Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39949 Trifolium pratense HOM05D001129 ORTHO05D003814 3.7e-41 171.0 81 100.0
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 4.2e-37 157.5 81 87.7
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 2.1e-36 155.2 81 91.4
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.0e-35 152.9 81 84.0
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 1.2e-34 149.4 81 84.0
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 2.6e-34 148.3 81 84.0
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 9.8e-34 146.4 81 82.7
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 2.2e-33 145.2 76 88.2
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.1e-32 142.9 81 77.8
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 5.0e-30 134.0 81 72.8
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 1.5e-29 132.5 81 71.6
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 3.3e-29 131.3 80 80.0
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 3.3e-29 131.3 81 72.8
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.3e-29 131.0 81 74.1
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.8e-28 128.3 81 71.6
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 2.8e-28 128.3 81 72.8
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 2.8e-28 128.3 81 71.6
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 4.7e-28 127.5 81 70.4
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 4.7e-28 127.5 81 70.4
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 4.7e-28 127.5 81 70.4
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 4.7e-28 127.5 81 70.4
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 6.1e-28 127.1 81 70.4
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 6.1e-28 127.1 81 70.4
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 6.1e-28 127.1 81 70.4
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.8e-27 125.6 80 71.2
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 3.0e-27 124.8 81 71.6
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 3.0e-27 124.8 81 72.8
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 5.2e-27 124.0 78 70.5
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 5.2e-27 124.0 81 69.1
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 5.2e-27 124.0 81 69.1
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 6.8e-27 123.6 81 69.1
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 6.8e-27 123.6 81 70.4
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 8.9e-27 123.2 81 70.4
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.2e-26 122.9 80 72.5
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 1.2e-26 122.9 81 67.9
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 2.6e-26 121.7 81 64.2
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 3.4e-26 121.3 81 67.9
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 3.4e-26 121.3 81 67.9
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 4.4e-26 120.9 81 66.7
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 4.4e-26 120.9 81 66.7
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 4.4e-26 120.9 81 67.9
RcHm_v2.0_Chr5g0074151 Rosa chinensis HOM05D001129 ORTHO05D003814 7.5e-26 120.2 78 67.9
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 1.3e-25 119.4 81 66.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.3e-25 119.4 81 66.7
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 1.3e-25 119.4 81 66.7
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 1.3e-25 119.4 81 66.7
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.7e-25 119.0 81 65.4
Cpa.g.sc2.304 Carica papaya HOM05D001129 ORTHO05D003814 2.2e-25 118.6 81 66.7
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 2.9e-25 118.2 81 65.4
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 2.9e-25 118.2 81 65.4
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 2.9e-25 118.2 82 67.1
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.9e-25 118.2 81 65.4
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 3.7e-25 117.9 81 65.4
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 3.7e-25 117.9 81 65.4
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 3.7e-25 117.9 81 67.9
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 3.7e-25 117.9 81 64.2
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 4.9e-25 117.5 60 91.7
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 4.9e-25 117.5 81 64.2
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 8.3e-25 116.7 81 65.4
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 8.3e-25 116.7 81 64.2
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 1.1e-24 116.3 81 65.4
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 1.4e-24 115.9 78 66.7
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 1.8e-24 115.5 81 65.4
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 1.8e-24 115.5 81 61.7
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 3.2e-24 114.8 81 64.2
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.2e-24 114.8 81 63.0
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 3.2e-24 114.8 81 64.2
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 4.1e-24 114.4 81 64.2
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 4.1e-24 114.4 81 64.2
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 4.1e-24 114.4 81 59.3
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 5.4e-24 114.0 81 65.4
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 7.0e-24 113.6 86 64.0
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 7.0e-24 113.6 81 64.2
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 9.2e-24 113.2 81 64.2
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 9.2e-24 113.2 81 61.7
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 9.2e-24 113.2 81 60.5
arahy.Tifrunner.gnm1.ann1.P9HJFB Arachis hypogaea HOM05D001129 ORTHO05D003814 1.2e-23 112.8 81 63.0
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 1.2e-23 112.8 81 61.7
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 2.0e-23 112.1 81 63.0
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 2.7e-23 111.7 81 64.2
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.5e-23 111.3 83 60.2
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 4.6e-23 110.9 77 68.8
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 5.9e-23 110.5 81 60.5
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.8e-23 110.2 76 63.2
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.8e-23 110.2 76 63.2
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.8e-23 110.2 76 63.2
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 7.8e-23 110.2 81 60.5
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-22 109.8 77 70.1
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-22 109.8 77 70.1
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.7e-22 109.0 76 63.2
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.3e-22 108.6 83 59.0
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 2.3e-22 108.6 81 61.7
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 3.9e-22 107.8 77 67.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 3.9e-22 107.8 82 59.8
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 5.0e-22 107.5 76 60.5
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 5.0e-22 107.5 82 63.4
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 5.0e-22 107.5 77 61.0
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 6.6e-22 107.1 81 59.3
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 6.6e-22 107.1 75 62.7
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 8.6e-22 106.7 81 56.8
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.1e-21 106.3 81 56.8
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.1e-21 106.3 77 67.5
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.5e-21 105.9 81 58.0
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.9e-21 105.5 81 58.0
Peaxi162Scf00960g00119 Petunia axillaris HOM05D001129 ORTHO05D003814 2.5e-21 105.1 96 54.2
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 7.3e-21 103.6 81 59.3
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 9.5e-21 103.2 78 57.7
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 2.8e-20 101.7 77 64.9
A09p66710 Brassica napus HOM05D001129 ORTHO05D003814 4.7e-20 100.9 82 57.3
RcHm_v2.0_Chr5g0072861 Rosa chinensis HOM05D000162 ORTHO05D000090 2.3e-19 98.6 82 57.3
RcHm_v2.0_Chr5g0072891 Rosa chinensis HOM05D001129 ORTHO05D003814 2.3e-19 98.6 82 57.3
RcHm_v2.0_Chr5g0072791 Rosa chinensis HOM05D001129 ORTHO05D003814 4.0e-19 97.8 82 58.5
BraA09t42010Z Brassica rapa HOM05D001129 ORTHO05D003814 6.8e-19 97.1 69 65.2
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 2.6e-18 95.1 68 67.6
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 3.4e-18 94.7 69 62.3
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 7.5e-18 93.6 79 54.4
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.3e-17 92.8 65 63.1
RcHm_v2.0_Chr5g0072941 Rosa chinensis HOM05D000530 ORTHO05D003814 8.3e-17 90.1 77 61.0
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 2.4e-16 88.6 62 59.7
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 5.4e-16 87.4 108 47.2
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 5.4e-16 87.4 108 47.2
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 5.4e-16 87.4 82 51.2
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.0e-16 87.0 61 68.9
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 9.2e-16 86.7 81 51.9
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.6e-15 85.9 78 52.6
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.6e-15 85.9 82 51.2
SHI11186 Sapria himalayana HOM05D001129 ORTHO05D003814 6.0e-15 84.0 77 49.4
FAN21G2271 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.8e-15 83.6 66 62.1
HPP92_006786 Vanilla planifolia HOM05D001129 ORTHO05D003814 1.7e-14 82.4 82 47.6
Oeu055223.1 Olea europaea HOM05D001129 ORTHO05D003814 2.3e-14 82.0 66 53.0
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 5.8e-10 67.4 77 44.2
TPR.G24864 Trifolium pratense HOM05D001129 ORTHO05D003814 8.3e-09 63.5 66 48.5
AT5G01440 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.1e-08 63.2 47 55.3
AL4G12810 Arabidopsis lyrata HOM05D001129 ORTHO05D031382 1.4e-08 62.8 44 63.6
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 7.1e-08 60.5 86 37.2
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.2e-07 59.7 39 66.7
Ca_23248_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 7.8e-07 57.0 51 47.1
RcHm_v2.0_Chr1g0334011 Rosa chinensis HOM05D001129 ORTHO05D003814 7.8e-07 57.0 39 64.1
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 7.8e-07 57.0 75 40.0
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 1.0e-06 56.6 80 33.8


User provided reference genes

Program Settings