Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 2364.0 1227 100.0
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 2003.4 1262 83.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 0.0e+00 1819.3 1192 80.6
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1776.1 1286 73.6
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1733.0 1326 70.2
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1721.1 1325 70.4
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1710.3 1332 70.1
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1699.5 1331 69.0
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 0.0e+00 1518.8 1313 64.9
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1496.1 1247 65.6
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1492.2 1260 65.1
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1312.0 1310 57.2
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1262.3 1235 57.8
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1213.7 1312 54.3
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1186.4 1273 52.0
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1172.9 1298 53.2
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1169.5 1216 56.0
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1153.7 1295 51.0
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1150.6 1278 51.3
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1122.5 1260 53.6
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.4e-309 1066.6 1359 47.8
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 5.6e-306 1054.7 1331 47.6
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 9.5e-306 1053.9 1353 47.2
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 3.2e-301 1038.9 1337 48.8
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.6e-300 1036.6 1344 47.3
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.7e-300 1035.8 924 61.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 4.3e-298 1028.5 1280 49.8
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.2e-295 1020.4 1284 49.2
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.1e-293 1011.9 1273 48.7
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 3.0e-291 1005.7 1239 50.0
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 3.7e-286 988.8 1276 48.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 1.1e-285 987.3 1402 45.2
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.9e-282 976.5 1272 48.3
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.4e-279 965.7 1231 47.0
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.7e-278 963.4 1238 46.7
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.9e-278 961.8 1323 45.4
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 2.4e-277 959.5 1261 48.2
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 9.6e-274 947.6 648 78.2
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 9.6e-274 947.6 1359 44.7
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 3.6e-273 945.7 1372 44.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.7e-270 936.8 1308 43.5
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.8e-264 916.8 1310 46.0
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.8e-264 916.8 1376 42.7
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 2.0e-263 913.3 1317 45.0
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.4e-263 912.5 1265 46.2
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 7.1e-261 904.8 1305 44.7
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.7e-260 902.9 1264 46.3
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 6.0e-260 901.7 1321 43.3
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 9.6e-258 894.4 1260 43.2
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 9.3e-253 877.9 1378 42.2
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.5e-250 870.5 1247 45.1
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 5.8e-247 858.6 1292 43.6
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 1.3e-246 857.4 1190 45.2
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.1e-243 845.5 1248 44.0
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 3.3e-242 842.8 1227 44.1
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 4.8e-241 839.0 1234 42.7
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 7.2e-237 825.1 1229 42.1
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 7.2e-229 798.5 1241 43.8
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.6e-228 797.3 1252 43.7
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 5.7e-226 788.9 1262 42.5
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 2.9e-214 750.0 1359 36.8
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.8e-211 740.7 1057 43.2
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 3.1e-208 729.9 922 46.7
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 7.0e-208 728.8 1368 39.0
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.4e-203 714.5 1241 40.0
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.0e-198 698.4 1185 40.9
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.4e-192 677.9 1267 38.5
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 3.2e-192 676.8 1270 38.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 4.6e-191 672.9 972 42.8
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 3.0e-190 670.2 1223 36.7
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.6e-188 664.5 1286 38.4
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 8.9e-187 658.7 1267 38.1
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 4.3e-181 639.8 1261 37.8
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 5.6e-181 639.4 1195 38.0
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 3.6e-180 636.7 1250 37.6
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 5.2e-179 632.9 1232 38.5
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.2e-177 627.5 1282 37.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 2.3e-174 617.5 1245 36.9
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 3.0e-174 617.1 1213 38.7
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 3.3e-173 613.6 1242 35.3
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 7.3e-173 612.5 1252 36.7
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 3.6e-172 610.1 1252 36.3
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 3.4e-170 603.6 1262 36.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 6.8e-163 579.3 1205 33.7
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 9.3e-160 568.9 672 51.2
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 2.8e-156 557.4 1187 36.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.5e-154 550.1 1179 33.0
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-147 528.9 1259 34.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 6.9e-147 526.2 750 43.9
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.5e-141 507.7 698 47.0
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 4.3e-133 480.3 1404 31.1
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 2.9e-121 441.0 917 38.2
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 9.7e-117 426.0 480 52.9
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.8e-116 424.5 427 58.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 8.2e-100 369.8 547 41.3
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.1e-99 369.4 895 32.6
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.7e-97 362.1 1126 28.3
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 5.7e-85 320.5 187 82.9
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 9.8e-77 293.1 170 83.5
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.9e-76 291.6 203 74.4
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 2.4e-75 288.5 1494 26.6
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.7e-73 282.3 703 34.4
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 1.7e-68 265.8 225 64.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 4.9e-68 264.2 256 52.3
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 2.1e-63 248.8 1659 24.4
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 3.6e-63 248.1 255 56.1
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 5.2e-62 244.2 160 70.6
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.0e-61 242.3 346 41.3
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 3.4e-53 214.9 323 44.0
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 4.6e-50 204.5 159 66.0
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 9.0e-46 190.3 108 84.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 6.4e-44 184.1 1256 23.9
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.5e-40 172.9 105 76.2
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 2.5e-40 172.2 120 70.8
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 1.1e-35 156.8 89 84.3
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.6e-34 152.9 149 49.0
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.7e-34 152.1 125 67.2
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.5e-32 146.4 150 48.0
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-21 110.2 85 58.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-21 109.8 61 82.0
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 2.6e-21 109.0 213 36.6
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 3.4e-21 108.6 85 58.8
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.8e-15 89.0 54 72.2
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.1e-14 87.0 89 49.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.0e-13 82.8 77 50.6
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 4.5e-13 81.6 77 49.4
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 7.6e-13 80.9 46 82.6
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 6.5e-12 77.8 177 33.9
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 2.5e-11 75.9 118 39.8
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.1e-10 72.8 148 33.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 6.1e-10 71.2 74 48.6
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.3e-09 70.1 51 60.8
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.8e-09 69.7 189 31.2
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 3.3e-08 65.5 112 37.5
arahy.Tifrunner.gnm1.ann1.CWP81L Arachis hypogaea HOM05D001879 ORTHO05D021484 3.1e-06 58.9 93 39.8
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 6.9e-06 57.8 54 51.9


User provided reference genes

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