Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 3.6e-166 589.3 666 100.0
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.7e-107 394.4 678 87.0
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 5.5e-90 336.3 352 79.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 9.1e-85 318.9 356 76.1
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 1.3e-83 315.1 322 74.8
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 2.1e-73 281.2 243 79.0
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 6.5e-59 233.0 264 67.0
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 9.4e-58 229.2 245 70.6
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.7e-57 226.9 220 73.2
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 3.5e-52 210.7 229 61.1
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 5.9e-52 209.9 229 61.1
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 5.5e-50 203.4 371 59.3
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.6e-49 201.8 228 67.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.1e-49 201.4 351 70.7
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.0e-47 194.9 228 65.4
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 4.4e-47 193.7 226 66.8
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 4.4e-47 193.7 226 66.8
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 4.4e-47 193.7 226 67.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 9.8e-47 192.6 328 61.0
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 9.8e-47 192.6 371 53.4
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.8e-46 191.0 223 66.8
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 2.4e-45 188.0 228 65.4
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.1e-45 187.6 228 63.2
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.1e-45 187.6 223 65.5
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.6e-44 185.3 227 64.3
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.6e-44 185.3 223 65.0
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.6e-44 185.3 223 65.0
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 5.9e-44 183.3 219 64.4
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 5.9e-44 183.3 321 72.6
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 7.8e-44 183.0 215 65.6
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.0e-43 182.6 223 64.6
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 2.3e-43 181.4 220 63.2
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-43 181.4 215 65.1
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 6.6e-43 179.9 226 62.8
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 6.6e-43 179.9 215 64.7
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 8.6e-43 179.5 218 65.6
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.1e-42 179.1 222 59.9
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.5e-42 178.7 216 59.3
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.5e-42 177.9 226 63.3
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 3.3e-42 177.6 223 64.1
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 4.3e-42 177.2 215 65.1
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.3e-42 177.2 220 62.3
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 7.3e-42 176.4 228 61.4
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 9.5e-42 176.0 220 61.8
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.5e-42 176.0 220 61.8
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.6e-41 175.3 226 62.4
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.1e-41 174.9 218 63.8
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.1e-41 174.9 228 62.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.8e-41 174.5 224 58.9
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.6e-41 174.1 219 62.1
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 3.6e-41 174.1 223 62.8
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 8.0e-41 172.9 228 58.3
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 2.3e-40 171.4 227 55.1
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 6.8e-40 169.9 227 60.4
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 6.8e-40 169.9 227 59.9
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.2e-39 169.1 227 60.4
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.5e-39 168.7 229 60.3
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 2.0e-39 168.3 218 64.2
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.0e-39 168.3 229 61.6
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.0e-39 168.3 220 61.4
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 4.4e-39 167.2 229 59.4
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 5.8e-39 166.8 226 61.9
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 7.5e-39 166.4 214 64.5
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 1.3e-38 165.6 229 62.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.3e-38 165.6 329 46.2
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.3e-38 165.6 228 61.0
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 1.3e-38 165.6 227 58.6
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.3e-38 165.6 229 58.1
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.9e-38 164.5 329 46.2
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 3.7e-38 164.1 227 60.4
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 3.7e-38 164.1 229 59.8
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 6.4e-38 163.3 224 61.6
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.1e-37 162.5 222 61.3
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.9e-37 161.8 228 59.2
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 5.4e-37 160.2 226 59.3
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 7.0e-37 159.8 227 59.9
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.0e-36 158.3 227 59.5
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 4.6e-36 157.1 227 59.5
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 4.6e-36 157.1 227 59.5
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 7.8e-36 156.4 230 58.3
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 1.3e-35 155.6 221 61.5
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.3e-35 154.8 227 59.0
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.3e-35 154.8 227 59.0
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 8.6e-35 152.9 224 57.6
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 8.6e-35 152.9 222 58.1
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.5e-34 152.1 227 58.6
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.9e-34 151.8 228 57.0
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.2e-33 149.1 229 42.8
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.3e-32 144.8 221 58.4
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 1.1e-29 136.0 206 57.8
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.7e-27 128.6 219 59.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 3.9e-27 127.5 220 55.9
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.5e-26 125.6 221 53.8
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.9e-26 125.2 510 36.3
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 3.7e-22 110.9 110 51.8
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 6.0e-20 103.6 245 44.9
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.6e-17 95.5 198 52.5
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 2.1e-17 95.1 101 48.5
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.6e-15 88.2 226 49.6
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 3.8e-14 84.3 69 59.4
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.2e-12 79.3 70 58.6
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 6.0e-12 77.0 61 63.9
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 6.0e-12 77.0 61 63.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.5e-10 72.4 70 48.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 7.3e-10 70.1 226 28.8
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 2.1e-09 68.6 163 30.1
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 3.6e-09 67.8 226 31.0
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.1e-08 66.2 142 33.8
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 7.6e-07 60.1 43 60.5
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.9e-07 59.7 43 62.8
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.9e-07 59.7 57 50.9
arahy.Tifrunner.gnm1.ann1.1MD03I Arachis hypogaea HOM05D006707 ORTHO05D008243 4.9e-06 57.4 59 50.8


User provided reference genes

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