Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 2.5e-67 258.8 151 100.0
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 7.9e-61 237.3 149 92.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.3e-60 235.7 151 90.7
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 9.9e-56 220.3 151 85.4
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.9e-55 218.8 128 88.3
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.1e-54 216.9 131 86.3
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.4e-54 215.7 158 82.9
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 2.1e-53 212.6 128 85.2
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 6.0e-53 211.1 130 85.4
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 6.0e-53 211.1 129 85.3
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.9e-52 208.4 128 84.4
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.3e-50 203.4 151 80.8
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.1e-50 202.6 122 86.1
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.5e-48 196.4 156 78.2
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.6e-48 195.7 130 80.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.7e-47 193.0 129 80.6
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.7e-47 193.0 129 80.6
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.2e-47 192.6 128 80.5
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.2e-47 192.6 127 80.3
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.2e-47 192.6 127 80.3
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.8e-47 191.8 131 76.3
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 8.4e-47 190.7 125 79.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.1e-46 190.3 126 80.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-46 190.3 121 82.6
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.5e-46 189.1 121 82.6
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.5e-46 189.1 130 76.9
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.2e-46 188.7 121 81.8
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 3.2e-46 188.7 125 80.0
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 4.2e-46 188.3 130 78.5
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 4.2e-46 188.3 130 78.5
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 5.5e-46 188.0 131 74.8
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 7.1e-46 187.6 146 74.7
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 9.3e-46 187.2 122 80.3
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.2e-45 186.8 119 81.5
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.2e-45 186.8 121 80.2
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.2e-45 186.8 144 79.2
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.1e-45 186.0 146 74.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 2.1e-45 186.0 144 81.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.7e-45 185.7 150 76.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.7e-45 185.7 130 73.8
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 3.5e-45 185.3 127 77.2
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.5e-45 185.3 144 78.5
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.6e-45 184.9 121 80.2
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 4.6e-45 184.9 148 77.7
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 4.6e-45 184.9 131 76.3
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 6.0e-45 184.5 152 75.0
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 6.0e-45 184.5 146 74.7
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 6.0e-45 184.5 144 79.9
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.9e-45 184.1 158 74.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.0e-44 183.7 123 77.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.8e-44 183.0 149 76.5
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 3.0e-44 182.2 128 76.6
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 3.0e-44 182.2 124 77.4
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 6.7e-44 181.0 120 79.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 8.7e-44 180.6 161 66.5
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 8.7e-44 180.6 130 73.1
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 8.7e-44 180.6 127 74.8
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.5e-43 179.9 123 75.6
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.9e-43 179.5 126 74.6
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 3.3e-43 178.7 154 71.4
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 3.3e-43 178.7 150 71.3
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.3e-43 178.7 124 75.0
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 3.3e-43 178.7 123 75.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 3.3e-43 178.7 123 75.6
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 4.3e-43 178.3 123 75.6
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 7.4e-43 177.6 121 76.0
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 9.6e-43 177.2 121 76.0
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.3e-42 176.8 123 74.8
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.6e-42 176.4 124 73.4
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.6e-42 176.4 123 77.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.7e-42 175.3 150 69.3
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 4.8e-42 174.9 121 76.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 6.3e-42 174.5 128 71.9
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 6.3e-42 174.5 128 71.9
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.4e-41 173.3 131 70.2
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.8e-41 172.9 150 68.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.4e-41 172.6 128 70.3
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.4e-41 172.6 128 70.3
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.4e-41 172.6 128 70.3
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.4e-41 172.6 119 74.8
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 3.1e-41 172.2 128 70.3
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 3.1e-41 172.2 150 66.7
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 5.3e-41 171.4 128 69.5
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.3e-41 171.4 123 72.4
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 5.3e-41 171.4 123 74.8
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 6.9e-41 171.0 128 69.5
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 9.0e-41 170.6 128 69.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 9.0e-41 170.6 126 70.6
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.2e-40 170.2 128 68.0
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.5e-40 169.9 124 70.2
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.5e-40 169.9 124 70.2
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 2.0e-40 169.5 130 69.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.0e-40 169.5 128 68.8
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.0e-40 169.5 121 72.7
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.0e-40 169.5 121 72.7
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 4.5e-40 168.3 122 71.3
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.5e-40 168.3 121 72.7
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.5e-40 168.3 121 72.7
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 7.6e-40 167.5 123 70.7
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 7.6e-40 167.5 125 67.2
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-39 166.8 123 74.0
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.9e-39 165.6 120 72.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 6.5e-39 164.5 116 74.1
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.1e-38 163.7 119 66.4
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 3.2e-38 162.2 132 66.7
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.1e-37 159.5 123 68.3
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-36 156.8 123 70.7
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 3.0e-36 155.6 193 50.8
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 3.9e-36 155.2 143 60.1
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.7e-36 154.1 96 81.2
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.1e-35 153.7 129 69.0
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 5.7e-35 151.4 124 62.1
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 7.4e-35 151.0 124 63.7
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 7.4e-35 151.0 144 62.5
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 9.7e-35 150.6 206 47.1
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.3e-34 150.2 129 63.6
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.6e-34 149.8 137 65.0
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-33 147.1 96 81.2
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.2e-32 143.7 102 73.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.5e-32 143.3 105 72.4
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 5.9e-32 141.4 99 76.8
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 7.7e-32 141.0 123 60.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.5e-31 137.9 125 55.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.0e-28 129.0 124 53.2
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 3.9e-28 128.6 90 76.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.1e-28 128.3 125 51.2
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 8.8e-28 127.5 83 79.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.5e-27 126.7 124 51.6
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 6.3e-26 121.3 122 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.0e-23 114.0 123 46.3
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.5e-22 109.4 81 69.1
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 4.2e-22 108.6 94 58.5
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 4.2e-22 108.6 94 58.5
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.9e-20 102.1 105 56.2
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.9e-16 88.2 95 56.8
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-14 83.6 64 68.8
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 3.6e-13 79.0 52 69.2
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 7.0e-09 64.7 59 62.7
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-08 63.9 72 54.2
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-08 63.9 72 54.2


User provided reference genes

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