Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 3.6e-70 268.1 131 100.0
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 5.2e-45 184.5 119 80.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.9e-42 176.0 119 79.0
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.2e-41 173.3 121 75.2
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.7e-41 172.2 121 77.7
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.1e-38 162.5 129 69.8
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 3.1e-37 158.7 137 64.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.2e-36 156.8 129 67.4
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 2.0e-36 156.0 138 64.5
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 8.4e-35 150.6 121 66.1
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.1e-34 150.2 121 66.1
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 1.9e-31 139.4 125 62.4
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.8e-29 132.9 117 61.5
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.9e-29 131.0 121 60.3
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 5.8e-28 127.9 122 57.4
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 3.2e-26 122.1 121 52.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 5.5e-26 121.3 139 50.4
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 7.1e-26 120.9 123 54.5
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 7.1e-26 120.9 119 54.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.7e-25 119.0 122 52.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 6.0e-25 117.9 120 53.3
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 7.9e-25 117.5 122 53.3
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 3.9e-24 115.2 130 50.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 6.7e-24 114.4 121 50.4
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 8.7e-24 114.0 121 50.4
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 8.7e-24 114.0 121 52.1
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.5e-23 113.2 122 52.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.5e-23 113.2 120 51.7
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 5.6e-23 111.3 122 52.5
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 7.4e-23 110.9 121 49.6
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 7.4e-23 110.9 121 52.9
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 7.4e-23 110.9 122 54.1
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 9.6e-23 110.5 122 50.8
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.6e-22 109.8 122 52.5
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.6e-22 109.8 120 48.3
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.1e-22 109.4 123 52.0
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.7e-22 108.6 122 48.4
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.7e-22 108.6 121 49.6
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 4.8e-22 108.2 122 50.8
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 4.8e-22 108.2 122 50.8
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 8.1e-22 107.5 121 50.4
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.1e-21 107.1 122 49.2
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.4e-21 106.7 122 49.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.4e-21 106.7 122 50.0
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.8e-21 106.3 122 54.1
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.8e-21 106.3 136 48.5
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 2.4e-21 105.9 122 49.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.1e-21 105.5 122 50.0
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.1e-21 105.5 131 49.6
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 4.0e-21 105.1 131 50.4
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 5.3e-21 104.8 120 45.8
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 6.9e-21 104.4 123 49.6
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 9.0e-21 104.0 122 50.8
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.2e-20 103.6 131 48.1
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-20 103.2 120 45.8
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.0e-20 102.8 120 45.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 2.0e-20 102.8 120 45.0
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.4e-20 102.1 122 49.2
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 3.4e-20 102.1 121 48.8
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 4.5e-20 101.7 120 44.2
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.8e-20 101.3 131 49.6
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.3e-19 100.1 109 48.6
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.2e-19 99.4 141 45.4
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.9e-19 99.0 131 49.6
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 3.8e-19 98.6 141 45.4
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.9e-19 98.2 124 49.2
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 4.9e-19 98.2 131 48.9
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.4e-19 97.4 122 48.4
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.1e-18 97.1 122 48.4
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.4e-18 96.7 131 47.3
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.9e-18 96.3 123 48.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.9e-18 96.3 123 46.3
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.9e-18 96.3 123 46.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.9e-18 96.3 122 48.4
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.5e-18 95.9 131 48.1
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.5e-18 95.9 122 48.4
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 2.5e-18 95.9 122 50.8
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.2e-18 95.5 118 48.3
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 5.5e-18 94.7 122 47.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 9.3e-18 94.0 121 47.1
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-17 93.6 128 45.3
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 2.7e-17 92.4 122 46.7
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 3.5e-17 92.0 123 45.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 4.6e-17 91.7 108 51.9
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 7.9e-17 90.9 129 45.0
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 7.9e-17 90.9 124 45.2
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 7.9e-17 90.9 123 46.3
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.0e-16 90.5 124 47.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.3e-16 90.1 121 46.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.8e-16 89.7 108 49.1
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 3.0e-16 89.0 111 47.7
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 3.9e-16 88.6 121 44.6
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 5.1e-16 88.2 124 45.2
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 6.7e-16 87.8 80 62.5
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 6.7e-16 87.8 117 47.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.5e-15 85.9 119 43.7
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 4.3e-15 85.1 122 44.3
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 9.6e-15 84.0 124 41.9
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.1e-14 82.8 141 39.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-14 82.8 130 42.3
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.8e-14 82.4 130 40.8
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.7e-14 82.0 126 40.5
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 4.8e-14 81.6 122 43.4
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 8.2e-14 80.9 122 42.6
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-13 80.5 126 40.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-13 80.5 130 40.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.8e-13 79.7 145 41.4
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.1e-13 79.0 118 42.4
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 4.1e-13 78.6 153 37.3
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 9.0e-13 77.4 124 37.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 3.4e-12 75.5 135 38.5
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.6e-12 74.3 96 45.8
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.0e-11 73.9 121 38.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.0e-11 73.9 120 40.8
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-11 73.6 124 38.7
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.7e-11 73.2 110 44.5
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.9e-11 72.4 126 41.3
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 6.5e-11 71.2 122 41.8
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 6.5e-11 71.2 123 38.2
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.4e-10 70.1 113 41.6
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.9e-10 69.7 101 38.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.5e-10 69.3 70 48.6
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.5e-10 68.2 95 50.5
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 8.7e-08 60.8 139 31.7
TPR.G12791 Trifolium pratense HOM05D000084 ORTHO05D000363 6.3e-06 54.7 24 95.8


User provided reference genes

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