Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 2.5e-39 164.9 76 100.0
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 1.8e-21 105.5 50 98.0
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 1.8e-21 105.5 50 98.0
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 2.3e-21 105.1 50 96.0
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 3.1e-21 104.8 51 94.1
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 1.2e-20 102.8 50 92.0
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 2.6e-20 101.7 54 85.2
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 1.3e-19 99.4 49 91.8
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 1.7e-19 99.0 49 91.8
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 2.2e-19 98.6 49 91.8
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 2.2e-19 98.6 49 91.8
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 2.9e-19 98.2 49 89.8
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 2.9e-19 98.2 49 89.8
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 2.9e-19 98.2 49 89.8
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 3.7e-19 97.8 49 91.8
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 4.9e-19 97.4 51 84.3
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 4.9e-19 97.4 49 85.7
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 4.9e-19 97.4 49 85.7
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 4.9e-19 97.4 49 87.8
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 4.9e-19 97.4 49 89.8
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 4.9e-19 97.4 49 89.8
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 6.4e-19 97.1 49 87.8
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 8.3e-19 96.7 49 85.7
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 8.3e-19 96.7 49 89.8
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 8.3e-19 96.7 49 89.8
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 8.3e-19 96.7 49 87.8
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 8.3e-19 96.7 49 85.7
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.1e-18 96.3 49 85.7
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.1e-18 96.3 49 85.7
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 1.1e-18 96.3 49 87.8
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.1e-18 96.3 49 89.8
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 85.7
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 85.7
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 85.7
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 85.7
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 87.8
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 87.8
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 1.4e-18 95.9 49 85.7
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 1.9e-18 95.5 49 85.7
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.9e-18 95.5 49 85.7
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 2.4e-18 95.1 48 87.5
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 2.4e-18 95.1 49 85.7
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 2.4e-18 95.1 49 85.7
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 2.4e-18 95.1 49 83.7
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 3.2e-18 94.7 49 85.7
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 4.1e-18 94.4 49 85.7
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 5.4e-18 94.0 49 83.7
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 5.4e-18 94.0 49 85.7
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 5.4e-18 94.0 49 87.8
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 7.1e-18 93.6 49 83.7
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 1.2e-17 92.8 48 87.5
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 1.2e-17 92.8 51 80.4
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 1.2e-17 92.8 49 81.6
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 1.6e-17 92.4 51 76.5
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 1.6e-17 92.4 48 85.4
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 1.6e-17 92.4 49 83.7
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 1.6e-17 92.4 49 81.6
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 1.6e-17 92.4 49 83.7
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 2.1e-17 92.0 49 83.7
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 2.1e-17 92.0 49 83.7
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 2.1e-17 92.0 49 83.7
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 2.1e-17 92.0 49 85.7
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 2.1e-17 92.0 49 83.7
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 2.7e-17 91.7 50 86.0
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 3.5e-17 91.3 49 83.7
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 6.0e-17 90.5 49 81.6
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 7.8e-17 90.1 49 81.6
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 1.3e-16 89.4 49 77.6
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 1.3e-16 89.4 48 83.3
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.3e-16 89.4 49 79.6
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 3.0e-16 88.2 55 76.4
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 6.6e-16 87.0 49 79.6
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 6.6e-16 87.0 49 79.6
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 6.6e-16 87.0 48 81.2
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 8.6e-16 86.7 49 75.5
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 1.9e-15 85.5 46 84.8
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 1.9e-15 85.5 49 75.5
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 1.9e-15 85.5 49 77.6
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 1.9e-15 85.5 49 77.6
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 2.5e-15 85.1 49 75.5
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 3.3e-15 84.7 49 77.6
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 3.3e-15 84.7 49 75.5
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 3.3e-15 84.7 49 77.6
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 5.6e-15 84.0 49 75.5
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 5.6e-15 84.0 49 77.6
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 7.3e-15 83.6 49 73.5
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 7.3e-15 83.6 49 73.5
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 7.3e-15 83.6 49 73.5
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 9.5e-15 83.2 49 75.5
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 2.1e-14 82.0 47 78.7
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 2.8e-14 81.6 47 80.9
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 3.6e-14 81.3 49 73.5
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 3.6e-14 81.3 49 73.5
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 4.7e-14 80.9 46 76.1
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 4.7e-14 80.9 48 79.2
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 4.7e-14 80.9 49 73.5
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 6.2e-14 80.5 49 71.4
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 6.2e-14 80.5 49 71.4
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 6.2e-14 80.5 49 71.4
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 6.2e-14 80.5 49 71.4
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 6.2e-14 80.5 49 71.4
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 6.2e-14 80.5 48 75.0
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 2.4e-13 78.6 95 46.3
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 4.0e-13 77.8 46 73.9
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 6.8e-13 77.0 67 58.2
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 6.8e-13 77.0 49 65.3
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 6.8e-13 77.0 49 69.4
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 8.9e-13 76.6 49 67.3
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 5.8e-12 73.9 49 63.3
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 2.2e-11 72.0 48 64.6
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 2.9e-11 71.6 48 62.5
RcHm_v2.0_Chr2g0160171 Rosa chinensis HOM05D005148 ORTHO05D006218 3.2e-10 68.2 49 61.2
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 2.1e-09 65.5 47 59.6
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 2.1e-09 65.5 34 85.3
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.0e-08 63.2 70 47.1
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 1.3e-08 62.8 38 68.4
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 1.9e-07 58.9 48 56.2
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 7.3e-07 57.0 59 49.2


User provided reference genes

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