Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.0e-215 753.1 370 100.0
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 6.3e-205 717.2 370 95.1
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.3e-202 708.8 370 93.2
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 7.0e-196 687.2 370 89.5
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 6.0e-195 684.1 370 89.2
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 1.1e-193 679.9 351 94.3
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 9.5e-193 676.8 370 88.1
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.2e-191 671.0 370 87.8
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 2.6e-190 668.7 370 85.7
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 5.8e-190 667.5 366 89.6
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.9e-189 665.2 370 86.8
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 9.2e-188 660.2 370 85.9
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 2.3e-186 655.6 366 87.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 3.9e-186 654.8 371 86.3
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.3e-185 651.4 370 85.7
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 5.6e-185 651.0 366 88.0
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 7.3e-185 650.6 366 86.3
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 9.5e-185 650.2 370 84.3
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 9.5e-185 650.2 359 86.9
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.2e-184 649.8 370 84.3
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.7e-184 647.9 370 85.4
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.4e-183 646.4 370 83.8
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 2.3e-183 645.6 370 84.6
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 6.8e-183 644.0 370 84.6
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 5.8e-182 641.0 409 77.8
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.3e-181 639.8 370 83.0
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 2.9e-181 638.6 370 84.1
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.9e-181 638.6 370 84.1
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 2.4e-180 635.6 370 83.2
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 3.2e-180 635.2 368 84.5
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.2e-180 635.2 370 82.2
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 3.2e-180 635.2 370 82.2
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 3.2e-180 635.2 370 83.5
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 4.1e-180 634.8 377 82.5
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 5.4e-180 634.4 370 83.2
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 5.4e-180 634.4 370 82.2
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 7.1e-180 634.0 371 83.3
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 9.2e-180 633.6 370 83.5
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 9.2e-180 633.6 370 82.4
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.2e-179 633.3 370 83.5
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 3.0e-178 628.6 371 83.0
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 5.1e-178 627.9 370 83.0
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 8.6e-178 627.1 371 82.7
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.5e-177 626.3 370 82.4
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 2.5e-177 625.5 386 80.3
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 3.3e-177 625.2 370 82.2
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 5.6e-177 624.4 370 81.6
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 7.3e-177 624.0 371 82.2
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.3e-177 624.0 371 80.9
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.3e-177 624.0 371 80.9
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 4.7e-176 621.3 371 81.1
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.1e-175 620.2 371 80.9
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.1e-175 620.2 371 81.7
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.4e-175 619.0 370 81.6
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 5.2e-175 617.8 371 81.4
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.0e-174 615.9 371 80.1
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.6e-174 615.5 370 80.8
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 7.6e-174 614.0 370 80.3
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 7.6e-174 614.0 371 80.1
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 9.9e-174 613.6 370 81.1
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.9e-174 613.6 369 81.0
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.3e-173 613.2 371 79.2
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 1.3e-173 613.2 372 81.2
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.8e-173 611.7 371 79.5
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.8e-173 611.7 370 80.3
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 3.8e-173 611.7 370 81.1
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 6.4e-173 610.9 370 80.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 8.4e-173 610.5 373 80.2
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.1e-172 610.1 371 80.3
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.4e-172 609.8 370 80.8
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.9e-172 609.4 371 80.6
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.4e-172 609.0 371 80.3
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.4e-172 609.0 373 80.2
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 3.2e-172 608.6 371 80.3
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 3.2e-172 608.6 361 81.7
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 4.2e-172 608.2 371 80.3
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.2e-172 608.2 373 79.9
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 7.1e-172 607.4 371 80.3
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 9.2e-172 607.1 371 79.8
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 2.1e-171 605.9 370 79.2
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.1e-171 605.9 370 79.7
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 3.5e-171 605.1 371 80.3
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.0e-170 603.6 372 80.6
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 8.7e-170 600.5 373 79.6
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.9e-169 599.4 370 78.9
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.5e-169 599.0 384 77.9
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 3.3e-169 598.6 369 78.3
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 7.3e-169 597.4 360 81.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 7.3e-169 597.4 397 75.3
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 9.6e-169 597.0 370 79.5
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.3e-168 596.7 356 79.8
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 1.6e-168 596.3 373 79.1
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.1e-167 593.6 373 79.4
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 5.3e-167 591.3 369 78.9
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.2e-166 590.1 402 74.1
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.5e-166 589.7 362 78.7
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.0e-166 589.3 372 79.3
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 2.6e-166 589.0 362 78.7
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 2.6e-166 589.0 362 78.7
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 2.6e-166 589.0 362 78.7
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 2.6e-166 589.0 362 78.7
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 2.6e-166 589.0 362 78.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.4e-166 588.6 374 77.3
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.7e-165 586.3 370 76.2
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 4.9e-165 584.7 369 77.8
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.4e-164 583.2 369 78.6
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.4e-164 582.4 351 80.6
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 3.5e-163 578.6 370 74.6
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 4.6e-163 578.2 350 79.4
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 4.6e-163 578.2 370 77.3
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 2.3e-162 575.9 362 79.6
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 3.9e-162 575.1 370 76.2
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 3.9e-162 575.1 368 74.7
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-161 573.5 368 74.7
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 4.3e-161 571.6 369 77.0
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 9.6e-161 570.5 370 76.2
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.8e-160 568.9 371 76.5
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 1.1e-159 567.0 360 77.2
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.4e-159 565.8 370 74.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 9.0e-159 563.9 368 75.8
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 9.0e-159 563.9 368 76.9
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 1.5e-158 563.1 433 67.4
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 4.5e-158 561.6 367 73.6
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.3e-157 560.1 370 76.8
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 1.7e-157 559.7 360 77.5
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.2e-157 559.3 351 78.9
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.8e-157 558.5 366 74.9
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.1e-156 557.0 360 75.3
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.3e-154 550.1 366 72.7
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 2.3e-154 549.3 366 72.4
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 7.4e-153 544.3 351 77.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.1e-151 540.4 362 72.9
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.0e-151 538.5 371 72.2
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 9.0e-151 537.3 371 72.2
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.6e-147 526.6 361 68.7
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.7e-147 525.8 371 70.9
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.9e-147 524.2 370 67.3
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 1.8e-146 523.1 373 71.6
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.1e-145 520.4 372 70.7
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 6.2e-144 514.6 371 67.4
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 5.3e-143 511.5 370 66.2
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 5.8e-142 508.1 369 66.9
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.2e-141 506.1 372 65.3
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 2.9e-141 505.8 397 67.5
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.1e-135 487.3 368 65.8
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.2e-134 483.8 372 64.2
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 1.4e-130 470.3 288 78.8
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 5.1e-130 468.4 346 70.2
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.3e-129 465.7 283 78.1
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.7e-128 462.2 370 60.5
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.7e-125 453.4 325 69.2
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.2e-125 453.0 358 63.1
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.9e-124 449.9 277 79.1
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 7.2e-124 448.0 280 77.5
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.6e-123 446.8 281 79.0
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 3.9e-122 442.2 327 68.5
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 2.0e-121 439.9 278 77.3
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 4.4e-121 438.7 279 76.0
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.4e-119 433.7 388 56.2
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 5.0e-117 425.2 275 77.5
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.4e-113 411.4 366 53.8
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.7e-112 410.2 285 69.1
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 2.2e-109 399.8 275 69.8
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.5e-108 397.1 240 80.0
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 2.5e-108 396.4 400 50.8
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.1e-103 379.4 370 51.1
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 9.8e-89 331.3 200 80.5
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.0e-86 323.6 273 62.3
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.5e-86 322.8 198 80.8
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 2.8e-83 313.2 177 83.6
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-78 297.7 197 72.1
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.4e-66 257.7 171 75.4
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 3.2e-55 219.9 268 50.0
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.2e-48 197.2 364 32.7
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.6e-43 181.0 113 78.8
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.1e-42 176.8 452 28.3
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.9e-39 167.5 119 64.7
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.6e-38 164.5 147 57.8
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 2.7e-38 163.7 122 62.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 2.3e-37 160.6 388 26.3
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.3e-35 154.8 316 30.4
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 2.3e-29 134.0 115 58.3
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 2.5e-28 130.6 84 75.0
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 4.1e-10 70.1 49 73.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 2.5e-07 60.8 68 51.5


User provided reference genes

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