.4e-22 110.5 162 36.4
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 1.8e-22 110.2 185 37.8
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 5.3e-22 108.6 150 42.0
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 6.9e-22 108.2 145 42.1
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 1.2e-21 107.5 192 37.0
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 1.2e-21 107.5 192 37.0
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 1.5e-21 107.1 152 36.2
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 2.6e-21 106.3 149 38.9
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 3.4e-21 105.9 151 39.1
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 7.7e-21 104.8 146 41.8
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.0e-20 104.4 180 32.8
A06p01590 Brassica napus HOM05D004028 ORTHO05D004844 3.8e-20 102.4 186 36.0
BraA06t23378Z Brassica rapa HOM05D004028 ORTHO05D004844 3.8e-20 102.4 186 36.0
Duzib168G0223 Durio zibethinus HOM05D004028 ORTHO05D004844 3.8e-20 102.4 146 41.1
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 3.8e-20 102.4 116 45.7
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 1.9e-19 100.1 172 34.9
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 2.5e-19 99.8 176 33.5
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 4.2e-19 99.0 150 34.0
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 4.2e-19 99.0 168 34.5
CDE02G1484 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 5.5e-19 98.6 153 34.6
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 9.4e-19 97.8 153 37.3
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 9.4e-19 97.8 179 33.0
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.6e-18 97.1 181 34.3
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 2.1e-18 96.7 146 35.6
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 2.7e-18 96.3 172 34.9
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 6.1e-18 95.1 172 32.6
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 6.1e-18 95.1 152 34.2
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 7.9e-18 94.7 162 32.1
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 1.0e-17 94.4 178 32.0
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.4e-17 94.0 124 39.5
Peaxi162Scf00034g00112 Petunia axillaris HOM05D004028 ORTHO05D004844 1.8e-17 93.6 149 35.6
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 3.0e-17 92.8 149 34.2
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 3.9e-17 92.4 165 33.3
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 5.1e-17 92.0 158 36.1
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 5.1e-17 92.0 153 35.3
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 5.1e-17 92.0 153 35.3
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 5.1e-17 92.0 169 30.8
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 6.7e-17 91.7 163 36.8
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 2.0e-16 90.1 153 34.6
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.5e-16 89.7 189 32.8
AUR62031947 Chenopodium quinoa HOM05D004028 ORTHO05D004844 4.3e-16 89.0 146 34.2
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 4.3e-16 89.0 156 32.1
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 7.4e-16 88.2 185 33.5
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 1.7e-15 87.0 153 34.0
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 4.8e-15 85.5 156 34.6
VMungo1383G1898 Vigna mungo HOM05D004028 ORTHO05D004844 1.4e-14 84.0 80 60.0
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.8e-14 83.6 181 29.3
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.8e-14 83.6 153 32.0
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 3.1e-14 82.8 141 38.3
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 1.5e-13 80.5 185 28.6
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 7.7e-13 78.2 119 36.1
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.9e-11 73.6 154 33.8
Dinv36589 Davidia involucrata HOM05D004028 ORTHO05D004844 2.3e-09 66.6 97 32.0
Sc14g0002730 Simmondsia chinensis HOM05D004028 ORTHO05D004844 8.8e-09 64.7 124 30.6
Os07g0580766 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 2.2e-07 60.1 121 29.8
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 1.1e-06 57.8 51 51.0
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 3.1e-06 56.2 62 43.5


User provided reference genes

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