Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39113 Trifolium pratense HOM05D003769 ORTHO05D004521 5.5e-37 157.1 80 100.0
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 1.8e-27 125.6 67 94.0
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 1.7e-25 119.0 67 88.1
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 8.2e-25 116.7 67 88.1
Psat7g012720 Pisum sativum HOM05D003769 ORTHO05D004521 2.4e-24 115.2 67 86.6
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 6.9e-24 113.6 67 85.1
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 6.9e-24 113.6 67 85.1
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 9.1e-24 113.2 67 83.6
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 4.2e-21 104.4 67 74.6
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 1.6e-20 102.4 66 74.2
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 2.1e-20 102.1 68 70.6
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 4.7e-20 100.9 67 70.1
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 6.1e-20 100.5 67 74.6
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 7.9e-20 100.1 67 74.6
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 7.9e-20 100.1 68 75.0
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 1.4e-19 99.4 67 70.1
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 2.3e-19 98.6 67 70.1
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 3.0e-19 98.2 67 70.1
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 3.0e-19 98.2 67 70.1
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 3.0e-19 98.2 67 70.1
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 3.9e-19 97.8 67 70.1
COL.COLO4_16279 Corchorus olitorius HOM05D003769 ORTHO05D004521 6.7e-19 97.1 66 68.2
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 6.7e-19 97.1 67 70.1
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 6.7e-19 97.1 67 67.2
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 8.8e-19 96.7 67 70.1
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 8.8e-19 96.7 67 70.1
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.1e-18 96.3 67 70.1
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 1.5e-18 95.9 66 69.7
VMungo0720G0265 Vigna mungo HOM05D003769 ORTHO05D004521 2.0e-18 95.5 68 72.1
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 2.6e-18 95.1 66 66.7
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 4.4e-18 94.4 67 70.1
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 4.4e-18 94.4 67 70.1
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 4.4e-18 94.4 67 70.1
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 4.4e-18 94.4 66 69.7
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 5.7e-18 94.0 67 67.2
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 7.4e-18 93.6 79 55.7
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 1.7e-17 92.4 66 71.2
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 1.7e-17 92.4 67 68.7
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 2.2e-17 92.0 66 68.2
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 2.2e-17 92.0 65 66.2
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 2.8e-17 91.7 67 65.7
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 2.8e-17 91.7 67 65.7
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 2.8e-17 91.7 66 66.7
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 2.8e-17 91.7 67 68.7
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 4.8e-17 90.9 63 66.7
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 4.8e-17 90.9 67 68.7
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 8.2e-17 90.1 67 62.7
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 2.4e-16 88.6 67 61.2
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 2.4e-16 88.6 67 68.7
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 5.3e-16 87.4 67 64.2
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 7.0e-16 87.0 65 63.1
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 7.0e-16 87.0 66 66.7
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 9.1e-16 86.7 65 61.5
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 1.2e-15 86.3 65 64.6
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.6e-15 85.9 67 65.7
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 2.0e-15 85.5 67 65.7
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 7.7e-15 83.6 67 61.2
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 7.7e-15 83.6 67 61.2
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 1.0e-14 83.2 66 62.1
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 1.7e-14 82.4 64 64.1
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 1.7e-14 82.4 65 61.5
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 2.9e-14 81.6 67 59.7
Haze_18652 Corylus avellana HOM05D003769 ORTHO05D004521 5.0e-14 80.9 67 61.2
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 8.5e-14 80.1 60 66.7
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 8.5e-14 80.1 67 62.7
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 1.1e-13 79.7 58 67.2
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 9.4e-13 76.6 67 55.2
vmacro04397 Vaccinium macrocarpon HOM05D003769 ORTHO05D004521 9.4e-13 76.6 58 65.5
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 1.6e-12 75.9 67 55.2
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 2.1e-12 75.5 71 52.1
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 2.7e-12 75.1 58 67.2
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 2.7e-12 75.1 67 53.7
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 2.7e-12 75.1 67 53.7
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 2.7e-12 75.1 67 53.7
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 2.7e-12 75.1 67 53.7
COL.COLO4_00775 Corchorus olitorius HOM05D003769 ORTHO05D004521 2.7e-12 75.1 66 59.1
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 6.1e-12 73.9 67 52.2
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 8.0e-12 73.6 66 56.1
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 1.0e-11 73.2 74 51.4
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 1.0e-11 73.2 56 62.5
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.0e-11 73.2 56 62.5
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.0e-11 73.2 56 62.5
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.0e-11 73.2 56 62.5
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 1.4e-11 72.8 75 52.0
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 1.8e-11 72.4 60 56.7
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 2.3e-11 72.0 67 50.7
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.3e-11 72.0 65 55.4
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 2.3e-11 72.0 56 64.3
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 2.3e-11 72.0 56 62.5
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 3.0e-11 71.6 58 62.1
BolC7t43935H Brassica oleracea HOM05D003769 ORTHO05D004521 4.0e-11 71.2 67 52.2
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 4.0e-11 71.2 65 53.8
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 2.0e-10 68.9 67 52.2
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 2.0e-10 68.9 67 47.8
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 3.3e-10 68.2 56 58.9
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 3.7e-09 64.7 67 50.7
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 8.2e-09 63.5 56 57.1
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 1.8e-08 62.4 58 51.7
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 1.8e-08 62.4 64 48.4
unitig_8.g3058 Utricularia gibba HOM05D003769 ORTHO05D004521 9.1e-08 60.1 62 50.0
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 2.0e-07 58.9 44 65.9
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 2.7e-07 58.5 62 51.6
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 4.5e-07 57.8 64 48.4
FvH4_5g12360 Fragaria vesca HOM05D003769 ORTHO05D004521 5.9e-07 57.4 43 60.5
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 6.5e-06 53.9 58 48.3


User provided reference genes

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