Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.9e-47 191.0 92 100.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 4.5e-19 97.8 50 94.0
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.3e-18 96.3 50 92.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.3e-18 96.3 50 92.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.3e-18 96.3 50 92.0
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.9e-18 95.1 50 90.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 3.8e-18 94.7 50 90.0
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 3.8e-18 94.7 50 90.0
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 3.8e-18 94.7 50 90.0
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 5.0e-18 94.4 50 90.0
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 5.0e-18 94.4 50 90.0
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 5.0e-18 94.4 50 90.0
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 5.0e-18 94.4 50 90.0
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 8.5e-18 93.6 50 90.0
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.1e-17 93.2 50 88.0
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.1e-17 93.2 50 90.0
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.1e-17 93.2 50 88.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.1e-17 93.2 50 90.0
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.5e-17 92.8 50 90.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.5e-17 92.8 50 90.0
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.5e-17 92.8 50 88.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.5e-17 92.8 50 88.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.9e-17 92.4 50 86.0
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.9e-17 92.4 50 86.0
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.9e-17 92.4 50 88.0
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.5e-17 92.0 50 88.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.5e-17 92.0 50 86.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.5e-17 92.0 50 86.0
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-17 92.0 50 86.0
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-17 92.0 50 86.0
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 2.5e-17 92.0 50 86.0
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 3.2e-17 91.7 50 86.0
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.2e-17 91.7 50 86.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 3.2e-17 91.7 50 86.0
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 4.2e-17 91.3 50 86.0
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 4.2e-17 91.3 50 86.0
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 5.5e-17 90.9 50 86.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 7.2e-17 90.5 50 84.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 9.5e-17 90.1 50 82.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 9.5e-17 90.1 50 84.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.5e-17 90.1 50 84.0
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 9.5e-17 90.1 47 91.5
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.2e-16 89.7 50 80.0
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.1e-16 89.0 50 84.0
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.1e-16 89.0 50 84.0
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.1e-16 89.0 50 84.0
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.1e-16 89.0 50 84.0
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.1e-16 89.0 50 84.0
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.1e-16 89.0 50 84.0
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 84.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 84.0
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 80.0
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 80.0
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 80.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 80.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 82.0
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 82.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.8e-16 88.6 50 84.0
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 3.6e-16 88.2 50 80.0
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.6e-16 88.2 50 82.0
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 3.6e-16 88.2 50 82.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 4.7e-16 87.8 50 82.0
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 4.7e-16 87.8 50 82.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.7e-16 87.8 50 80.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.7e-16 87.8 50 84.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 6.1e-16 87.4 50 78.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 6.1e-16 87.4 50 78.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.1e-16 87.4 49 81.6
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 6.1e-16 87.4 50 78.0
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 6.1e-16 87.4 50 82.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 6.1e-16 87.4 50 82.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.0e-15 86.7 50 78.0
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.0e-15 86.7 49 83.7
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.4e-15 86.3 50 82.0
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.8e-15 85.9 50 80.0
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.8e-15 85.9 50 82.0
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.3e-15 85.5 50 78.0
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.0e-15 85.1 50 78.0
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.0e-15 85.1 50 82.0
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.0e-15 85.1 50 80.0
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 5.2e-15 84.3 50 78.0
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 5.2e-15 84.3 50 78.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 5.2e-15 84.3 50 80.0
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 6.8e-15 84.0 50 74.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 6.8e-15 84.0 50 76.0
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 6.8e-15 84.0 50 78.0
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 6.8e-15 84.0 50 78.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 6.8e-15 84.0 50 78.0
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 8.8e-15 83.6 50 78.0
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 8.8e-15 83.6 50 78.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.2e-14 83.2 50 76.0
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.2e-14 83.2 50 74.0
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.5e-14 82.8 50 78.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.6e-14 82.0 50 80.0
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.6e-14 82.0 50 72.0
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.4e-14 81.3 50 80.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.3e-10 69.7 52 65.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 5.0e-10 67.8 51 64.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.5e-09 66.2 60 55.0
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 9.5e-09 63.5 52 63.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 2.1e-08 62.4 50 64.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 4.7e-08 61.2 52 59.6
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 6.1e-08 60.8 106 37.7
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.0e-07 60.1 51 58.8
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.0e-07 58.5 35 80.0
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 5.2e-07 57.8 34 73.5
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.2e-06 56.6 27 100.0
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 9.8e-06 53.5 29 82.8


User provided reference genes

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