Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 9.4e-49 196.4 92 100.0
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.9e-41 172.2 103 81.6
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.9e-39 164.5 105 78.1
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.0e-35 152.1 105 73.3
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 8.0e-32 140.2 91 76.9
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 3.7e-29 131.3 105 64.8
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.7e-27 125.2 102 64.7
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 6.1e-24 114.0 105 59.0
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 8.8e-23 110.2 105 54.3
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 8.8e-23 110.2 105 54.3
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 8.8e-23 110.2 108 54.6
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.2e-22 109.8 109 53.2
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.5e-22 109.4 109 55.0
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 7.5e-22 107.1 108 53.7
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 7.5e-22 107.1 109 52.3
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 9.8e-22 106.7 108 52.8
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 4.8e-21 104.4 108 52.8
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.8e-21 104.4 109 50.5
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.4e-20 102.1 109 52.3
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 4.1e-20 101.3 107 52.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 5.4e-20 100.9 109 52.3
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 7.0e-20 100.5 111 51.4
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.2e-19 99.8 109 50.5
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.2e-19 99.8 109 50.5
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.6e-19 99.4 109 49.5
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 3.5e-19 98.2 109 49.5
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 4.5e-19 97.8 111 52.3
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 5.9e-19 97.4 109 50.5
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 5.9e-19 97.4 109 49.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.9e-19 97.4 83 59.0
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 7.7e-19 97.1 107 50.5
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.0e-18 96.7 109 49.5
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.7e-18 95.9 105 50.5
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.2e-18 95.5 83 56.6
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.2e-18 95.5 83 57.8
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 2.2e-18 95.5 109 48.6
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 2.2e-18 95.5 111 50.5
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.9e-18 95.1 102 51.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.9e-18 95.1 102 51.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.9e-18 95.1 102 51.0
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.9e-18 95.1 109 50.5
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 3.8e-18 94.7 103 52.4
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 5.0e-18 94.4 51 90.2
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 6.5e-18 94.0 106 47.2
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.5e-18 94.0 102 51.0
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 6.5e-18 94.0 84 58.3
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.1e-17 93.2 109 48.6
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.5e-17 92.8 83 57.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.5e-17 92.8 83 56.6
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.9e-17 92.4 92 51.1
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.9e-17 92.4 83 53.0
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.5e-17 92.0 83 56.6
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.5e-17 92.0 109 49.5
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 2.5e-17 92.0 109 47.7
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 4.2e-17 91.3 109 46.8
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 4.2e-17 91.3 103 48.5
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.5e-17 90.9 83 54.2
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.5e-17 90.9 83 54.2
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 7.2e-17 90.5 109 47.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 7.2e-17 90.5 83 53.0
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 9.5e-17 90.1 105 48.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.1e-16 89.0 109 45.9
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.1e-16 89.0 83 54.2
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.8e-16 88.6 83 53.0
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.8e-16 88.6 83 51.8
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.6e-16 88.2 113 46.9
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 4.7e-16 87.8 101 48.5
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.7e-16 87.8 105 47.6
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 4.7e-16 87.8 83 54.2
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 6.1e-16 87.4 83 50.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 6.1e-16 87.4 109 47.7
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.0e-15 86.7 83 53.0
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.8e-15 85.9 97 49.5
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.3e-15 85.5 83 50.6
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 3.0e-15 85.1 83 55.4
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.0e-15 85.1 96 47.9
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 5.2e-15 84.3 83 54.2
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.8e-15 84.0 108 50.0
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 8.8e-15 83.6 105 45.7
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 8.8e-15 83.6 83 49.4
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 8.8e-15 83.6 83 49.4
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.2e-14 83.2 74 58.1
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.0e-14 82.4 74 58.1
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.6e-14 82.0 141 39.0
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 3.4e-14 81.6 69 59.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 3.4e-14 81.6 94 48.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 4.4e-14 81.3 85 52.9
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.4e-14 81.3 69 59.4
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 4.4e-14 81.3 83 51.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 7.5e-14 80.5 86 48.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 7.5e-14 80.5 69 58.0
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 7.5e-14 80.5 69 58.0
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.7e-13 79.3 69 56.5
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.7e-13 79.3 69 56.5
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.7e-13 78.2 83 50.6
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 4.9e-13 77.8 65 60.0
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 4.9e-13 77.8 89 47.2
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 6.3e-13 77.4 84 50.0
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 6.3e-13 77.4 84 50.0
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.4e-12 76.3 83 48.2
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.4e-12 75.5 82 51.2
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.1e-12 74.7 74 52.7
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.4e-12 74.3 98 40.8
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.4e-12 74.3 98 40.8
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 9.2e-12 73.6 105 43.8
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.2e-11 73.2 85 49.4
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.5e-11 71.2 68 57.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 5.9e-11 70.9 85 45.9
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.0e-10 70.1 78 46.2
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.3e-10 69.7 64 56.2
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.2e-08 63.2 82 43.9
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.8e-08 62.0 87 43.7
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.1e-08 60.8 78 43.6
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 6.1e-08 60.8 77 49.4
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 8.0e-08 60.5 103 35.0
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.4e-07 59.7 54 57.4
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 7.5e-06 53.9 75 45.3


User provided reference genes

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