Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39975 Trifolium pratense HOM05D003882 ORTHO05D004598 1.4e-66 256.1 126 100.0
Medtr1g016110 Medicago truncatula HOM05D003882 ORTHO05D004598 1.1e-63 246.5 126 95.2
Medtr1g019620 Medicago truncatula HOM05D003882 ORTHO05D004598 9.1e-63 243.4 126 94.4
Psat6g020160 Pisum sativum HOM05D003882 ORTHO05D004598 2.0e-62 242.3 126 93.7
Ca_13161_v3 Cicer arietinum L. HOM05D003882 ORTHO05D004598 6.6e-61 237.3 124 90.3
TPR.G13098 Trifolium pratense HOM05D003882 ORTHO05D004598 1.2e-59 233.0 126 89.7
arahy.Tifrunner.gnm1.ann1.2L480B Arachis hypogaea HOM05D003882 ORTHO05D004598 8.3e-56 220.3 125 83.2
arahy.Tifrunner.gnm1.ann1.61M3XX Arachis hypogaea HOM05D003882 ORTHO05D004598 2.4e-55 218.8 125 82.4
Lj1g0003723 Lotus japonicus HOM05D003882 ORTHO05D004598 2.7e-54 215.3 126 80.2
Phvul.001G035900 Phaseolus vulgaris HOM05D003882 ORTHO05D004598 5.9e-54 214.2 125 80.0
Lalb_Chr16g0386401 Lupinus albus HOM05D003882 ORTHO05D004598 3.9e-53 211.5 125 81.6
Glyma.14G095000 Glycine max HOM05D003882 ORTHO05D004598 1.5e-52 209.5 125 78.4
Glyma.17G228500 Glycine max HOM05D003882 ORTHO05D004598 1.9e-52 209.1 125 78.4
Lalb_Chr05g0220891 Lupinus albus HOM05D003882 ORTHO05D004598 7.3e-52 207.2 126 78.6
VMungo0647G1296 Vigna mungo HOM05D003882 ORTHO05D004598 1.2e-51 206.5 122 77.9
Haze_14818 Corylus avellana HOM05D003882 ORTHO05D004598 5.8e-49 197.6 124 75.8
Sed0009517 Sechium edule HOM05D003882 ORTHO05D004598 5.8e-49 197.6 124 75.0
Sed0012212 Sechium edule HOM05D003882 ORTHO05D004598 7.5e-49 197.2 124 75.0
Cfa007272 Carpinus fangiana HOM05D003882 ORTHO05D004598 1.3e-48 196.4 124 75.0
Hma1.2p1_0227F.1_g095890 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 1.3e-48 196.4 120 77.5
Dinv41146 Davidia involucrata HOM05D003882 ORTHO05D004598 1.7e-48 196.1 118 77.1
Lj1g0002107 Lotus japonicus HOM05D003882 ORTHO05D004598 2.2e-48 195.7 120 75.8
ClCG04G001410 Citrullus lanatus HOM05D003882 ORTHO05D004598 2.9e-48 195.3 124 74.2
LjContig00155g0003661 Lotus japonicus HOM05D003882 ORTHO05D004598 6.4e-48 194.1 120 74.2
CsaV3_4G031060 Cucumis sativus L. HOM05D003882 ORTHO05D004598 1.4e-47 193.0 124 74.2
Eucgr.D01084 Eucalyptus grandis HOM05D003882 ORTHO05D004598 1.9e-47 192.6 124 72.6
Peaxi162Scf00169g00820 Petunia axillaris HOM05D003882 ORTHO05D004598 2.4e-47 192.2 126 72.2
Prupe.1G532900 Prunus persica HOM05D003882 ORTHO05D004598 2.4e-47 192.2 124 71.0
Solyc12g096690.2 Solanum lycopersicum HOM05D003882 ORTHO05D004598 3.2e-47 191.8 124 71.8
MELO3C008983.2 Cucumis melo HOM05D003882 ORTHO05D004598 4.1e-47 191.4 124 73.4
Sopen12g032520 Solanum pennellii HOM05D003882 ORTHO05D004598 4.1e-47 191.4 124 71.8
CiPaw.04G033400 Carya illinoinensis HOM05D003882 ORTHO05D004598 5.4e-47 191.0 124 73.4
Nitab4.5_0005160g0070 Nicotiana tabacum HOM05D003882 ORTHO05D004598 1.6e-46 189.5 126 71.4
Prupe.3G300400 Prunus persica HOM05D003882 ORTHO05D004598 1.6e-46 189.5 124 70.2
CSS0015034 Camellia sinensis var. sinensis HOM05D001584 ORTHO05D004598 2.0e-46 189.1 118 73.7
Nitab4.5_0001961g0110 Nicotiana tabacum HOM05D003882 ORTHO05D004598 2.0e-46 189.1 126 71.4
QL09p018923 Quercus lobata HOM05D003882 ORTHO05D004598 2.7e-46 188.7 124 71.8
CANSAT64G0400 Cannabis sativa HOM05D003882 ORTHO05D004598 3.5e-46 188.3 124 71.8
QL02p072792 Quercus lobata HOM05D003882 ORTHO05D004598 6.0e-46 187.6 124 72.6
CiPaw.03G050800 Carya illinoinensis HOM05D003882 ORTHO05D004598 7.8e-46 187.2 124 71.0
CAN.G566.35 Capsicum annuum HOM05D003882 ORTHO05D004598 1.0e-45 186.8 124 71.0
Peaxi162Scf00046g02622 Petunia axillaris HOM05D003882 ORTHO05D004598 1.0e-45 186.8 126 70.6
PGR142G3649 Punica granatum HOM05D003882 ORTHO05D004598 1.3e-45 186.4 122 70.5
PGSC0003DMG401029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 1.7e-45 186.0 125 70.4
PGSC0003DMG402029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 1.7e-45 186.0 125 70.4
TAR629G1857 Trochodendron aralioides HOM05D003882 ORTHO05D004598 3.9e-45 184.9 124 69.4
QL06p031218 Quercus lobata HOM05D003882 ORTHO05D004598 6.6e-45 184.1 124 70.2
SalBow8G1058 Salvia bowleyana HOM05D003882 ORTHO05D004598 8.6e-45 183.7 118 72.9
Duzib177G1128 Durio zibethinus HOM05D003882 ORTHO05D004598 1.1e-44 183.3 118 75.4
Cc00_g03690 Coffea canephora HOM05D003882 ORTHO05D004598 1.5e-44 183.0 124 68.5
Actinidia06312 Actinidia chinensis HOM05D003882 ORTHO05D004598 1.9e-44 182.6 124 69.4
Actinidia36170 Actinidia chinensis HOM05D003882 ORTHO05D004598 2.5e-44 182.2 126 67.5
FvH4_6g52730 Fragaria vesca HOM05D003882 ORTHO05D004598 3.3e-44 181.8 125 68.8
FAN14G5526 Fragaria x ananassa HOM05D003882 ORTHO05D004598 3.3e-44 181.8 125 68.8
MSTRG.24071 Avicennia marina HOM05D003882 ORTHO05D004598 4.3e-44 181.4 118 70.3
Cc00_g01950 Coffea canephora HOM05D003882 ORTHO05D004598 5.6e-44 181.0 124 67.7
Lju41A47T20 Lonicera japonica HOM05D003882 ORTHO05D004598 7.3e-44 180.6 116 71.6
RcHm_v2.0_Chr2g0174341 Rosa chinensis HOM05D003882 ORTHO05D004598 7.3e-44 180.6 125 68.8
FAN09G0633 Fragaria x ananassa HOM05D003882 ORTHO05D004598 1.2e-43 179.9 125 68.0
COL.COLO4_15327 Corchorus olitorius HOM05D003882 ORTHO05D004598 1.6e-43 179.5 118 72.0
Gohir.A09G033520 Gossypium hirsutum HOM05D003882 ORTHO05D004598 1.6e-43 179.5 118 69.5
Gorai.006G038800 Gossypium raimondii HOM05D003882 ORTHO05D004598 1.6e-43 179.5 118 69.5
MD17G1017500 Malus domestica HOM05D003882 ORTHO05D004598 1.6e-43 179.5 124 66.1
PSO675G6248 Papaver somniferum HOM05D003882 ORTHO05D004598 1.6e-43 179.5 126 65.9
CSS0000820 Camellia sinensis var. sinensis HOM05D001584 ORTHO05D004598 2.1e-43 179.1 111 73.9
Thecc.04G028000 Theobroma cacao HOM05D003882 ORTHO05D004598 2.1e-43 179.1 118 72.9
Thecc.05G285600 Theobroma cacao HOM05D003882 ORTHO05D004598 2.1e-43 179.1 118 72.9
Atru.chr6.2490 Acer truncatum HOM05D003882 ORTHO05D004598 2.8e-43 178.7 121 72.7
CDE09G0216 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 3.6e-43 178.3 119 67.2
AUR62002701 Chenopodium quinoa HOM05D003882 ORTHO05D004598 3.6e-43 178.3 118 69.5
Gohir.D09G033800 Gossypium hirsutum HOM05D003882 ORTHO05D004598 3.6e-43 178.3 118 69.5
Aa31LG11G15090 Aethionema arabicum HOM05D003882 ORTHO05D004598 4.7e-43 177.9 118 70.3
AUR62014165 Chenopodium quinoa HOM05D003882 ORTHO05D004598 4.7e-43 177.9 118 69.5
AUR62014166 Chenopodium quinoa HOM05D003882 ORTHO05D004598 4.7e-43 177.9 118 69.5
Migut.H00063 Erythranthe guttata HOM05D003882 ORTHO05D004598 4.7e-43 177.9 122 71.3
Oeu058762.1 Olea europaea HOM05D003882 ORTHO05D004598 4.7e-43 177.9 126 66.7
Potri.001G336900 Populus trichocarpa HOM05D003882 ORTHO05D004598 4.7e-43 177.9 118 71.2
MSTRG.3108 Avicennia marina HOM05D003882 ORTHO05D004598 6.2e-43 177.6 124 66.1
Sabra16G0217800 Salix brachista HOM05D003882 ORTHO05D004598 8.1e-43 177.2 118 70.3
PSO017G7334 Papaver somniferum HOM05D003882 ORTHO05D004598 1.1e-42 176.8 126 65.1
EL10Ac7g16174 Beta vulgaris HOM05D003882 ORTHO05D004598 1.4e-42 176.4 119 70.6
Duzib264G0449 Durio zibethinus HOM05D003882 ORTHO05D004598 1.4e-42 176.4 118 71.2
DCAR_015078 Daucus carota HOM05D003882 ORTHO05D004598 1.8e-42 176.0 120 69.2
DCAR_005600 Daucus carota HOM05D003882 ORTHO05D004598 3.1e-42 175.3 120 68.3
FAN05G0109 Fragaria x ananassa HOM05D003882 ORTHO05D004598 3.1e-42 175.3 125 68.0
PSO541G0693 Papaver somniferum HOM05D003882 ORTHO05D004598 3.1e-42 175.3 126 63.5
TWI18G0330 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 4.0e-42 174.9 118 69.5
CDE02G2967 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 5.2e-42 174.5 119 66.4
Lsat_1_v5_gn_0_8180 Lactuca sativa HOM05D003882 ORTHO05D004598 5.2e-42 174.5 121 66.9
TAR371G0752 Trochodendron aralioides HOM05D003882 ORTHO05D004598 5.2e-42 174.5 124 66.1
Duzib106G0341 Durio zibethinus HOM05D003882 ORTHO05D004598 6.8e-42 174.1 116 72.4
TWI36G1591 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 8.9e-42 173.7 121 66.1
MD09G1017000 Malus domestica HOM05D003882 ORTHO05D004598 1.2e-41 173.3 124 64.5
Manes.15G156600 Manihot esculenta HOM05D003882 ORTHO05D004598 1.5e-41 172.9 118 70.3
THA.LOC104802387 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 1.5e-41 172.9 118 68.6
Os04g0485400 Oryza sativa ssp. japonica HOM05D003882 ORTHO05D004598 2.0e-41 172.6 120 69.2
QL04p003729 Quercus lobata HOM05D003882 ORTHO05D004598 4.4e-41 171.4 124 66.1
Zm00001eb183970 Zea mays HOM05D003882 ORTHO05D004598 4.4e-41 171.4 120 69.2
Aqoxy6G00237 Aquilegia oxysepala HOM05D003882 ORTHO05D004598 7.5e-41 170.6 126 62.7
MBI17_g07068_MAGBIO Magnolia biondii HOM05D003882 ORTHO05D004598 1.7e-40 169.5 117 65.8
Zm00001eb246360 Zea mays HOM05D003882 ORTHO05D004598 2.2e-40 169.1 119 67.2
Carub.0008s1098 Capsella rubella HOM05D003882 ORTHO05D004598 2.9e-40 168.7 122 66.4
Os02g0601100 Oryza sativa ssp. japonica HOM05D003882 ORTHO05D004598 2.9e-40 168.7 116 69.0
Ciclev10015755m.g Citrus clementina HOM05D003882 ORTHO05D004598 3.7e-40 168.3 118 70.3
AL8G25150 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 1.1e-39 166.8 119 66.4
Nitab4.5_0000136g0010 Nicotiana tabacum HOM05D003882 ORTHO05D004598 1.4e-39 166.4 100 77.0
Hund27387 Selenicereus undatus HOM05D003882 ORTHO05D004598 2.4e-39 165.6 118 63.6
AL2G37760 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 3.2e-39 165.2 119 65.5
CSS0002062 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D003383 3.2e-39 165.2 124 65.3
AT5G50960 Arabidopsis thaliana HOM05D003882 ORTHO05D004598 7.1e-39 164.1 122 63.1
Sp3g17870 Schrenkiella parvula HOM05D003882 ORTHO05D004598 4.6e-38 161.4 119 64.7
ATR0782G139 Amborella trichopoda HOM05D003882 ORTHO05D004598 1.7e-37 159.5 118 61.0
A05p29270 Brassica napus HOM05D003882 ORTHO05D004598 3.0e-37 158.7 119 66.4
BraA05t21810Z Brassica rapa HOM05D003882 ORTHO05D004598 3.0e-37 158.7 119 66.4
Sc14g0001460 Simmondsia chinensis HOM05D003882 ORTHO05D004598 3.9e-37 158.3 122 62.3
C05p44780 Brassica napus HOM05D003882 ORTHO05D004598 5.1e-37 157.9 119 66.4
BolC5t33204H Brassica oleracea HOM05D003882 ORTHO05D004598 5.1e-37 157.9 119 66.4
SHI03873 Sapria himalayana HOM05D003882 ORTHO05D004598 6.6e-37 157.5 122 62.3
CARHR257250 Cardamine hirsuta HOM05D003882 ORTHO05D004598 1.1e-36 156.8 121 63.6
HanXRQChr11g0321651 Helianthus annuus HOM05D003882 ORTHO05D004598 3.3e-36 155.2 126 61.1
HPP92_019923 Vanilla planifolia HOM05D003882 ORTHO05D004598 9.5e-36 153.7 118 61.9
HanXRQChr15g0470031 Helianthus annuus HOM05D003882 ORTHO05D004598 1.6e-35 152.9 127 59.8
SEGI_31184 Sequoiadendron giganteum HOM05D003882 ORTHO05D004598 1.6e-35 152.9 117 62.4
THA.LOC104820947 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 1.4e-34 149.8 120 60.0
BcaC06g30598 Brassica carinata HOM05D003882 ORTHO05D004598 2.3e-34 149.1 120 61.7
A01p34890 Brassica napus HOM05D003882 ORTHO05D004598 8.9e-34 147.1 120 60.8
HanXRQChr05g0147771 Helianthus annuus HOM05D003882 ORTHO05D004598 1.2e-33 146.7 121 62.0
C01p44280 Brassica napus HOM05D003882 ORTHO05D004598 1.5e-33 146.4 120 60.8
BolC1t04394H Brassica oleracea HOM05D003882 ORTHO05D004598 1.5e-33 146.4 120 60.8
BcaNung02678 Brassica carinata HOM05D003882 ORTHO05D004598 2.0e-33 146.0 120 62.5
Nitab4.5_0000668g0140 Nicotiana tabacum HOM05D003882 ORTHO05D004598 2.6e-33 145.6 100 69.0
Thhalv10024147m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 3.4e-33 145.2 120 60.0
BcaC05g28398 Brassica carinata HOM05D003882 ORTHO05D004598 5.8e-33 144.4 110 64.5
Hma1.2p1_1484F.1_g286340 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 7.6e-33 144.1 88 75.0
BcaC05g24912 Brassica carinata HOM05D003882 ORTHO05D004598 9.9e-33 143.7 120 60.0
AagrBONN_evm.TU.Sc2ySwM_344.3627 Anthoceros agrestis HOM05D003882 ORTHO05D004598 8.4e-32 140.6 119 55.5
ECA232G3599 Erigeron canadensis HOM05D003882 ORTHO05D004598 1.9e-31 139.4 116 62.1
unitig_899.g15454 Utricularia gibba HOM05D003882 ORTHO05D004598 2.4e-31 139.0 113 58.4
HanXRQChr05g0147751 Helianthus annuus HOM05D003882 ORTHO05D004598 3.2e-31 138.7 117 56.4
C07p50020 Brassica napus HOM05D003882 ORTHO05D000252 1.2e-30 136.7 114 60.5
BraA03t14240Z Brassica rapa HOM05D003882 ORTHO05D004598 2.1e-30 136.0 114 60.5
CARHR257230 Cardamine hirsuta HOM05D003882 ORTHO05D004598 2.1e-30 136.0 121 58.7
Thhalv10021039m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 1.7e-29 132.9 119 52.9
Cpa.g.sc130.36 Carica papaya HOM05D003882 ORTHO05D004598 3.0e-29 132.1 79 73.4
BraA01t03571Z Brassica rapa HOM05D003882 ORTHO05D004598 6.6e-29 131.0 105 61.9
Lj1g0011810 Lotus japonicus HOM05D003882 ORTHO05D004598 2.5e-28 129.0 72 81.9
Mapoly0071s0001 Marchantia polymorpha HOM05D003882 ORTHO05D004598 2.5e-28 129.0 120 55.0
GSVIVG01001845001 Vitis vinifera HOM05D003882 ORTHO05D004598 2.1e-27 125.9 126 54.8
Pp3c11_10240 Physcomitrium patens HOM05D003882 ORTHO05D004598 8.1e-27 124.0 121 46.3
SMO301G0043 Selaginella moellendorffii HOM05D003882 ORTHO05D004598 3.4e-25 118.6 123 51.2
BolC7t45504H Brassica oleracea HOM05D003882 ORTHO05D000252 9.9e-25 117.1 104 57.7
DCAR_011293 Daucus carota HOM05D003882 ORTHO05D004598 2.9e-24 115.5 79 67.1
BcaC09g48941 Brassica carinata HOM05D003882 ORTHO05D004598 5.4e-23 111.3 120 51.7
Lj1g0006363 Lotus japonicus HOM05D003882 ORTHO05D004598 1.6e-19 99.8 112 50.9
CBR_g50436 Chara braunii HOM05D003882 ORTHO05D004598 2.1e-19 99.4 174 36.2
A05p29250 Brassica napus HOM05D003882 ORTHO05D004598 8.4e-16 87.4 80 57.5
Sp7g17580 Schrenkiella parvula HOM05D003882 ORTHO05D004598 6.0e-14 81.3 82 53.7
MCO01G078 Micromonas commoda HOM05D003882 ORTHO05D004598 2.4e-10 69.3 142 32.4
PRCOL_00004632 Prasinoderma coloniale HOM05D003882 ORTHO05D004598 6.9e-10 67.8 120 35.8
Cre12.g494400 Chlamydomonas reinhardtii HOM05D003882 ORTHO05D004598 1.3e-08 63.5 129 35.7
Glyma.10G142400 Glycine max HOM05D003882 ORTHO05D004598 5.5e-07 58.2 45 62.2


User provided reference genes

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