Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 1.3e-175 620.5 598 100.0
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.3e-119 433.7 598 85.3
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.7e-114 417.5 598 78.3
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.2e-112 411.4 604 82.3
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 4.6e-112 409.5 598 74.1
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.5e-110 404.4 598 81.1
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.1e-108 398.3 599 74.8
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 4.6e-104 382.9 596 78.4
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 4.0e-100 369.8 608 72.2
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 8.9e-100 368.6 596 67.8
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 2.4e-97 360.5 598 68.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.2e-96 358.2 574 80.1
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 3.0e-95 353.6 596 64.1
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 4.8e-93 346.3 598 76.9
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.4e-92 344.7 598 70.1
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 6.4e-90 335.9 598 61.9
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 7.1e-89 332.4 596 71.3
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 7.1e-89 332.4 598 75.3
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 7.1e-89 332.4 598 66.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 9.3e-89 332.0 594 65.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 7.9e-88 328.9 598 67.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.0e-87 328.6 596 67.4
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.3e-87 327.4 596 63.1
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.0e-87 327.0 598 63.7
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 5.1e-87 326.2 596 66.1
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.3e-85 321.6 596 65.9
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.6e-85 321.2 598 72.7
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.1e-84 318.5 611 67.6
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.8e-84 317.8 597 72.7
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.3e-84 316.2 598 64.9
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 6.9e-84 315.8 598 71.7
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 9.0e-84 315.5 597 73.5
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.8e-83 312.8 597 73.4
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.8e-83 312.8 595 59.8
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 2.9e-82 310.5 598 68.9
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.4e-81 308.1 598 63.2
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 3.2e-81 307.0 600 59.7
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.2e-81 306.6 598 63.2
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 2.7e-80 303.9 596 71.8
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.7e-80 303.9 598 62.9
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.5e-78 298.1 600 60.0
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 2.5e-78 297.4 596 58.7
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.5e-78 297.4 598 62.7
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 3.3e-78 297.0 598 65.6
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 5.6e-78 296.2 598 65.7
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 5.6e-78 296.2 596 60.9
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 9.6e-78 295.4 594 63.5
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 2.8e-77 293.9 598 65.7
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.2e-77 292.7 601 61.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 5.3e-76 289.7 600 67.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 9.0e-76 288.9 643 65.2
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 3.4e-75 287.0 577 69.5
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 4.5e-75 286.6 596 69.3
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 7.6e-75 285.8 598 62.9
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.4e-73 281.6 598 62.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 4.2e-73 280.0 597 72.4
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 4.2e-73 280.0 431 67.5
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 2.3e-71 274.2 517 64.6
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 3.0e-71 273.9 596 70.8
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.5e-70 270.8 598 58.5
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 7.4e-70 269.2 598 57.9
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.6e-69 268.1 598 56.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 4.8e-69 266.5 598 58.5
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.9e-66 257.3 596 44.3
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 3.8e-66 256.9 521 55.7
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-65 255.4 697 54.8
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.9e-65 254.6 570 57.5
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 7.2e-65 252.7 521 62.8
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 1.6e-64 251.5 615 63.3
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 2.7e-64 250.8 598 57.0
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 3.6e-64 250.4 586 63.5
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 6.7e-63 246.1 319 59.6
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.9e-62 244.6 622 53.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 5.7e-62 243.0 597 55.1
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.6e-61 241.5 587 48.2
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 8.2e-61 239.2 603 54.4
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.1e-60 238.8 594 59.3
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.5e-59 235.0 443 65.5
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 7.7e-59 232.6 603 56.1
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.7e-58 231.5 625 52.5
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 5.0e-58 229.9 422 60.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 8.5e-58 229.2 611 53.7
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 3.2e-57 227.3 598 58.5
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 4.2e-57 226.9 598 56.9
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 7.9e-56 222.6 572 37.2
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 3.0e-55 220.7 598 53.7
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 3.0e-55 220.7 546 55.9
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 8.2e-53 212.6 645 53.2
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 7.7e-51 206.1 521 56.4
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 6.5e-50 203.0 597 52.3
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.1e-49 202.2 253 49.0
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.9e-49 201.4 602 56.8
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 2.5e-49 201.1 602 57.0
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.2e-49 200.7 423 45.2
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.6e-48 197.2 339 54.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 3.0e-47 194.1 222 64.0
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.5e-46 191.8 576 58.7
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 5.3e-44 183.3 607 51.7
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 9.4e-41 172.6 603 45.3
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 4.7e-40 170.2 598 58.9
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 4.0e-39 167.2 555 59.5
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 7.5e-38 162.9 583 43.9
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 5.3e-36 156.8 530 53.2
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 8.3e-29 132.9 198 58.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 9.8e-22 109.4 93 60.2
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 72.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 72.0
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.4e-20 105.5 75 69.3
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.1e-20 104.4 75 70.7
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 7.0e-20 103.2 75 70.7
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.0e-18 99.4 211 43.6
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 5.0e-18 97.1 102 79.4
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.6e-18 96.3 98 56.1
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.6e-16 92.0 79 62.0
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.4e-15 89.0 63 71.4
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.3e-13 82.4 75 53.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 1.7e-13 82.0 53 73.6
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 8.3e-13 79.7 98 72.4
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.1e-12 79.3 60 63.3
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.4e-12 79.0 106 67.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.4e-12 79.0 106 67.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.4e-12 79.0 106 67.9
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 3.2e-12 77.8 46 84.8
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 6.0e-11 73.6 64 54.7
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 7.3e-09 66.6 227 50.7
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 2.1e-08 65.1 295 28.5


User provided reference genes

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