Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40298 Trifolium pratense HOM05D003169 ORTHO05D003700 1.6e-46 189.1 96 100.0
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 4.3e-28 127.9 71 90.1
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 9.8e-25 116.7 71 80.3
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 6.4e-24 114.0 71 78.9
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 1.9e-23 112.5 71 76.1
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.2e-22 109.8 71 77.5
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 2.7e-22 108.6 71 77.5
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 2.7e-22 108.6 71 77.5
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 3.9e-21 104.8 71 70.4
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 1.2e-19 99.8 71 70.4
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 2.1e-19 99.0 71 69.0
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 2.1e-19 99.0 71 69.0
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 2.1e-19 99.0 71 71.8
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-19 99.0 71 70.4
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 2.8e-19 98.6 71 70.4
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 3.6e-19 98.2 71 69.0
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 3.6e-19 98.2 71 69.0
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 4.7e-19 97.8 71 70.4
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 8.1e-19 97.1 71 69.0
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 1.8e-18 95.9 89 58.4
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 1.8e-18 95.9 71 67.6
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 2.3e-18 95.5 71 67.6
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.3e-18 95.5 71 67.6
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 3.1e-18 95.1 71 66.2
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 3.1e-18 95.1 71 66.2
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 4.0e-18 94.7 71 66.2
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 4.0e-18 94.7 71 66.2
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 5.2e-18 94.4 71 66.2
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 6.8e-18 94.0 71 66.2
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 8.9e-18 93.6 71 66.2
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 8.9e-18 93.6 72 63.9
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 1.2e-17 93.2 71 66.2
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 1.2e-17 93.2 71 66.2
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.2e-17 93.2 71 66.2
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 1.2e-17 93.2 71 63.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 2.0e-17 92.4 71 63.4
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 2.0e-17 92.4 71 64.8
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 2.6e-17 92.0 71 63.4
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 2.6e-17 92.0 71 63.4
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 2.6e-17 92.0 71 63.4
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 2.6e-17 92.0 71 63.4
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 62.0
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 64.8
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 64.8
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 64.8
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 64.8
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 64.8
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 63.4
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 3.4e-17 91.7 71 63.4
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 4.4e-17 91.3 71 62.0
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 5.8e-17 90.9 71 63.4
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 7.6e-17 90.5 71 60.6
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 7.6e-17 90.5 71 62.0
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 7.6e-17 90.5 71 63.4
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 9.9e-17 90.1 71 60.6
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.3e-16 89.7 71 62.0
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 1.7e-16 89.4 71 62.0
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 1.7e-16 89.4 71 62.0
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 1.7e-16 89.4 71 62.0
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 2.2e-16 89.0 71 60.6
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 2.2e-16 89.0 71 60.6
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 2.2e-16 89.0 71 60.6
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 2.2e-16 89.0 71 60.6
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.9e-16 88.6 81 53.1
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 2.9e-16 88.6 71 62.0
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.9e-16 88.6 71 60.6
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.9e-16 88.6 71 59.2
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 3.7e-16 88.2 72 63.9
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 59.2
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 63.4
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 63.4
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 59.2
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 60.6
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 64.8
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 3.7e-16 88.2 71 62.0
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 4.9e-16 87.8 71 62.0
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 4.9e-16 87.8 71 62.0
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 6.4e-16 87.4 71 66.2
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 6.4e-16 87.4 71 59.2
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 8.3e-16 87.0 71 59.2
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 8.3e-16 87.0 71 62.0
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 8.3e-16 87.0 71 62.0
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.4e-15 86.3 71 57.7
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 2.4e-15 85.5 71 59.2
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.4e-15 85.5 71 57.7
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.4e-15 85.5 71 59.2
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 4.1e-15 84.7 71 59.2
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 5.4e-15 84.3 71 60.6
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 9.2e-15 83.6 95 51.6
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 9.2e-15 83.6 71 53.5
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 1.2e-14 83.2 71 57.7
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.2e-14 83.2 71 57.7
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 2.1e-14 82.4 71 56.3
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.7e-14 82.0 71 56.3
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 2.7e-14 82.0 71 56.3
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 3.5e-14 81.6 71 53.5
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 6.0e-14 80.9 72 51.4
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 6.0e-14 80.9 71 56.3
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 1.0e-13 80.1 71 56.3
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.0e-13 80.1 88 45.5
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 1.7e-13 79.3 71 52.1
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 2.3e-13 79.0 71 53.5
Nitab4.5_0009958g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.0e-13 78.6 64 59.4
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 3.9e-13 78.2 66 54.5
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 3.9e-13 78.2 71 56.3
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 5.1e-13 77.8 71 50.7
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 6.6e-13 77.4 71 56.3
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 6.6e-13 77.4 71 56.3
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 6.6e-13 77.4 71 49.3
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 8.6e-13 77.0 71 53.5
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 1.9e-12 75.9 71 54.9
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 1.9e-12 75.9 71 54.9
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 2.5e-12 75.5 71 52.1
VMungo1127G0538 Vigna mungo HOM05D003169 ORTHO05D003700 1.2e-11 73.2 52 71.2
Ciclev10006112m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.6e-11 72.8 60 61.7
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 1.6e-11 72.8 71 53.5
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 3.6e-11 71.6 73 50.7
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.0e-09 65.9 52 61.5
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 4.4e-09 64.7 105 40.0
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 7.6e-09 63.9 73 41.1
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 1.3e-08 63.2 86 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 3.8e-08 61.6 72 41.7
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 4.9e-08 61.2 32 90.6
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 6.4e-08 60.8 75 41.3
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 6.4e-08 60.8 73 43.8
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 9.3e-07 57.0 71 47.9


User provided reference genes

Program Settings