Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 4.8e-238 827.4 408 100.0
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.5e-231 805.8 408 96.1
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.0e-231 805.4 408 96.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 5.7e-231 803.9 409 96.8
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.9e-228 793.9 408 94.1
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 3.8e-227 791.2 408 93.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.1e-226 789.6 408 93.1
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.9e-226 788.9 408 93.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 3.0e-224 781.6 406 93.6
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 5.2e-224 780.8 406 93.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.8e-222 775.0 408 91.9
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 3.7e-222 774.6 408 92.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 5.3e-221 770.8 408 91.4
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.3e-219 766.1 408 89.7
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.3e-219 766.1 408 90.0
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.2e-219 765.4 408 91.4
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.2e-219 765.4 408 89.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 6.5e-219 763.8 408 89.2
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 8.5e-219 763.5 408 89.5
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.1e-218 763.1 408 89.2
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.5e-218 762.7 408 89.7
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.2
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.5e-218 761.9 408 90.7
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 90.0
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.5e-218 760.8 408 88.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-217 758.8 408 89.0
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-217 758.4 408 89.2
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 4.7e-217 757.7 408 88.7
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 8.0e-217 756.9 404 89.1
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 89.2
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.0e-216 756.5 406 89.4
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.8e-216 755.7 408 88.7
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 88.9
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 87.7
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 2.3e-216 755.4 407 87.0
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 88.7
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 88.9
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 87.9
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 87.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.2e-216 754.2 406 88.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.2e-216 754.2 406 88.7
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 8.8e-216 753.4 406 89.7
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.2e-215 753.1 406 88.7
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.2e-215 753.1 406 88.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.2e-215 753.1 405 88.9
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.5e-215 752.7 406 88.4
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.5e-215 752.7 407 88.7
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 87.4
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 2.6e-215 751.9 408 88.7
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 4.4e-215 751.1 398 91.2
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 5.7e-215 750.7 409 88.5
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 87.4
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 88.7
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 87.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 3.7e-214 748.0 408 87.3
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.8e-214 747.7 406 88.2
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.1e-213 746.5 406 87.2
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 87.8
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 406 86.5
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.1e-213 745.0 408 87.5
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 7.0e-213 743.8 421 85.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.0
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-212 743.0 409 87.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.6e-212 742.7 409 87.3
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 86.9
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.6e-212 742.7 409 87.5
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 87.5
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-212 742.3 406 85.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.7e-212 741.9 406 86.7
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.7e-212 741.9 407 87.0
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 87.0
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 3.5e-212 741.5 407 87.0
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 87.4
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 5.9e-212 740.7 410 87.3
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 87.5
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.7e-212 740.3 422 84.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 86.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 86.6
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.9e-211 738.4 406 86.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 86.6
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.8e-211 738.0 450 81.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 6.5e-211 737.3 409 87.0
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 6.5e-211 737.3 406 86.0
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 8.5e-211 736.9 408 88.0
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 9.4e-210 733.4 407 86.5
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.1e-209 732.3 406 85.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.1e-209 730.7 406 85.5
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 8.0e-209 730.3 410 86.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 8.0e-209 730.3 410 86.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 8.0e-209 730.3 410 86.3
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.0e-208 729.9 406 85.5
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.0e-208 729.9 408 85.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 2.3e-208 728.8 410 86.1
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.2e-207 726.5 409 84.8
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.2e-207 726.5 406 83.7
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.5e-207 726.1 406 84.2
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.5e-207 726.1 408 85.0
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.4e-207 724.9 452 79.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.5e-207 723.8 433 81.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.7e-206 722.6 408 83.6
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.2e-206 722.2 408 85.3
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 2.8e-206 721.8 409 83.9
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 4.8e-206 721.1 473 75.9
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 8.3e-206 720.3 406 84.2
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.4e-205 719.5 408 83.3
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.7e-204 715.3 407 82.8
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 5.9e-204 714.1 387 88.1
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.3e-203 713.0 383 89.3
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.8e-203 711.4 379 90.2
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.1e-202 709.9 407 81.8
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.5e-199 699.5 382 87.2
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 5.7e-199 697.6 517 69.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 2.8e-198 695.3 449 75.1
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-196 689.5 410 82.9
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 7.8e-196 687.2 410 80.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.4e-192 676.4 417 78.9
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 9.8e-191 670.2 356 89.3
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.9e-190 668.7 358 88.5
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 3.7e-190 668.3 388 81.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.3e-187 659.8 358 88.0
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.3e-186 655.2 408 78.7
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 3.3e-186 655.2 402 77.6
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.1e-185 652.5 409 75.1
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.5e-175 619.8 412 71.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.7e-174 616.3 410 71.2
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 2.2e-174 615.9 406 73.6
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.1e-171 604.7 405 70.4
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.8e-169 599.0 317 90.5
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.7e-164 582.4 377 73.5
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.0e-155 553.9 388 71.6
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-154 550.4 409 69.4
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.0e-147 525.8 325 79.4
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 3.7e-145 518.8 400 63.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 9.3e-141 504.2 310 80.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.1e-128 462.6 245 89.4
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.2e-126 456.4 368 61.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.6e-124 448.7 255 83.9
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 6.3e-121 438.3 385 57.4
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.5e-119 433.7 227 92.1
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.6e-119 433.0 238 87.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.1e-106 391.0 239 80.3
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 2.3e-99 366.7 197 87.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 6.3e-81 305.4 419 42.2
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 8.3e-73 278.5 390 43.3
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.1e-72 278.1 183 74.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 3.1e-67 260.0 180 69.4
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 5.2e-59 232.6 141 78.0
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 8.9e-59 231.9 140 78.6
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 8.3e-57 225.3 124 83.9
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 9.3e-48 195.3 130 73.8
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 8.2e-20 102.4 128 46.1
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.1e-19 100.5 58 79.3


User provided reference genes

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