Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 5.6e-107 391.0 199 100.0
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 7.4e-91 337.4 199 84.4
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.1e-90 335.9 201 85.1
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.8e-90 335.5 199 84.4
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.1e-89 333.6 199 83.4
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.6e-88 327.4 199 83.4
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.0e-80 302.8 199 78.9
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.7e-79 299.7 199 77.4
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.9e-79 298.9 198 75.8
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 3.2e-78 295.4 199 72.4
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.5e-78 294.7 199 72.4
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.4e-75 284.3 199 71.9
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.8e-74 281.6 199 71.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.3e-74 281.2 199 71.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.1e-65 251.9 165 77.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.6e-61 238.4 199 59.8
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 6.1e-61 238.0 193 62.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 5.1e-60 235.0 201 58.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.7e-60 234.6 193 59.6
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.1e-59 233.8 199 59.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.0e-59 233.0 167 72.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.4e-59 231.9 199 59.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.4e-59 231.9 196 60.2
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 5.7e-59 231.5 193 60.1
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 9.7e-59 230.7 192 59.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-58 230.3 193 59.1
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.2e-58 229.6 194 59.8
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.2e-58 229.6 194 59.8
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.8e-58 229.2 200 57.5
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 4.8e-58 228.4 200 57.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.3e-58 228.0 193 58.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.3e-58 228.0 197 57.4
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.1e-57 227.3 194 60.8
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.4e-57 226.9 155 72.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 2.4e-57 226.1 199 56.3
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 4.1e-57 225.3 194 58.8
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 6.9e-57 224.6 200 57.5
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.2e-56 223.8 195 58.5
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-56 223.8 199 57.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.0e-56 223.0 196 58.7
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 3.4e-56 222.2 198 56.1
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 5.9e-56 221.5 199 55.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 199 55.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.9e-55 219.2 197 54.8
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 2.9e-55 219.2 198 53.5
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 3.8e-55 218.8 199 58.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 6.5e-55 218.0 198 55.6
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.9e-54 216.5 198 54.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.9e-54 216.5 194 56.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.2e-54 215.7 197 54.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.2e-54 215.7 194 56.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.2e-54 215.3 200 53.0
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.6e-53 213.4 193 57.0
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.7e-53 212.6 200 54.0
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 3.6e-53 212.2 241 49.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-53 211.8 199 53.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.1e-53 211.5 194 54.6
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 7.9e-53 211.1 199 52.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.0e-52 210.7 194 54.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 3.0e-52 209.1 197 54.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.9e-52 208.8 200 55.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 6.7e-52 208.0 199 54.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.8e-52 207.6 194 53.6
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.1e-51 207.2 185 56.2
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.1e-51 207.2 195 54.4
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.5e-51 206.8 199 52.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 2.6e-51 206.1 199 53.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.8e-50 202.6 193 52.3
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.8e-50 202.6 189 52.9
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.7e-50 202.2 195 52.8
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 4.8e-50 201.8 199 51.3
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.2e-50 201.1 195 53.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 197 52.8
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.1e-49 200.7 199 53.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 199 51.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.4e-49 200.3 196 54.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.8e-49 199.9 197 54.8
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.4e-49 199.5 198 48.5
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.4e-49 199.5 198 53.5
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.1e-49 198.7 197 53.8
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 4.1e-49 198.7 191 52.4
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.1e-49 198.7 199 50.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.3e-49 198.4 197 53.3
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.6e-48 196.1 196 53.6
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.5e-48 195.7 187 51.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.5e-48 195.7 193 49.2
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 5.9e-48 194.9 199 51.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 5.9e-48 194.9 198 52.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-47 193.7 194 50.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.3e-47 193.7 192 52.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.2e-47 193.0 196 49.0
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.9e-47 192.6 193 52.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.9e-47 192.6 197 51.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.8e-47 192.2 187 49.7
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.8e-47 192.2 197 51.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.0e-47 191.8 187 50.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.5e-47 191.0 187 50.3
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.1e-46 190.7 197 50.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 2.5e-46 189.5 196 48.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.1e-45 186.4 196 52.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.1e-45 184.9 197 49.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.0e-44 184.1 151 60.3
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-44 183.3 199 49.7
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.8e-44 183.3 192 47.4
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.0e-44 182.6 199 48.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-43 180.6 199 48.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-43 180.6 199 48.7
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-43 180.6 197 49.7
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-43 179.9 199 48.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.3e-43 179.1 188 47.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 4.4e-43 178.7 199 47.7
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.4e-43 178.7 193 48.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.7e-43 178.3 186 47.3
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 7.5e-43 177.9 195 47.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.5e-43 177.9 195 47.7
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 9.7e-43 177.6 147 57.8
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.3e-42 177.2 192 46.4
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-42 177.2 193 46.6
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.7e-42 176.8 194 50.5
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.2e-42 176.4 192 46.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.2e-42 176.4 140 60.7
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.8e-42 176.0 194 45.4
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.8e-42 176.0 192 45.8
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.7e-42 175.6 192 46.4
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.8e-42 175.3 174 48.9
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.8e-41 173.3 174 51.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.4e-41 172.9 179 50.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 7.0e-41 171.4 194 45.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.0e-41 171.4 186 47.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 9.1e-41 171.0 187 47.1
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 9.1e-41 171.0 200 47.5
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-40 170.6 195 47.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.7e-40 169.5 179 46.9
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 4.5e-40 168.7 194 44.8
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 5.9e-40 168.3 197 48.2
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-39 167.5 199 47.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.8e-39 165.6 188 46.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 5.0e-39 165.2 186 45.2
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.5e-39 164.9 197 45.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 6.5e-39 164.9 186 45.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.1e-38 164.1 163 50.3
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.6e-37 160.2 193 43.5
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 3.6e-37 159.1 187 46.0
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.6e-37 159.1 190 44.2
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.7e-37 158.7 164 51.2
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.8e-36 156.8 190 42.1
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.4e-35 152.1 199 45.2
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 5.7e-35 151.8 192 42.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.7e-35 151.8 181 44.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.8e-34 149.4 124 58.1
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.4e-33 146.4 198 42.4
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.5e-32 142.5 197 41.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.5e-32 142.1 165 45.5
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-31 141.0 198 40.9
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.3e-31 140.6 197 41.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.0e-31 138.7 192 39.6
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 6.5e-31 138.3 126 54.8
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.9e-30 136.7 199 41.2
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.5e-30 136.3 140 50.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-29 134.0 200 42.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-25 120.9 130 47.7
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.8e-24 114.8 150 42.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 8.0e-21 104.8 114 47.4
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.4e-19 99.0 114 47.4
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.7e-18 95.9 188 35.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.3e-14 82.4 190 30.0
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 9.5e-14 81.3 101 39.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.1e-13 80.1 188 34.0
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.1e-12 76.3 105 44.8
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 3.1e-12 76.3 177 31.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.2e-11 74.3 210 26.7
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-11 74.3 84 47.6
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-11 73.6 90 53.3
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-06 57.4 166 28.3


User provided reference genes

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