Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39915 Trifolium pratense HOM05D001854 ORTHO05D001800 9.9e-76 286.6 132 100.0
Medtr1g100797 Medicago truncatula HOM05D001854 ORTHO05D001800 1.7e-64 249.2 130 87.7
VMungo0720G1081 Vigna mungo HOM05D001854 ORTHO05D001800 3.6e-62 241.5 130 86.2
Phvul.007G067600 Phaseolus vulgaris HOM05D001854 ORTHO05D001800 6.9e-61 237.3 130 84.6
Ca_10787_v3 Cicer arietinum L. HOM05D001854 ORTHO05D001800 4.5e-60 234.6 130 83.8
Glyma.20G156600 Glycine max HOM05D001854 ORTHO05D001800 5.8e-60 234.2 130 83.1
arahy.Tifrunner.gnm1.ann1.92BBXY Arachis hypogaea HOM05D001854 ORTHO05D001800 9.9e-60 233.4 130 82.3
arahy.Tifrunner.gnm1.ann1.U51PJ3 Arachis hypogaea HOM05D001854 ORTHO05D001800 9.9e-60 233.4 130 82.3
Glyma.10G238000 Glycine max HOM05D001854 ORTHO05D001800 2.9e-59 231.9 130 83.1
Psat6g201160 Pisum sativum HOM05D001854 ORTHO05D001800 4.9e-59 231.1 130 81.5
TPR.G17411 Trifolium pratense HOM05D001854 ORTHO05D001800 1.4e-58 229.6 110 95.5
Lalb_Chr21g0304991 Lupinus albus HOM05D001854 ORTHO05D001800 7.1e-58 227.3 130 78.5
LjContig00238g0023436 Lotus japonicus HOM05D001854 ORTHO05D001800 2.7e-57 225.3 130 81.5
Psat0s3447g0080 Pisum sativum HOM05D001854 ORTHO05D001800 7.4e-55 217.2 132 77.3
arahy.Tifrunner.gnm1.ann1.40NPI1 Arachis hypogaea HOM05D001854 ORTHO05D001800 1.3e-54 216.5 130 76.2
arahy.Tifrunner.gnm1.ann1.4YS3R1 Arachis hypogaea HOM05D001854 ORTHO05D001800 1.3e-54 216.5 130 76.2
Glyma.09G143600 Glycine max HOM05D001854 ORTHO05D001800 1.2e-52 209.9 130 73.8
QL09p014672 Quercus lobata HOM05D001854 ORTHO05D001800 2.6e-52 208.8 129 71.3
Ca_03191_v3 Cicer arietinum L. HOM05D001854 ORTHO05D001800 7.6e-52 207.2 133 74.4
Glyma.16G196400 Glycine max HOM05D001854 ORTHO05D001800 1.3e-51 206.5 130 72.3
Phvul.004G119800 Phaseolus vulgaris HOM05D001854 ORTHO05D001800 2.2e-51 205.7 130 75.4
Medtr0020s0130 Medicago truncatula HOM05D001854 ORTHO05D001800 2.9e-51 205.3 132 73.5
VMungo0464G0558 Vigna mungo HOM05D001854 ORTHO05D001800 3.8e-51 204.9 131 74.0
TPR.G10762 Trifolium pratense HOM05D001854 ORTHO05D001800 1.4e-50 203.0 133 72.9
Thecc.03G172700 Theobroma cacao HOM05D001854 ORTHO05D001800 1.9e-50 202.6 130 73.1
COL.COLO4_14280 Corchorus olitorius HOM05D001854 ORTHO05D001800 3.2e-50 201.8 130 72.3
Cpa.g.sc107.27 Carica papaya HOM05D001854 ORTHO05D001800 7.1e-50 200.7 132 72.0
Haze_13738 Corylus avellana HOM05D001854 ORTHO05D001800 7.1e-50 200.7 130 70.0
Lj2g0018725 Lotus japonicus HOM05D001854 ORTHO05D001800 2.1e-49 199.1 131 74.0
GSVIVG01010599001 Vitis vinifera HOM05D001854 ORTHO05D001800 2.1e-49 199.1 130 69.2
Manes.14G027900 Manihot esculenta HOM05D001854 ORTHO05D001800 4.6e-49 198.0 131 71.0
VMungo0464G0909 Vigna mungo HOM05D001854 ORTHO05D001800 4.6e-49 198.0 131 72.5
CANSAT21G1772 Cannabis sativa HOM05D001854 ORTHO05D001800 7.9e-49 197.2 130 67.7
CiPaw.04G066100 Carya illinoinensis HOM05D001854 ORTHO05D001800 7.9e-49 197.2 131 69.5
CiPaw.03G103900 Carya illinoinensis HOM05D001854 ORTHO05D001800 1.8e-48 196.1 130 70.0
Duzib205G1847 Durio zibethinus HOM05D001854 ORTHO05D001800 8.7e-48 193.7 130 70.8
MD01G1198300 Malus domestica HOM05D001854 ORTHO05D001800 8.7e-48 193.7 130 67.7
Dinv35194 Davidia involucrata HOM05D001854 ORTHO05D001800 1.9e-47 192.6 130 68.5
Ciclev10004762m.g Citrus clementina HOM05D001854 ORTHO05D001800 4.3e-47 191.4 130 68.5
Duzib068G1123 Durio zibethinus HOM05D001854 ORTHO05D001800 7.4e-47 190.7 130 69.2
Sabra15G0151900 Salix brachista HOM05D001854 ORTHO05D001800 9.6e-47 190.3 130 67.7
MD07G1266000 Malus domestica HOM05D001854 ORTHO05D001800 1.3e-46 189.9 130 66.9
Duzib084G0900 Durio zibethinus HOM05D001854 ORTHO05D001800 1.6e-46 189.5 130 68.5
Ah.13g068420 Amaranthus hybridus HOM05D001854 ORTHO05D001800 2.1e-46 189.1 130 64.6
Prupe.2G291800 Prunus persica HOM05D001854 ORTHO05D001800 2.8e-46 188.7 130 66.2
Lj1C994G8 Lonicera japonica HOM05D001854 ORTHO05D001800 4.8e-46 188.0 131 67.9
TWI23G0052 Tripterygium wilfordii HOM05D001854 ORTHO05D001800 4.8e-46 188.0 130 66.9
Potri.015G141400 Populus trichocarpa HOM05D001854 ORTHO05D001800 8.2e-46 187.2 130 66.9
Atru.chr1.488 Acer truncatum HOM05D001854 ORTHO05D001800 1.1e-45 186.8 128 68.8
EL10Ac3g05716 Beta vulgaris HOM05D001854 ORTHO05D001800 1.8e-45 186.0 130 64.6
AUR62021218 Chenopodium quinoa HOM05D001854 ORTHO05D001800 1.8e-45 186.0 130 65.4
Gorai.004G120500 Gossypium raimondii HOM05D001854 ORTHO05D001800 1.8e-45 186.0 130 67.7
TWI39G0696 Tripterygium wilfordii HOM05D001854 ORTHO05D001800 2.4e-45 185.7 130 66.2
Gohir.D08G112100 Gossypium hirsutum HOM05D001854 ORTHO05D001800 5.3e-45 184.5 130 67.7
Manes.06G145600 Manihot esculenta HOM05D001854 ORTHO05D001800 6.9e-45 184.1 131 68.7
Gohir.A12G259800 Gossypium hirsutum HOM05D001854 ORTHO05D001800 1.2e-44 183.3 132 66.7
Gorai.008G279200 Gossypium raimondii HOM05D001854 ORTHO05D001800 1.2e-44 183.3 132 65.9
Gohir.D12G260600 Gossypium hirsutum HOM05D001854 ORTHO05D001800 2.6e-44 182.2 132 65.2
Hma1.2p1_0270F.1_g108280 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 5.8e-44 181.0 130 66.2
ClCG01G005510 Citrullus lanatus HOM05D001854 ORTHO05D001800 7.6e-44 180.6 132 62.1
Potri.012G139100 Populus trichocarpa HOM05D001854 ORTHO05D001800 7.6e-44 180.6 130 65.4
RcHm_v2.0_Chr1g0376931 Rosa chinensis HOM05D001854 ORTHO05D001800 1.0e-43 180.3 130 68.5
Sed0023748 Sechium edule HOM05D001854 ORTHO05D001800 1.0e-43 180.3 132 62.9
MELO3C005379.2 Cucumis melo HOM05D001854 ORTHO05D001800 1.3e-43 179.9 132 62.1
CsaV3_5G005740 Cucumis sativus L. HOM05D001854 ORTHO05D001800 1.3e-43 179.9 132 62.1
FAN03G2097 Fragaria x ananassa HOM05D001854 ORTHO05D001800 1.7e-43 179.5 130 66.9
Gohir.A08G101500 Gossypium hirsutum HOM05D001854 ORTHO05D001800 2.9e-43 178.7 130 66.2
Lalb_Chr01g0009201 Lupinus albus HOM05D001854 ORTHO05D001800 3.8e-43 178.3 129 64.3
Sabra12G0104500 Salix brachista HOM05D001854 ORTHO05D001800 3.8e-43 178.3 130 60.8
Actinidia32876 Actinidia chinensis HOM05D001854 ORTHO05D001800 8.4e-43 177.2 130 61.5
CSS0020162 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 8.4e-43 177.2 136 61.0
FAN01G0692 Fragaria x ananassa HOM05D001854 ORTHO05D001800 1.9e-42 176.0 130 66.2
CSS0048743 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 2.5e-42 175.6 136 62.5
FvH4_7g29140 Fragaria vesca HOM05D001854 ORTHO05D001800 2.5e-42 175.6 130 66.2
FAN06G0398 Fragaria x ananassa HOM05D001854 ORTHO05D001800 2.5e-42 175.6 130 66.2
FAN06G0744 Fragaria x ananassa HOM05D001854 ORTHO05D001800 2.5e-42 175.6 130 66.2
FAN10G0933 Fragaria x ananassa HOM05D001854 ORTHO05D001800 4.2e-42 174.9 130 66.2
CSS0027493 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 5.5e-42 174.5 131 62.6
Cc02_g03250 Coffea canephora HOM05D001854 ORTHO05D001800 7.1e-42 174.1 130 61.5
CAN.G856.8 Capsicum annuum HOM05D001854 ORTHO05D001800 2.1e-41 172.6 130 63.1
PGSC0003DMG400014280 Solanum tuberosum HOM05D001854 ORTHO05D001800 2.1e-41 172.6 130 62.3
SalBow2G1393 Salvia bowleyana HOM05D001854 ORTHO05D001800 2.7e-41 172.2 133 60.2
Nitab4.5_0006040g0020 Nicotiana tabacum HOM05D001854 ORTHO05D001800 3.5e-41 171.8 130 62.3
Nn1g01393 Nelumbo nucifera HOM05D001854 ORTHO05D001800 4.6e-41 171.4 130 58.5
TAR629G2266 Trochodendron aralioides HOM05D001854 ORTHO05D001800 4.6e-41 171.4 130 61.5
PGR142G0980 Punica granatum HOM05D001854 ORTHO05D001800 7.9e-41 170.6 131 62.6
Hund28404 Selenicereus undatus HOM05D001854 ORTHO05D001800 7.9e-41 170.6 131 62.6
Hund28407 Selenicereus undatus HOM05D001854 ORTHO05D001800 7.9e-41 170.6 131 62.6
MSTRG.27128 Avicennia marina HOM05D001854 ORTHO05D001800 1.0e-40 170.2 130 59.2
Solyc03g026060.3 Solanum lycopersicum HOM05D001854 ORTHO05D001800 1.3e-40 169.9 130 61.5
Sopen03g004890 Solanum pennellii HOM05D001854 ORTHO05D001800 1.3e-40 169.9 130 61.5
THA.LOC104818277 Tarenaya hassleriana HOM05D001854 ORTHO05D001800 1.8e-40 169.5 136 61.0
ECA233G4735 Erigeron canadensis HOM05D001854 ORTHO05D001800 3.0e-40 168.7 130 61.5
Nitab4.5_0003870g0020 Nicotiana tabacum HOM05D001854 ORTHO05D001800 3.0e-40 168.7 130 61.5
vmacro06703 Vaccinium macrocarpon HOM05D001854 ORTHO05D001800 5.1e-40 167.9 130 62.3
Aqoxy7G00411 Aquilegia oxysepala HOM05D001854 ORTHO05D001800 8.7e-40 167.2 130 58.5
Eucgr.K00236 Eucalyptus grandis HOM05D001854 ORTHO05D001800 1.1e-39 166.8 130 59.2
DCAR_018184 Daucus carota HOM05D001854 ORTHO05D001800 7.4e-39 164.1 134 60.4
Oeu056233.1 Olea europaea HOM05D001854 ORTHO05D001800 7.4e-39 164.1 130 56.9
Oeu056234.1 Olea europaea HOM05D001854 ORTHO05D001800 7.4e-39 164.1 130 56.9
Rhsim03G0178700 Rhododendron simsii HOM05D001854 ORTHO05D001800 7.4e-39 164.1 130 61.5
DCAR_020238 Daucus carota HOM05D001854 ORTHO05D001800 9.7e-39 163.7 130 58.5
HanXRQChr13g0393721 Helianthus annuus HOM05D001854 ORTHO05D001800 1.8e-37 159.5 133 62.4
MSTRG.97 Avicennia marina HOM05D001854 ORTHO05D001800 2.4e-37 159.1 132 56.1
PSO782G1535 Papaver somniferum HOM05D001854 ORTHO05D001800 1.2e-36 156.8 131 58.0
PSO478G1241 Papaver somniferum HOM05D001854 ORTHO05D001800 1.5e-36 156.4 131 58.0
Peaxi162Scf00915g00121 Petunia axillaris HOM05D001854 ORTHO05D001800 2.0e-36 156.0 130 60.0
Lsat_1_v5_gn_8_7120 Lactuca sativa HOM05D001854 ORTHO05D001800 2.6e-36 155.6 130 59.2
Sed0022960 Sechium edule HOM05D001854 ORTHO05D001800 5.9e-36 154.5 132 56.1
Nn6g34212 Nelumbo nucifera HOM05D001854 ORTHO05D001800 2.9e-35 152.1 130 56.2
MBI12_g15172_MAGBIO Magnolia biondii HOM05D001854 ORTHO05D001800 1.4e-34 149.8 130 54.6
Oeu022577.1 Olea europaea HOM05D001854 ORTHO05D001800 1.4e-34 149.8 127 52.0
MSTRG.8752 Avicennia marina HOM05D001854 ORTHO05D001800 1.9e-34 149.4 128 57.0
Migut.F00360 Erythranthe guttata HOM05D001854 ORTHO05D001800 2.5e-34 149.1 136 55.1
SalBow4G0409 Salvia bowleyana HOM05D001854 ORTHO05D001800 4.2e-34 148.3 130 53.1
Lj8C25G22 Lonicera japonica HOM05D001854 ORTHO05D001800 1.2e-33 146.7 138 57.2
BcaC06g32456 Brassica carinata HOM05D001854 ORTHO05D001800 1.0e-32 143.7 138 58.7
BcaC03g13184 Brassica carinata HOM05D001854 ORTHO05D001800 1.3e-32 143.3 138 55.1
C02p03060 Brassica napus HOM05D001854 ORTHO05D001800 1.3e-32 143.3 138 55.1
BolC2t06266H Brassica oleracea HOM05D001854 ORTHO05D001800 1.3e-32 143.3 138 55.1
AT5G07270 Arabidopsis thaliana HOM05D001854 ORTHO05D001800 3.0e-32 142.1 140 56.4
Thhalv10013287m.g Eutrema salsugineum HOM05D001854 ORTHO05D001800 3.9e-32 141.7 136 55.9
MBI04_g33644_MAGBIO Magnolia biondii HOM05D001854 ORTHO05D001800 1.1e-31 140.2 119 52.9
Sp6g35620 Schrenkiella parvula HOM05D001854 ORTHO05D001800 1.5e-31 139.8 136 54.4
AL6G17510 Arabidopsis lyrata HOM05D001854 ORTHO05D001800 1.9e-31 139.4 140 57.9
C09p69390 Brassica napus HOM05D001854 ORTHO05D001800 3.3e-31 138.7 139 54.7
BolC9t59683H Brassica oleracea HOM05D001854 ORTHO05D001800 3.3e-31 138.7 139 54.7
TAR375G0318 Trochodendron aralioides HOM05D001854 ORTHO05D001800 3.3e-31 138.7 104 60.6
A10p29030 Brassica napus HOM05D001854 ORTHO05D001800 9.7e-31 137.1 140 55.7
BraA10t44951Z Brassica rapa HOM05D001854 ORTHO05D001800 9.7e-31 137.1 140 55.7
BcaB05g21626 Brassica carinata HOM05D001854 ORTHO05D001800 1.7e-30 136.3 138 52.9
CARHR205880 Cardamine hirsuta HOM05D001854 ORTHO05D001800 2.2e-30 136.0 139 51.8
SGA_v2.0_scaffold221G42718 Striga asiatica HOM05D001854 ORTHO05D001800 8.2e-30 134.0 137 52.6
CSS0031976 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 1.1e-29 133.7 132 53.0
ATR0757G093 Amborella trichopoda HOM05D001854 ORTHO05D001800 1.8e-29 132.9 138 51.4
CDE11G0004 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 1.8e-29 132.9 127 50.4
Sc25g0000410 Simmondsia chinensis HOM05D001854 ORTHO05D001800 3.1e-29 132.1 130 51.5
Carub.0006s0623 Capsella rubella HOM05D001854 ORTHO05D001800 4.1e-29 131.7 140 50.0
SGA_v2.0_scaffold2G01069 Striga asiatica HOM05D001854 ORTHO05D001800 3.4e-28 128.6 136 53.7
AUR62016011 Chenopodium quinoa HOM05D001854 ORTHO05D001800 7.2e-26 120.9 99 55.6
Aa31LG3G19110 Aethionema arabicum HOM05D001854 ORTHO05D001800 4.8e-22 108.2 140 45.7
Zm00001eb021320 Zea mays HOM05D001854 ORTHO05D001800 9.1e-21 104.0 129 41.9
SEGI_41599 Sequoiadendron giganteum HOM05D001854 ORTHO05D001800 9.1e-13 77.4 151 32.5
unitig_37.g12519 Utricularia gibba HOM05D001854 ORTHO05D001800 4.0e-08 62.0 59 50.8


User provided reference genes

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