Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38192 Trifolium pratense HOM05D004428 ORTHO05D048467 1.3e-70 269.6 135 100.0
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 1.0e-56 223.4 115 96.5
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 1.2e-44 183.3 115 81.7
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 3.0e-43 178.7 115 77.4
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 3.9e-43 178.3 115 80.9
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.3e-42 174.9 115 79.1
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.3e-42 174.9 115 79.1
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 5.6e-42 174.5 115 79.1
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 1.2e-41 173.3 115 78.3
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 2.1e-41 172.6 115 79.1
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 8.9e-40 167.2 115 76.5
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 7.6e-39 164.1 115 72.2
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 2.2e-38 162.5 115 71.3
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 2.2e-38 162.5 115 71.3
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.1e-37 160.2 115 69.6
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 9.2e-37 157.1 115 65.2
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.6e-36 156.4 115 67.0
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.6e-36 156.4 115 65.2
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 2.1e-36 156.0 115 64.3
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.7e-36 155.6 115 64.3
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 2.7e-36 155.6 115 66.1
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 2.7e-36 155.6 115 68.7
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 4.6e-36 154.8 115 65.2
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 7.8e-36 154.1 115 64.3
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 1.0e-35 153.7 115 67.0
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.3e-35 152.5 115 61.7
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.3e-35 152.5 115 63.5
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 2.3e-35 152.5 115 62.6
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 2.3e-35 152.5 115 67.8
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 3.0e-35 152.1 115 63.5
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 3.0e-35 152.1 115 67.0
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 3.9e-35 151.8 115 64.3
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 3.9e-35 151.8 115 62.6
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 6.6e-35 151.0 115 60.0
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 6.6e-35 151.0 115 62.6
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 8.6e-35 150.6 115 64.3
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 8.6e-35 150.6 115 64.3
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 8.6e-35 150.6 115 63.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.5e-34 149.8 115 64.3
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 1.9e-34 149.4 115 63.5
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 2.5e-34 149.1 115 63.5
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 2.5e-34 149.1 122 60.7
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 3.3e-34 148.7 115 64.3
Haze_22769 Corylus avellana HOM05D004428 ORTHO05D006381 3.3e-34 148.7 115 64.3
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 4.3e-34 148.3 115 60.9
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 4.3e-34 148.3 115 66.1
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 5.6e-34 147.9 115 64.3
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 5.6e-34 147.9 117 64.1
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 5.6e-34 147.9 116 63.8
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 5.6e-34 147.9 115 61.7
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 7.3e-34 147.5 115 63.5
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 1.2e-33 146.7 115 60.0
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 2.8e-33 145.6 116 62.1
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 4.7e-33 144.8 116 60.3
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 4.7e-33 144.8 115 64.3
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 1.1e-32 143.7 115 63.5
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 1.1e-32 143.7 115 60.9
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.4e-32 143.3 115 63.5
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 2.4e-32 142.5 115 60.0
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 2.4e-32 142.5 115 60.9
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.4e-32 142.5 115 60.9
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.4e-32 142.5 115 60.9
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 3.1e-32 142.1 114 61.4
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 3.1e-32 142.1 126 55.6
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 6.9e-32 141.0 115 60.0
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 6.9e-32 141.0 115 60.9
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 8.9e-32 140.6 115 60.0
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 8.9e-32 140.6 115 60.0
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.2e-31 140.2 115 60.0
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 1.2e-31 140.2 115 60.9
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 1.5e-31 139.8 115 60.0
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 2.0e-31 139.4 116 61.2
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 2.0e-31 139.4 116 61.2
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 2.0e-31 139.4 115 59.1
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.6e-31 139.0 115 60.0
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 2.6e-31 139.0 115 60.0
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 2.6e-31 139.0 115 60.0
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 3.4e-31 138.7 115 60.0
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 4.4e-31 138.3 117 59.8
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 4.4e-31 138.3 115 60.9
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 5.8e-31 137.9 116 59.5
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 5.8e-31 137.9 115 59.1
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 5.8e-31 137.9 115 59.1
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 5.8e-31 137.9 115 58.3
COL.COLO4_23022 Corchorus olitorius HOM05D004428 ORTHO05D006381 5.8e-31 137.9 92 65.2
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 5.8e-31 137.9 116 60.3
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 5.8e-31 137.9 115 60.0
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 5.8e-31 137.9 115 58.3
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 7.6e-31 137.5 117 60.7
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 7.6e-31 137.5 116 59.5
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 7.6e-31 137.5 116 61.2
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 1.7e-30 136.3 117 59.8
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 2.9e-30 135.6 116 57.8
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 3.8e-30 135.2 115 56.5
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 4.9e-30 134.8 116 59.5
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 8.4e-30 134.0 115 58.3
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 8.4e-30 134.0 115 58.3
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 1.1e-29 133.7 115 60.9
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 1.9e-29 132.9 115 57.4
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 2.4e-29 132.5 115 60.0
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 3.2e-29 132.1 115 57.4
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 3.2e-29 132.1 115 57.4
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 3.2e-29 132.1 115 58.3
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 4.2e-29 131.7 134 50.7
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 7.1e-29 131.0 115 58.3
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 1.6e-28 129.8 116 56.9
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.6e-28 129.8 115 58.3
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 2.1e-28 129.4 119 57.1
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 2.1e-28 129.4 119 57.1
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 2.1e-28 129.4 119 57.1
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 2.1e-28 129.4 118 57.6
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 2.1e-28 129.4 115 58.3
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 2.1e-28 129.4 115 59.1
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 2.7e-28 129.0 120 55.8
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 2.7e-28 129.0 134 51.5
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 3.5e-28 128.6 102 61.8
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 4.6e-28 128.3 116 55.2
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 1.0e-27 127.1 125 52.8
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 1.3e-27 126.7 115 56.5
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 2.1e-25 119.4 114 51.8
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 8.1e-25 117.5 112 50.9
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 3.1e-24 115.5 112 49.1
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 3.1e-24 115.5 112 49.1
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 5.3e-24 114.8 118 53.4
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 6.9e-24 114.4 96 60.4
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 9.0e-24 114.0 115 53.0
BcaB04g17056 Brassica carinata HOM05D004428 ORTHO05D006381 1.4e-21 106.7 94 56.4
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 7.1e-21 104.4 117 53.0
PSO339G3255 Papaver somniferum HOM05D004428 ORTHO05D006381 6.0e-20 101.3 113 47.8
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 1.0e-19 100.5 115 47.8
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 6.7e-19 97.8 114 44.7
Glyma.20G030400 Glycine max HOM05D004428 ORTHO05D035991 7.4e-18 94.4 54 87.0
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 2.8e-17 92.4 116 48.3
Lj2g0023471 Lotus japonicus HOM05D004428 ORTHO05D048467 1.3e-14 83.6 53 79.2
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 1.7e-14 83.2 86 53.5
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 9.3e-13 77.4 122 35.2
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 6.5e-06 54.7 111 30.6


User provided reference genes

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