Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 4.2e-36 154.1 73 100.0
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 1.8e-26 122.1 78 82.1
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 8.8e-26 119.8 78 79.5
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.2e-25 119.4 78 80.8
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.2e-25 119.4 78 80.8
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 2.0e-25 118.6 78 79.5
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 2.2e-24 115.2 78 75.6
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 1.4e-23 112.5 78 74.4
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 2.4e-23 111.7 78 74.4
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 4.1e-23 110.9 78 74.4
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 4.1e-23 110.9 73 79.5
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 4.1e-23 110.9 78 73.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 2.7e-22 108.2 78 74.4
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 1.3e-21 105.9 73 68.5
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 5.5e-20 100.5 78 69.2
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 9.5e-20 99.8 67 70.1
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 1.6e-19 99.0 68 67.6
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.6e-19 99.0 68 67.6
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.6e-19 99.0 68 70.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 3.6e-19 97.8 68 70.6
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 3.6e-19 97.8 78 67.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 3.6e-19 97.8 66 72.7
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 3.6e-19 97.8 78 64.1
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 8.0e-19 96.7 68 67.6
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 8.0e-19 96.7 68 67.6
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 8.0e-19 96.7 72 62.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 8.0e-19 96.7 66 72.7
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 1.0e-18 96.3 68 69.1
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 1.0e-18 96.3 76 65.8
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 1.0e-18 96.3 66 72.7
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.4e-18 95.9 75 62.7
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.3e-18 95.1 68 66.2
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 2.3e-18 95.1 75 62.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 3.0e-18 94.7 65 72.3
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 5.2e-18 94.0 67 67.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 6.8e-18 93.6 77 58.4
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 8.9e-18 93.2 68 64.7
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 8.9e-18 93.2 68 67.6
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 1.2e-17 92.8 78 60.3
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 1.5e-17 92.4 77 58.4
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 1.5e-17 92.4 75 61.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 2.0e-17 92.0 75 61.3
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 3.4e-17 91.3 77 57.1
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.4e-17 90.9 75 60.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 4.4e-17 90.9 75 60.0
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 5.7e-17 90.5 77 58.4
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.7e-16 89.0 69 63.8
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 2.2e-16 88.6 69 62.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 4.9e-16 87.4 73 58.9
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.9e-16 87.4 69 62.3
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 8.3e-16 86.7 75 57.3
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 8.3e-16 86.7 73 64.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.8e-15 85.5 68 61.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 1.8e-15 85.5 68 61.8
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 1.8e-15 85.5 68 60.3
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 5.4e-15 84.0 63 63.5
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 1.2e-14 82.8 64 65.6
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 1.6e-14 82.4 78 57.7
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 1.0e-13 79.7 78 51.3
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 3.9e-13 77.8 65 64.6
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.0e-13 77.4 78 57.7
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 6.6e-13 77.0 66 62.1
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 8.6e-13 76.6 68 57.4
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 1.1e-12 76.3 78 55.1
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 1.5e-12 75.9 70 58.6
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 1.5e-12 75.9 70 58.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 2.5e-12 75.1 74 56.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 7.3e-12 73.6 78 53.8
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 7.3e-12 73.6 76 51.3
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 7.3e-12 73.6 75 52.0
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 9.5e-12 73.2 59 61.0
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 1.2e-11 72.8 51 68.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 2.1e-11 72.0 68 52.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 4.7e-11 70.9 68 54.4
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 1.4e-10 69.3 68 52.9
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 2.3e-10 68.6 73 52.1
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 3.1e-10 68.2 73 50.7
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 4.0e-10 67.8 68 50.0
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 8.9e-10 66.6 68 52.9
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 2.6e-09 65.1 66 51.5
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 6.4e-08 60.5 73 46.6
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 9.2e-07 56.6 46 56.5
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 9.2e-07 56.6 68 45.6
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 1.6e-06 55.8 72 48.6
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 2.0e-06 55.5 73 46.6
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.6e-06 54.3 49 59.2


User provided reference genes

Program Settings