Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 3.2e-198 694.9 356 100.0
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 5.2e-188 661.0 356 94.9
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.0e-183 646.7 356 93.3
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 3.4e-179 631.7 356 91.9
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 8.3e-178 627.1 356 91.3
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 5.6e-166 587.8 357 84.9
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 5.6e-166 587.8 357 84.9
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 3.7e-162 575.1 357 83.8
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.4e-161 573.2 357 83.5
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 4.6e-160 568.2 371 81.7
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 5.6e-158 561.2 369 80.8
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 4.4e-155 551.6 339 83.8
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 4.4e-155 551.6 358 81.8
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 6.2e-149 531.2 308 87.3
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 3.0e-143 512.3 356 78.7
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.4e-140 502.7 356 74.2
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 2.0e-139 499.6 356 75.6
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 2.6e-139 499.2 364 72.5
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 8.4e-138 494.2 302 83.4
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 1.1e-137 493.8 355 73.5
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.9e-137 493.0 303 80.9
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 4.2e-137 491.9 317 81.7
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 5.4e-137 491.5 358 72.9
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 4.6e-136 488.4 356 73.6
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 4.6e-136 488.4 320 78.1
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 4.6e-136 488.4 325 78.2
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.8e-135 486.5 356 74.4
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 3.0e-135 485.7 341 75.4
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 3.9e-135 485.3 364 71.7
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.9e-135 485.3 298 81.9
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 5.1e-135 485.0 297 84.8
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 5.1e-135 485.0 311 80.1
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 1.1e-134 483.8 329 77.5
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.1e-134 483.8 298 83.9
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 1.1e-134 483.8 301 83.4
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.5e-134 483.4 356 72.8
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.5e-134 483.4 304 81.9
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 5.6e-134 481.5 330 76.1
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.3e-133 480.3 356 72.5
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.1e-133 479.6 298 83.2
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 6.2e-133 478.0 364 71.2
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.0e-132 475.3 289 84.8
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 5.3e-132 474.9 310 79.4
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 9.0e-132 474.2 297 82.5
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.2e-131 473.8 296 83.1
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.5e-131 473.4 356 71.6
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 2.0e-131 473.0 298 81.9
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 5.8e-131 471.5 298 82.2
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.3e-130 470.3 295 82.7
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 2.5e-129 466.1 325 76.0
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 9.3e-129 464.2 358 69.6
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 9.3e-129 464.2 299 78.9
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 9.3e-129 464.2 356 69.1
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.1e-128 463.0 350 69.1
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.9e-128 461.1 301 78.7
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 1.0e-127 460.7 361 70.4
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.3e-127 460.3 327 73.1
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.8e-127 459.9 301 78.7
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 2.3e-127 459.5 350 68.9
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 2.3e-127 459.5 300 79.3
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 6.7e-127 458.0 301 78.1
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 6.7e-127 458.0 292 82.2
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.5e-126 456.8 352 68.8
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 3.3e-126 455.7 298 76.5
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 7.4e-126 454.5 301 75.4
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.1e-125 453.0 357 68.1
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 4.8e-125 451.8 350 68.9
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 3.1e-124 449.1 302 75.2
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 3.1e-124 449.1 299 75.6
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 3.1e-124 449.1 302 75.2
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 6.9e-124 448.0 302 74.8
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 9.0e-124 447.6 356 68.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 2.0e-123 446.4 358 68.4
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 2.0e-123 446.4 299 75.6
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.0e-123 446.4 299 75.6
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 5.8e-123 444.9 302 75.2
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 1.0e-122 444.1 299 75.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 2.2e-122 443.0 356 67.7
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 2.9e-122 442.6 310 76.5
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 8.4e-122 441.0 353 68.0
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 8.4e-122 441.0 292 79.5
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 4.2e-121 438.7 304 76.0
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 2.1e-120 436.4 319 73.7
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 4.6e-120 435.3 321 72.6
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 2.3e-119 433.0 308 74.0
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.1e-118 430.6 293 76.5
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 2.5e-118 429.5 358 65.9
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.7e-118 427.6 356 68.8
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 2.4e-116 422.9 358 65.6
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 4.1e-116 422.2 353 64.9
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.5e-115 420.2 314 72.3
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 4.5e-115 418.7 314 72.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 4.5e-115 418.7 290 75.2
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 5.9e-115 418.3 242 91.3
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.7e-114 416.8 329 67.5
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 3.8e-114 415.6 352 64.2
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 3.8e-114 415.6 328 69.2
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 8.5e-114 414.5 341 66.3
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.9e-113 413.3 300 74.0
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 7.2e-113 411.4 350 63.7
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.6e-112 410.2 289 73.7
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 3.6e-112 409.1 362 61.9
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 3.9e-111 405.6 353 63.5
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.7e-111 404.8 353 63.5
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 8.8e-111 404.4 353 63.2
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.5e-110 403.7 353 63.5
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.3e-110 402.1 353 62.9
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 3.7e-109 399.1 359 62.4
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 6.9e-108 394.8 258 76.7
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 1.0e-106 391.0 286 70.3
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 8.5e-106 387.9 258 77.1
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 9.4e-105 384.4 257 76.7
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 2.1e-104 383.3 262 74.4
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 2.3e-103 379.8 264 72.7
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 5.1e-103 378.6 258 74.8
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 1.5e-102 377.1 353 62.9
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 7.7e-99 364.8 299 64.9
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.7e-98 363.6 353 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 8.8e-95 351.3 245 74.3
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 6.5e-90 335.1 252 66.3
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.1e-84 317.8 252 64.3
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.4e-84 317.4 263 66.9
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.0e-79 301.2 177 91.0
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.8e-76 290.4 277 56.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 8.0e-72 275.0 301 55.1
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.4e-68 264.2 215 66.0
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 5.9e-67 258.8 191 74.3
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 7.8e-51 205.3 157 68.8
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 9.9e-46 188.3 124 71.8
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 6.0e-43 179.1 103 90.3
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 3.0e-34 150.2 103 77.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 3.0e-34 150.2 103 77.7
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.1e-31 141.7 103 65.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.1e-24 117.5 226 39.8
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.4e-20 104.8 63 82.5
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 3.2e-20 103.6 192 33.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 4.2e-12 76.6 43 81.4


User provided reference genes

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