Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.9e-229 799.3 560 100.0
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 8.2e-180 634.4 560 68.2
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 3.3e-173 612.5 559 77.5
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.2e-159 567.4 560 68.9
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.4e-158 563.9 560 66.8
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 9.7e-157 557.8 561 67.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.7e-156 557.0 545 72.3
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.3e-150 536.6 558 65.4
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.2e-146 524.2 569 66.6
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.0e-145 521.2 563 61.3
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 8.6e-145 518.1 576 65.5
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 9.5e-144 514.6 564 61.5
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.9e-129 466.1 571 56.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 9.5e-128 461.5 556 57.9
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.8e-127 459.9 547 55.9
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.4e-126 457.6 573 58.3
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.0e-126 456.1 540 59.1
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 6.8e-126 455.3 562 59.4
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.9e-124 449.9 550 59.3
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 3.2e-123 446.4 544 56.1
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 9.2e-123 444.9 562 56.0
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 2.7e-122 443.4 564 60.5
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 3.0e-121 439.9 544 59.4
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 5.0e-121 439.1 535 59.6
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 5.0e-121 439.1 551 56.6
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 1.1e-120 438.0 556 55.4
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 4.3e-120 436.0 559 55.1
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 4.3e-120 436.0 563 59.9
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.2e-119 434.5 545 48.6
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.6e-119 433.0 558 59.3
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 8.1e-119 431.8 555 59.5
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.4e-118 431.0 554 54.9
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.2e-118 429.1 541 58.6
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 5.2e-118 429.1 544 55.7
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 6.8e-118 428.7 556 64.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.0e-117 427.2 552 54.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.6e-117 426.8 559 60.3
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.8e-117 425.6 538 58.7
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 5.8e-117 425.6 550 60.7
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 7.5e-117 425.2 553 56.8
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 9.9e-117 424.9 586 54.1
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 2.9e-116 423.3 556 55.6
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.9e-116 423.3 569 58.0
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.9e-116 422.5 565 57.9
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 4.9e-116 422.5 611 55.2
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.1e-115 421.4 545 62.4
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.9e-115 420.6 545 47.5
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 9.2e-115 418.3 591 53.8
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 1.2e-114 417.9 553 56.2
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.5e-114 416.4 549 61.2
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 6.0e-114 415.6 569 56.6
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.3e-113 414.5 564 61.5
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 2.3e-113 413.7 557 61.8
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 3.0e-113 413.3 544 55.7
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 5.1e-113 412.5 554 56.3
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 6.6e-113 412.1 557 57.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 6.6e-113 412.1 551 51.5
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 6.6e-113 412.1 613 55.1
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.5e-112 411.0 588 55.1
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.9e-112 410.6 552 52.7
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.9e-112 410.6 557 61.6
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.6e-112 409.1 550 56.0
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 7.3e-112 408.7 564 57.3
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.2e-111 407.9 544 55.5
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.8e-111 406.8 556 58.8
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 2.8e-111 406.8 554 54.5
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.7e-111 406.0 550 54.0
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.4e-110 404.4 552 55.3
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 1.8e-110 404.1 549 52.5
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 1.8e-110 404.1 615 50.7
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.1e-110 403.3 549 55.6
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 4.0e-110 402.9 543 53.6
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.2e-109 401.4 551 57.2
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.6e-109 400.2 544 55.5
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 3.4e-109 399.8 553 55.3
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.3e-108 397.9 553 53.2
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.3e-108 397.9 554 53.4
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.9e-108 396.7 545 56.3
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 3.8e-108 396.4 554 52.7
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.1e-107 394.8 553 53.2
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.1e-107 394.8 533 45.4
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.9e-107 394.0 558 51.1
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 4.1e-107 392.9 558 52.2
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 5.4e-107 392.5 568 52.8
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.3e-105 387.1 575 51.0
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 3.9e-105 386.3 562 54.3
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.5e-104 384.4 552 47.8
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 8.1e-103 378.6 527 46.3
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.4e-102 377.9 552 50.9
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 6.9e-102 375.6 555 46.7
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.2e-101 374.8 557 55.8
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 9.9e-101 371.7 576 48.3
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 2.2e-100 370.5 608 55.9
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.9e-100 370.2 568 51.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 3.8e-100 369.8 575 49.2
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 8.4e-100 368.6 583 48.2
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.4e-99 367.9 580 55.5
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 3.2e-99 366.7 547 46.8
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 5.4e-99 365.9 549 51.5
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 7.1e-99 365.5 530 43.0
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 3.9e-97 359.8 541 49.2
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 5.1e-97 359.4 510 44.5
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.1e-95 354.0 563 48.0
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 4.8e-95 352.8 567 52.9
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 7.9e-90 335.5 559 50.4
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.0e-89 335.1 554 52.3
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.9e-88 330.9 533 52.5
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.3e-87 328.2 493 50.1
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.5e-80 303.9 302 60.9
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 9.6e-80 302.0 271 63.5
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 4.0e-78 296.6 588 49.1
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.7e-72 276.2 233 61.8
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.6e-71 274.6 255 57.6
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.6e-69 267.3 551 44.8
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 4.5e-69 266.5 539 47.3
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 4.2e-67 260.0 528 41.9
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.0e-57 228.8 193 66.3
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 7.4e-56 222.6 261 51.7
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 5.3e-54 216.5 161 73.3
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 5.0e-52 209.9 393 43.8
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 5.5e-51 206.5 253 51.0
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 2.6e-48 197.6 146 67.1
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 6.3e-47 193.0 244 47.5
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.4e-46 191.8 247 47.0
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.6e-45 188.3 126 80.2
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 3.0e-41 174.1 246 48.0
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 2.2e-39 167.9 357 44.8
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.1e-38 164.1 153 58.8
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.1e-38 164.1 153 58.8
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.9e-35 154.8 394 43.1
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 7.0e-30 136.3 237 37.6
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.3e-28 131.3 114 67.5
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.0e-25 120.9 152 53.3
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 1.1e-22 112.5 95 56.8
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.0e-21 108.2 146 45.2
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.6e-18 98.6 304 29.3
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.3e-15 86.3 62 66.1
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 5.4e-14 83.6 79 57.0
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 9.2e-14 82.8 71 67.6
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 9.2e-14 82.8 85 55.3
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.0e-12 79.3 60 63.3
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.3e-12 78.2 63 69.8
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 5.0e-12 77.0 62 64.5
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.9e-11 75.1 101 46.5
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 4.3e-11 73.9 61 59.0
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 2.0e-08 65.1 69 53.6
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 2.9e-07 61.2 37 86.5
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-06 59.3 73 46.6
Psat4g000680 Pisum sativum HOM05D004813 ORTHO05D329103 3.2e-06 57.8 126 35.7


User provided reference genes

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