Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 6.6e-85 317.4 168 100.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 8.4e-80 300.4 168 92.9
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.4e-74 282.3 169 88.2
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 3.5e-70 268.5 168 82.7
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 1.4e-66 256.5 168 78.0
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.4e-63 246.5 169 78.7
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 1.9e-63 246.1 168 76.8
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 2.5e-63 245.7 169 77.5
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.5e-63 244.6 169 76.3
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 2.7e-62 242.3 168 75.6
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 5.1e-61 238.0 169 75.1
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.1e-60 236.9 168 74.4
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.9e-60 236.1 169 75.1
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.7e-60 234.6 168 71.4
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 7.4e-60 234.2 168 71.4
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 9.7e-60 233.8 168 72.0
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 9.7e-60 233.8 168 73.2
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 9.7e-60 233.8 169 72.8
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 1.3e-59 233.4 168 71.4
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.3e-59 233.4 171 71.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.6e-59 233.0 169 72.2
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.6e-59 233.0 168 70.8
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.2e-59 232.6 169 72.2
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.8e-59 232.3 173 72.3
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 72.2
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.7e-59 231.9 168 70.2
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 71.6
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 6.3e-59 231.1 169 72.8
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 8.2e-59 230.7 168 69.6
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 8.2e-59 230.7 172 70.9
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 8.2e-59 230.7 168 69.0
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 8.2e-59 230.7 168 68.5
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 8.2e-59 230.7 169 73.4
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.4e-58 229.9 168 71.4
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.4e-58 229.9 169 69.8
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 1.4e-58 229.9 169 70.4
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.4e-58 229.9 168 71.4
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.8e-58 229.6 171 71.3
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.4e-58 229.2 168 68.5
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 4.1e-58 228.4 169 69.2
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 4.1e-58 228.4 168 70.2
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.1e-58 228.4 164 73.2
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 4.1e-58 228.4 168 70.8
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.3e-58 228.0 169 70.4
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 5.3e-58 228.0 169 71.0
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 6.9e-58 227.6 168 70.2
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.2e-57 226.9 168 67.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.2e-57 226.9 168 68.5
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.5e-57 226.5 169 70.4
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 2.0e-57 226.1 168 69.0
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 2.0e-57 226.1 168 69.0
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 2.0e-57 226.1 171 68.4
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.0e-57 226.1 171 69.6
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 2.0e-57 226.1 171 69.0
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 67.9
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 67.9
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 67.9
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 67.9
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 2.6e-57 225.7 169 71.6
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 3.4e-57 225.3 168 67.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 4.5e-57 224.9 168 67.3
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 4.5e-57 224.9 168 67.3
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 7.7e-57 224.2 169 69.2
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-56 223.0 168 69.0
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 1.7e-56 223.0 168 69.0
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.7e-56 223.0 169 69.2
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 1.7e-56 223.0 170 70.0
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.7e-56 223.0 171 69.0
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 2.2e-56 222.6 168 68.5
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 3.8e-56 221.9 168 68.5
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 3.8e-56 221.9 172 67.4
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 67.9
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 67.9
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 8.5e-56 220.7 168 68.5
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 8.5e-56 220.7 168 67.3
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.4e-55 219.9 168 66.7
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.4e-55 219.9 169 67.5
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 1.9e-55 219.5 168 69.0
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.9e-55 219.5 171 69.0
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.9e-55 219.5 168 69.0
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.5e-55 219.2 169 67.5
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.5e-55 219.2 171 69.0
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 3.2e-55 218.8 163 70.6
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.2e-55 218.4 168 65.5
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 67.3
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 67.3
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 9.4e-55 217.2 165 67.9
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 9.4e-55 217.2 169 68.0
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 9.4e-55 217.2 168 68.5
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.2e-54 216.9 171 67.3
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.2e-54 216.9 169 66.9
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.1e-54 216.1 173 65.3
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 66.3
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 66.3
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 66.3
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 67.1
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 64.1
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.4e-53 213.4 171 65.5
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 2.3e-53 212.6 168 69.0
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 6.7e-53 211.1 168 66.1
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 6.7e-53 211.1 170 67.1
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 8.8e-53 210.7 161 68.3
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.5e-52 209.9 168 63.7
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 4.3e-52 208.4 170 65.9
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.3e-52 208.4 166 65.7
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 5.7e-52 208.0 168 63.1
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 7.4e-52 207.6 170 65.3
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.7e-51 206.5 168 65.5
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.2e-51 206.1 171 66.7
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.8e-51 205.7 169 65.1
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.8e-51 204.9 170 62.4
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 6.3e-51 204.5 169 62.7
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 8.2e-51 204.1 100 100.0
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 63.2
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.1e-50 203.8 172 64.0
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 1.1e-50 203.8 169 66.9
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.1e-50 203.8 165 67.3
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.4e-50 203.4 157 66.9
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.4e-50 203.4 154 69.5
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.8e-50 203.0 171 64.3
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.4e-50 202.6 170 62.9
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 2.4e-50 202.6 164 64.0
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 3.1e-50 202.2 172 61.6
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.1e-50 202.2 172 62.2
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 3.1e-50 202.2 169 66.3
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 5.3e-50 201.4 171 62.6
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 5.3e-50 201.4 171 62.6
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 6.9e-50 201.1 166 65.7
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 6.9e-50 201.1 171 62.6
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.2e-49 200.3 171 64.9
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.0e-48 194.9 164 63.4
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.4e-47 193.4 168 61.3
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.9e-47 193.0 171 62.6
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.9e-47 193.0 171 62.6
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 5.5e-47 191.4 172 60.5
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 3.6e-46 188.7 174 60.9
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 1.8e-45 186.4 170 60.6
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.3e-45 186.0 168 61.3
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 2.3e-45 186.0 146 70.5
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 8.2e-43 177.6 169 60.9
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.6e-41 173.3 102 81.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 2.6e-41 172.6 169 59.8
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 3.5e-41 172.2 170 59.4
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.3e-40 170.2 102 78.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 8.5e-40 167.5 100 78.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 3.2e-39 165.6 176 54.5
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 3.3e-36 155.6 144 59.0
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 2.2e-35 152.9 174 50.0
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 4.8e-35 151.8 221 45.7
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 3.5e-33 145.6 174 44.3
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.5e-31 139.4 175 45.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.6e-30 136.7 169 45.6
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 4.7e-30 135.2 174 43.1
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 9.8e-28 127.5 122 52.5
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 6.3e-27 124.8 125 52.8
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.4e-26 122.9 70 78.6
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.0e-25 119.8 70 75.7
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 4.5e-25 118.6 171 45.6
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 2.9e-24 115.9 117 50.4
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.1e-23 114.0 178 44.9
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 5.5e-23 111.7 169 41.4
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 8.3e-19 97.8 81 59.3
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.4e-18 95.1 67 65.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 4.0e-13 79.0 44 81.8
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 1.3e-08 63.9 72 52.8


User provided reference genes

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