Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38073 Trifolium pratense HOM05D000122 ORTHO05D048440 1.3e-60 236.1 113 100.0
Atru.chr8.377 Acer truncatum HOM05D000122 ORTHO05D001883 2.5e-11 72.4 45 80.0
Cpa.g.sc14.141 Carica papaya HOM05D000122 ORTHO05D001883 2.5e-11 72.4 45 80.0
Ciclev10011184m.g Citrus clementina HOM05D000122 ORTHO05D001883 5.6e-11 71.2 45 77.8
Duzib147G0988 Durio zibethinus HOM05D000122 ORTHO05D001883 5.6e-11 71.2 45 77.8
Thecc.04G090500 Theobroma cacao HOM05D000122 ORTHO05D001883 5.6e-11 71.2 45 77.8
Aqoxy3G03560 Aquilegia oxysepala HOM05D000122 ORTHO05D001883 7.3e-11 70.9 45 77.8
arahy.Tifrunner.gnm1.ann1.4S0H6B Arachis hypogaea HOM05D000122 ORTHO05D001883 9.5e-11 70.5 45 77.8
arahy.Tifrunner.gnm1.ann1.YA5RRX Arachis hypogaea HOM05D000122 ORTHO05D001883 9.5e-11 70.5 45 77.8
Haze_14473 Corylus avellana HOM05D000122 ORTHO05D001883 9.5e-11 70.5 42 81.0
Medtr7g012260 Medicago truncatula HOM05D000122 ORTHO05D001883 9.5e-11 70.5 45 77.8
PSO384G2990 Papaver somniferum HOM05D000122 ORTHO05D001883 9.5e-11 70.5 45 77.8
PGR004G1300 Punica granatum HOM05D000122 ORTHO05D001883 9.5e-11 70.5 45 77.8
TPR.G33461 Trifolium pratense HOM05D000122 ORTHO05D001883 9.5e-11 70.5 45 77.8
Dinv33808 Davidia involucrata HOM05D000122 ORTHO05D001883 1.2e-10 70.1 45 77.8
Gohir.A09G012000 Gossypium hirsutum HOM05D000122 ORTHO05D001883 1.2e-10 70.1 45 75.6
Gorai.006G012600 Gossypium raimondii HOM05D000122 ORTHO05D001883 1.2e-10 70.1 45 75.6
Duzib187G1279 Durio zibethinus HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
Glyma.08G241600 Glycine max HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
Glyma.18G263900 Glycine max HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
Hma1.2p1_3044F.1_g332090 Hydrangea macrophylla HOM05D000122 ORTHO05D001883 1.6e-10 69.7 44 77.3
Lj4A115T88 Lonicera japonica HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 77.8
Lj1g0002587 Lotus japonicus HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
Phvul.008G036200 Phaseolus vulgaris HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
Potri.017G089800 Populus trichocarpa HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
VMungo1383G1493 Vigna mungo HOM05D000122 ORTHO05D001883 1.6e-10 69.7 45 75.6
CSS0009066 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
CSS0042780 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
Hma1.2p1_1813F.1_g303830 Hydrangea macrophylla HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
Manes.01G099300 Manihot esculenta HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
Nn3g17375 Nelumbo nucifera HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
QL02p039399 Quercus lobata HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
QL02p039656 Quercus lobata HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
TAR629G2304 Trochodendron aralioides HOM05D000122 ORTHO05D001883 2.1e-10 69.3 45 75.6
Cfa007622 Carpinus fangiana HOM05D000122 ORTHO05D001883 2.8e-10 68.9 42 78.6
Ca_06804_v3 Cicer arietinum L. HOM05D000122 ORTHO05D001883 2.8e-10 68.9 45 75.6
Lalb_Chr10g0093231 Lupinus albus HOM05D000122 ORTHO05D001883 2.8e-10 68.9 71 54.9
PSO339G3069 Papaver somniferum HOM05D000122 ORTHO05D001883 2.8e-10 68.9 40 85.0
CiPaw.03G091600 Carya illinoinensis HOM05D000122 ORTHO05D001883 3.6e-10 68.6 42 78.6
Actinidia01966 Actinidia chinensis HOM05D000122 ORTHO05D001883 4.7e-10 68.2 45 73.3
Actinidia01973 Actinidia chinensis HOM05D000122 ORTHO05D001883 4.7e-10 68.2 45 73.3
Dinv11489 Davidia involucrata HOM05D000122 ORTHO05D001883 4.7e-10 68.2 45 75.6
Hund15563 Selenicereus undatus HOM05D000122 ORTHO05D001883 4.7e-10 68.2 45 75.6
CSS0027865 Camellia sinensis var. sinensis HOM05D000122 ORTHO05D001883 8.1e-10 67.4 45 73.3
Lju41A7T37 Lonicera japonica HOM05D000122 ORTHO05D001883 8.1e-10 67.4 45 73.3
Nn4g23339 Nelumbo nucifera HOM05D000122 ORTHO05D001883 8.1e-10 67.4 45 73.3
Sabra17G0079000 Salix brachista HOM05D000122 ORTHO05D001883 8.1e-10 67.4 45 73.3
CiPaw.04G058800 Carya illinoinensis HOM05D000122 ORTHO05D001883 1.1e-09 67.0 42 73.8
Eucgr.I01988 Eucalyptus grandis HOM05D000122 ORTHO05D001883 1.1e-09 67.0 45 73.3
Gohir.D09G010900 Gossypium hirsutum HOM05D000122 ORTHO05D001883 1.1e-09 67.0 45 73.3
vmacro05667 Vaccinium macrocarpon HOM05D000122 ORTHO05D001883 1.1e-09 67.0 45 73.3
CAN.G206.196 Capsicum annuum HOM05D000122 ORTHO05D001883 1.4e-09 66.6 45 73.3
Manes.02G051000 Manihot esculenta HOM05D000122 ORTHO05D001883 1.4e-09 66.6 45 73.3
Peaxi162Scf00166g00824 Petunia axillaris HOM05D000122 ORTHO05D001883 1.4e-09 66.6 45 73.3
Solyc02g088560.4 Solanum lycopersicum HOM05D000122 ORTHO05D001883 1.4e-09 66.6 45 73.3
Sopen02g033280 Solanum pennellii HOM05D000122 ORTHO05D001883 1.4e-09 66.6 45 73.3
PGSC0003DMG400001441 Solanum tuberosum HOM05D000122 ORTHO05D001883 1.4e-09 66.6 45 73.3
ATR0111G032 Amborella trichopoda HOM05D000122 ORTHO05D001883 1.8e-09 66.2 41 73.2
Rhsim10G0046800 Rhododendron simsii HOM05D000122 ORTHO05D001883 1.8e-09 66.2 42 76.2
ClCG11G004620 Citrullus lanatus HOM05D000122 ORTHO05D001883 2.3e-09 65.9 45 71.1
Sabra04G0066200 Salix brachista HOM05D000122 ORTHO05D001883 2.3e-09 65.9 45 73.3
Sed0016242 Sechium edule HOM05D000122 ORTHO05D001883 2.3e-09 65.9 45 71.1
SEGI_20140 Sequoiadendron giganteum HOM05D000122 ORTHO05D001883 2.3e-09 65.9 71 50.7
DCAR_025405 Daucus carota HOM05D000122 ORTHO05D001883 3.1e-09 65.5 45 68.9
MSTRG.3023 Avicennia marina HOM05D000122 ORTHO05D001883 4.0e-09 65.1 79 49.4
Cfa013592 Carpinus fangiana HOM05D000122 ORTHO05D001883 4.0e-09 65.1 68 51.5
Sc10g0003310 Simmondsia chinensis HOM05D000122 ORTHO05D001883 4.0e-09 65.1 45 73.3
TWI32G0070 Tripterygium wilfordii HOM05D000122 ORTHO05D001883 4.0e-09 65.1 71 53.5
CANSAT64G0581 Cannabis sativa HOM05D000122 ORTHO05D001883 5.2e-09 64.7 45 71.1
Cfa013593 Carpinus fangiana HOM05D000122 ORTHO05D001883 6.8e-09 64.3 68 51.5
COL.COLO4_07428 Corchorus olitorius HOM05D000122 ORTHO05D001883 6.8e-09 64.3 43 72.1
Lsat_1_v5_gn_7_78601 Lactuca sativa HOM05D000122 ORTHO05D001883 6.8e-09 64.3 45 71.1
Lsat_1_v5_gn_9_119321 Lactuca sativa HOM05D000122 ORTHO05D001883 6.8e-09 64.3 45 71.1
Ah.12g062590 Amaranthus hybridus HOM05D000122 ORTHO05D001883 8.9e-09 63.9 45 71.1
EL10Ac1g00059 Beta vulgaris HOM05D000122 ORTHO05D001883 8.9e-09 63.9 45 71.1
BcaNung03310 Brassica carinata HOM05D000122 ORTHO05D001883 8.9e-09 63.9 42 73.8
A10p23480 Brassica napus HOM05D000122 ORTHO05D001883 8.9e-09 63.9 42 73.8
BraA10t44415Z Brassica rapa HOM05D000122 ORTHO05D001883 8.9e-09 63.9 42 73.8
AUR62018142 Chenopodium quinoa HOM05D000122 ORTHO05D001883 8.9e-09 63.9 45 71.1
AUR62042559 Chenopodium quinoa HOM05D000122 ORTHO05D001883 8.9e-09 63.9 45 71.1
Thhalv10012798m.g Eutrema salsugineum HOM05D000122 ORTHO05D001883 8.9e-09 63.9 42 73.8
FAN09G1768 Fragaria x ananassa HOM05D000122 ORTHO05D001883 8.9e-09 63.9 45 68.9
HanXRQChr03g0071771 Helianthus annuus HOM05D000122 ORTHO05D001883 8.9e-09 63.9 45 71.1
Lj4C115T17 Lonicera japonica HOM05D000122 ORTHO05D048440 1.2e-08 63.5 40 75.0
Lalb_Chr04g0258541 Lupinus albus HOM05D000122 ORTHO05D001883 1.2e-08 63.5 71 49.3
Mapoly0004s0205 Marchantia polymorpha HOM05D000122 ORTHO05D000139 1.2e-08 63.5 71 52.1
TAR371G0724 Trochodendron aralioides HOM05D000122 ORTHO05D001883 1.2e-08 63.5 45 71.1
TAR371G0981 Trochodendron aralioides HOM05D000122 ORTHO05D001883 1.2e-08 63.5 45 71.1
AL6G26270 Arabidopsis lyrata HOM05D000122 ORTHO05D001883 1.5e-08 63.2 42 73.8
C09p61710 Brassica napus HOM05D000122 ORTHO05D001883 1.5e-08 63.2 40 77.5
BolC9t59010H Brassica oleracea HOM05D000122 ORTHO05D001883 1.5e-08 63.2 40 77.5
Carub.0006s1358 Capsella rubella HOM05D000122 ORTHO05D001883 1.5e-08 63.2 42 71.4
CARHR197900 Cardamine hirsuta HOM05D000122 ORTHO05D001883 1.5e-08 63.2 40 77.5
Gohir.A05G369900 Gossypium hirsutum HOM05D000122 ORTHO05D001883 1.5e-08 63.2 45 71.1
Gohir.D04G045400 Gossypium hirsutum HOM05D000122 ORTHO05D001883 1.5e-08 63.2 45 71.1
Sp6g28680 Schrenkiella parvula HOM05D000122 ORTHO05D001883 1.5e-08 63.2 40 77.5
TWI60G0098 Tripterygium wilfordii HOM05D000122 ORTHO05D001883 1.5e-08 63.2 45 71.1
MELO3C022020.2 Cucumis melo HOM05D000122 ORTHO05D001883 2.0e-08 62.8 45 66.7
CsaV3_5G038390 Cucumis sativus L. HOM05D000122 ORTHO05D001883 2.0e-08 62.8 45 66.7
THA.LOC104821010 Tarenaya hassleriana HOM05D000122 ORTHO05D001883 2.0e-08 62.8 42 73.8
AT5G15410 Arabidopsis thaliana HOM05D000122 ORTHO05D001883 2.6e-08 62.4 40 77.5
CANSAT56G4025 Cannabis sativa HOM05D000122 ORTHO05D001883 2.6e-08 62.4 66 51.5
Cc07_g03860 Coffea canephora HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
ECA240G2297 Erigeron canadensis HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 68.9
FvH4_6g47520 Fragaria vesca HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
FAN02G4329 Fragaria x ananassa HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
FAN14G1421 Fragaria x ananassa HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
Gorai.012G050600 Gossypium raimondii HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 71.1
MD09G1061000 Malus domestica HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
MD17G1056400 Malus domestica HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
Prupe.3G259100 Prunus persica HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
RcHm_v2.0_Chr2g0166581 Rosa chinensis HOM05D000122 ORTHO05D001883 2.6e-08 62.4 45 66.7
Zm00001eb057860 Zea mays HOM05D000122 ORTHO05D001883 3.4e-08 62.0 45 64.4
Zm00001eb214540 Zea mays HOM05D000122 ORTHO05D001883 3.4e-08 62.0 45 64.4
Migut.K01295 Erythranthe guttata HOM05D000122 ORTHO05D001883 4.4e-08 61.6 45 66.7
HanXRQChr09g0246121 Helianthus annuus HOM05D000122 ORTHO05D001883 4.4e-08 61.6 47 66.0
Lj4C115T18 Lonicera japonica HOM05D000122 ORTHO05D001883 4.4e-08 61.6 45 64.4
Os03g0758300 Oryza sativa ssp. japonica HOM05D000122 ORTHO05D001883 4.4e-08 61.6 45 64.4
FAN05G0545 Fragaria x ananassa HOM05D000122 ORTHO05D001883 5.8e-08 61.2 45 64.4
PGR083G1869 Punica granatum HOM05D000122 ORTHO05D001883 5.8e-08 61.2 42 71.4
CiPaw.07G184500 Carya illinoinensis HOM05D000122 ORTHO05D001883 7.5e-08 60.8 68 55.9
DCAR_011060 Daucus carota HOM05D000122 ORTHO05D001883 9.9e-08 60.5 45 62.2
Migut.H00655 Erythranthe guttata HOM05D000122 ORTHO05D001883 2.9e-07 58.9 80 47.5
SalBow1G1307 Salvia bowleyana HOM05D000122 ORTHO05D001883 3.7e-07 58.5 71 47.9
GSVIVG01011487001 Vitis vinifera HOM05D000122 ORTHO05D001883 3.7e-07 58.5 45 64.4
ECA238G0221 Erigeron canadensis HOM05D000122 ORTHO05D001883 4.9e-07 58.2 45 62.2
MD07G1248200 Malus domestica HOM05D000122 ORTHO05D001883 4.9e-07 58.2 66 50.0
FAN01G2494 Fragaria x ananassa HOM05D000122 ORTHO05D001883 6.4e-07 57.8 94 40.4
HanXRQChr14g0448691 Helianthus annuus HOM05D000122 ORTHO05D001883 6.4e-07 57.8 44 61.4
Lsat_1_v5_gn_2_87960 Lactuca sativa HOM05D000122 ORTHO05D001883 6.4e-07 57.8 42 61.9
HPP92_014242 Vanilla planifolia HOM05D000122 ORTHO05D001883 8.3e-07 57.4 42 66.7
HPP92_026503 Vanilla planifolia HOM05D000122 ORTHO05D001883 8.3e-07 57.4 42 66.7
Actinidia05145 Actinidia chinensis HOM05D000122 ORTHO05D001883 1.1e-06 57.0 120 34.2
Aa31LG11G14150 Aethionema arabicum HOM05D000122 ORTHO05D001883 1.1e-06 57.0 42 66.7
SMO172G0189 Selaginella moellendorffii HOM05D000122 ORTHO05D000139 1.1e-06 57.0 91 42.9
Duzib147G1673 Durio zibethinus HOM05D000122 ORTHO05D001883 1.4e-06 56.6 45 64.4
FvH4_7g26890 Fragaria vesca HOM05D000122 ORTHO05D001883 1.4e-06 56.6 94 40.4
FAN03G2276 Fragaria x ananassa HOM05D000122 ORTHO05D001883 1.4e-06 56.6 94 40.4
FAN06G2195 Fragaria x ananassa HOM05D000122 ORTHO05D001883 1.4e-06 56.6 94 40.4
FAN10G3845 Fragaria x ananassa HOM05D000122 ORTHO05D001883 1.4e-06 56.6 94 40.4
SMO351G0497 Selaginella moellendorffii HOM05D000122 ORTHO05D001883 1.4e-06 56.6 68 50.0
vmacro18162 Vaccinium macrocarpon HOM05D000122 ORTHO05D001883 2.4e-06 55.8 72 48.6
Gohir.D09G010800 Gossypium hirsutum HOM05D000122 ORTHO05D001883 3.2e-06 55.5 42 66.7
Gorai.006G012500 Gossypium raimondii HOM05D000122 ORTHO05D001883 3.2e-06 55.5 42 66.7
RcHm_v2.0_Chr1g0373561 Rosa chinensis HOM05D000122 ORTHO05D001883 3.2e-06 55.5 66 47.0
Manes.02G051100 Manihot esculenta HOM05D000122 ORTHO05D001883 4.1e-06 55.1 42 61.9
Potri.017G089900 Populus trichocarpa HOM05D000122 ORTHO05D001883 4.1e-06 55.1 45 60.0
Thecc.04G090600 Theobroma cacao HOM05D000122 ORTHO05D001883 4.1e-06 55.1 45 62.2
CBR_g17606 Chara braunii HOM05D000122 ORTHO05D000139 5.4e-06 54.7 71 45.1
Ciclev10011242m.g Citrus clementina HOM05D000122 ORTHO05D001883 5.4e-06 54.7 39 74.4
Gohir.A09G011800 Gossypium hirsutum HOM05D000122 ORTHO05D001883 5.4e-06 54.7 42 66.7
Aqoxy1G03890 Aquilegia oxysepala HOM05D000122 ORTHO05D001883 7.1e-06 54.3 45 57.8
COL.COLO4_21371 Corchorus olitorius HOM05D000122 ORTHO05D001883 7.1e-06 54.3 45 62.2
Rhsim08G0073400 Rhododendron simsii HOM05D000122 ORTHO05D001883 7.1e-06 54.3 46 63.0
THA.LOC104822344 Tarenaya hassleriana HOM05D000122 ORTHO05D001883 7.1e-06 54.3 43 62.8
Ca_01799_v3 Cicer arietinum L. HOM05D000122 ORTHO05D001883 9.2e-06 53.9 68 45.6
Eucgr.J01368 Eucalyptus grandis HOM05D000122 ORTHO05D001883 9.2e-06 53.9 40 70.0


User provided reference genes

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