Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 1.3e-15 85.1 39 100.0
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 1.1e-14 82.0 39 97.4
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 1.1e-14 82.0 39 97.4
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.1e-14 82.0 39 97.4
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.7e-12 74.7 38 92.1
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 1.7e-12 74.7 39 89.7
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 1.7e-12 74.7 39 89.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 1.7e-12 74.7 39 89.7
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 3.0e-12 73.9 39 89.7
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 3.9e-12 73.6 39 87.2
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 6.6e-12 72.8 39 87.2
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 4.3e-11 70.1 39 79.5
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 7.3e-11 69.3 39 76.9
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 9.6e-11 68.9 39 79.5
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 2.1e-10 67.8 38 78.9
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 2.8e-10 67.4 39 74.4
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.6e-10 67.0 38 76.3
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.6e-10 67.0 38 76.3
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 3.6e-10 67.0 38 76.3
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 4.7e-10 66.6 38 78.9
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 4.7e-10 66.6 38 78.9
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 4.7e-10 66.6 38 78.9
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 6.2e-10 66.2 38 73.7
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 6.2e-10 66.2 38 73.7
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 6.2e-10 66.2 38 73.7
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 6.2e-10 66.2 39 71.8
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 6.2e-10 66.2 38 78.9
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 6.2e-10 66.2 39 71.8
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 6.2e-10 66.2 39 71.8
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 8.1e-10 65.9 38 78.9
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 8.1e-10 65.9 39 71.8
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 8.1e-10 65.9 38 76.3
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 1.1e-09 65.5 38 76.3
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 1.4e-09 65.1 39 76.9
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 1.8e-09 64.7 39 71.8
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 2.4e-09 64.3 38 71.1
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 2.4e-09 64.3 38 76.3
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 2.4e-09 64.3 39 74.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.0e-09 63.5 38 73.7
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.0e-09 63.5 38 76.3
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.0e-09 63.5 38 76.3
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 4.0e-09 63.5 38 71.1
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 4.0e-09 63.5 38 71.1
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 5.2e-09 63.2 39 74.4
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 6.9e-09 62.8 38 68.4
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 6.9e-09 62.8 38 76.3
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.9e-09 62.8 38 76.3
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.9e-09 62.8 38 76.3
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 6.9e-09 62.8 38 76.3
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 8.9e-09 62.4 38 71.1
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 1.2e-08 62.0 38 73.7
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 1.2e-08 62.0 38 71.1
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-08 62.0 38 73.7
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 1.2e-08 62.0 38 73.7
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 2.0e-08 61.2 39 69.2
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 2.6e-08 60.8 36 72.2
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 2.6e-08 60.8 36 72.2
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 2.6e-08 60.8 38 71.1
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 2.6e-08 60.8 38 71.1
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 3.4e-08 60.5 38 73.7
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 3.4e-08 60.5 38 73.7
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 3.4e-08 60.5 39 66.7
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 3.4e-08 60.5 38 73.7
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 3.4e-08 60.5 38 73.7
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 4.4e-08 60.1 38 73.7
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 5.8e-08 59.7 39 66.7
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 7.6e-08 59.3 38 68.4
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 9.9e-08 58.9 36 69.4
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 9.9e-08 58.9 36 69.4
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 1.3e-07 58.5 38 65.8
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 1.3e-07 58.5 35 71.4
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-07 58.5 37 73.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 1.7e-07 58.2 35 74.3
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.2e-07 57.8 38 63.2
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 2.9e-07 57.4 38 68.4
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 6.4e-07 56.2 38 65.8
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 6.4e-07 56.2 39 59.0
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 6.4e-07 56.2 39 66.7
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 6.4e-07 56.2 39 61.5
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 6.4e-07 56.2 38 63.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 6.4e-07 56.2 38 65.8
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 8.4e-07 55.8 38 65.8
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.1e-06 55.5 38 65.8
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 1.1e-06 55.5 35 68.6
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 1.4e-06 55.1 38 65.8
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.4e-06 55.1 38 63.2
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.9e-06 54.7 38 65.8
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.9e-06 54.7 38 65.8
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.9e-06 54.7 38 63.2
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.4e-06 54.3 38 65.8
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 2.4e-06 54.3 38 63.2
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 3.2e-06 53.9 38 65.8
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 3.2e-06 53.9 37 64.9
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 5.4e-06 53.1 39 61.5


User provided reference genes

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