Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 5.2e-137 491.1 258 100.0
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 2.3e-116 422.5 216 91.2
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 9.5e-115 417.2 213 91.5
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 2.8e-114 415.6 258 80.6
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 6.1e-114 414.5 255 78.0
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 4.0e-113 411.8 259 77.2
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 8.9e-113 410.6 212 90.1
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 1.5e-112 409.8 213 89.7
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 1.8e-110 402.9 260 79.6
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 3.2e-110 402.1 260 78.5
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 2.0e-109 399.4 259 74.9
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 2.9e-108 395.6 216 85.2
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 3.3e-107 392.1 259 74.1
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 5.6e-107 391.3 213 84.5
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 2.1e-106 389.4 213 83.1
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 2.8e-106 389.0 213 84.5
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 3.6e-106 388.7 216 82.4
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 4.7e-106 388.3 264 71.6
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 4.7e-106 388.3 258 72.1
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 4.7e-106 388.3 213 84.5
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 6.2e-106 387.9 213 84.5
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 8.0e-106 387.5 213 84.5
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 1.8e-105 386.3 213 83.6
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 1.8e-105 386.3 218 82.1
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.8e-105 386.3 215 82.8
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 1.8e-105 386.3 258 72.1
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 3.1e-105 385.6 213 84.0
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 3.1e-105 385.6 260 72.7
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 4.0e-105 385.2 213 83.6
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 4.0e-105 385.2 213 82.6
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 8.9e-105 384.0 216 82.9
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 1.5e-104 383.3 216 81.9
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 2.0e-104 382.9 216 81.5
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 2.6e-104 382.5 254 72.4
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 3.4e-104 382.1 259 72.2
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 3.4e-104 382.1 220 82.3
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 7.5e-104 380.9 216 82.4
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 7.5e-104 380.9 216 82.4
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 9.8e-104 380.6 216 82.4
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 2.2e-103 379.4 213 82.6
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 6.4e-103 377.9 258 71.3
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 6.4e-103 377.9 258 71.7
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 1.1e-102 377.1 213 82.6
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 1.4e-102 376.7 217 81.1
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 2.4e-102 375.9 213 80.8
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 2.4e-102 375.9 258 70.9
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 4.1e-102 375.2 258 70.5
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 4.1e-102 375.2 213 82.2
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 1.6e-101 373.2 220 78.2
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 2.0e-101 372.9 220 77.7
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 3.5e-101 372.1 216 80.1
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 3.5e-101 372.1 212 81.1
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 4.6e-101 371.7 212 81.1
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 4.6e-101 371.7 213 80.3
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 6.0e-101 371.3 258 70.2
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 6.0e-101 371.3 213 79.8
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 1.7e-100 369.8 214 79.9
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 1.7e-100 369.8 213 78.9
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 3.0e-100 369.0 213 79.8
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 3.9e-100 368.6 213 79.3
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 3.9e-100 368.6 212 80.2
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 8.6e-100 367.5 258 67.4
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 8.6e-100 367.5 303 63.4
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 1.5e-99 366.7 229 76.4
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 3.3e-99 365.5 215 78.6
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 3.3e-99 365.5 218 77.5
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 4.3e-99 365.2 212 79.2
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 5.6e-99 364.8 218 79.4
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 7.3e-99 364.4 212 79.7
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 7.3e-99 364.4 213 79.3
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 1.2e-98 363.6 212 79.7
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 2.1e-98 362.8 212 79.2
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 3.6e-98 362.1 215 78.6
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 3.6e-98 362.1 257 69.6
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 3.6e-98 362.1 216 76.9
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 4.7e-98 361.7 219 77.2
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 6.2e-98 361.3 213 78.9
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 8.1e-98 360.9 212 78.8
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 1.4e-97 360.1 221 76.0
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 1.4e-97 360.1 212 78.8
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 1.4e-97 360.1 210 79.5
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 3.1e-97 359.0 212 77.4
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 8.9e-97 357.5 213 77.0
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 1.2e-96 357.1 260 70.8
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 5.8e-96 354.8 213 76.1
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 7.5e-96 354.4 215 75.8
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 1.7e-95 353.2 216 74.5
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 2.9e-95 352.4 212 77.4
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 6.4e-95 351.3 224 74.6
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.1e-94 350.5 211 73.9
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 1.1e-94 350.5 211 74.9
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 5.4e-94 348.2 213 76.1
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 4.6e-93 345.1 211 74.9
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-91 339.0 226 70.8
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 4.7e-90 335.1 300 57.7
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 2.3e-89 332.8 212 72.6
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 2.0e-88 329.7 215 71.2
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 5.8e-88 328.2 212 72.6
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 8.4e-87 324.3 218 67.4
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 1.9e-86 323.2 212 71.2
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 3.2e-86 322.4 212 69.8
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 2.1e-82 309.7 220 70.0
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 8.9e-81 304.3 204 67.6
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 1.7e-76 290.0 147 91.2
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 4.8e-74 282.0 211 59.7
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 4.8e-74 282.0 168 77.4
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 8.1e-74 281.2 269 55.0
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 1.7e-71 273.5 195 64.6
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 1.7e-71 273.5 154 84.4
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 8.4e-71 271.2 212 60.4
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 1.9e-62 243.4 151 78.1
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 2.7e-61 239.6 176 65.3
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 3.5e-61 239.2 214 51.4
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 1.0e-60 237.7 208 53.8
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.9e-54 216.9 150 72.0
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 3.8e-47 192.6 152 66.4
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 6.1e-45 185.3 117 75.2
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 7.9e-45 184.9 140 64.3
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 3.9e-44 182.6 108 75.9
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 1.3e-39 167.5 213 46.9
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 6.1e-29 132.1 221 32.1
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 1.5e-27 127.5 206 35.9
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 2.6e-27 126.7 149 47.0
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 1.4e-25 120.9 202 31.7
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 2.4e-25 120.2 66 80.3
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 4.5e-24 115.9 208 32.7
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 1.0e-23 114.8 68 79.4
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 1.3e-23 114.4 163 44.2
Cfa027170 Carpinus fangiana HOM05D005528 ORTHO05D007066 2.9e-23 113.2 216 32.4
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 3.8e-23 112.8 66 74.2
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.6e-21 107.5 64 71.9
Ah.09g225650 Amaranthus hybridus HOM05D001262 ORTHO05D001114 1.6e-21 107.5 223 30.5
Hund09152 Selenicereus undatus HOM05D001262 ORTHO05D001114 1.0e-20 104.8 222 31.1
AUR62011076 Chenopodium quinoa HOM05D001262 ORTHO05D001114 4.0e-20 102.8 224 31.7
AUR62033458 Chenopodium quinoa HOM05D001262 ORTHO05D001114 6.7e-20 102.1 224 31.7
Phvul.009G198700 Phaseolus vulgaris HOM05D001262 ORTHO05D001114 1.1e-19 101.3 226 31.0
Glyma.04G149900 Glycine max HOM05D001262 ORTHO05D001114 2.6e-19 100.1 226 31.0
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 5.7e-19 99.0 58 74.1
EL10Ac8g18599 Beta vulgaris HOM05D001262 ORTHO05D001114 7.5e-19 98.6 262 26.7
Lalb_Chr08g0234851 Lupinus albus HOM05D001262 ORTHO05D001114 9.7e-19 98.2 226 29.6
Lalb_Chr23g0275281 Lupinus albus HOM05D001262 ORTHO05D001114 1.7e-18 97.4 226 30.5
MCO13G631 Micromonas commoda HOM05D005528 ORTHO05D007066 1.7e-18 97.4 213 29.6
SMO347G0182 Selaginella moellendorffii HOM05D001262 ORTHO05D001114 1.7e-18 97.4 223 32.3
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 2.8e-18 96.7 60 78.3
Cfa002014 Carpinus fangiana HOM05D001262 ORTHO05D001114 3.7e-18 96.3 223 30.9
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 3.7e-18 96.3 200 32.0
CSS0037505 Camellia sinensis var. sinensis HOM05D001262 ORTHO05D001114 6.3e-18 95.5 223 29.1
DCAR_009207 Daucus carota HOM05D001262 ORTHO05D001114 6.3e-18 95.5 224 30.4
MELO3C011237.2 Cucumis melo HOM05D001262 ORTHO05D001114 8.2e-18 95.1 221 31.7
Potri.018G070700 Populus trichocarpa HOM05D001262 ORTHO05D001114 1.1e-17 94.7 225 30.2
Ca_27311_v3 Cicer arietinum L. HOM05D001262 ORTHO05D001114 1.4e-17 94.4 225 29.3
SGA_v2.0_scaffold37G14788 Striga asiatica HOM05D001262 ORTHO05D001114 1.4e-17 94.4 226 31.9
BcaB05g22876 Brassica carinata HOM05D001262 ORTHO05D001114 1.8e-17 94.0 222 31.5
Os04g0174900 Oryza sativa ssp. japonica HOM05D001262 ORTHO05D001114 1.8e-17 94.0 225 29.8
Sabra18G0031900 Salix brachista HOM05D001262 ORTHO05D001114 1.8e-17 94.0 226 31.9
HanXRQChr06g0180221 Helianthus annuus HOM05D001262 ORTHO05D001114 2.4e-17 93.6 225 30.7
TWI34G0483 Tripterygium wilfordii HOM05D001262 ORTHO05D001114 5.3e-17 92.4 226 31.0
Actinidia40446 Actinidia chinensis HOM05D001262 ORTHO05D001114 7.0e-17 92.0 223 29.1
Sabra18G0061800 Salix brachista HOM05D001262 ORTHO05D001114 7.0e-17 92.0 225 29.3
Prupe.7G238500 Prunus persica HOM05D001262 ORTHO05D001114 1.2e-16 91.3 226 29.2
AUR62024884 Chenopodium quinoa HOM05D001262 ORTHO05D001114 1.6e-16 90.9 224 28.1
Zm00001eb345070 Zea mays HOM05D001262 ORTHO05D001114 1.6e-16 90.9 225 29.8
AUR62030663 Chenopodium quinoa HOM05D001262 ORTHO05D001114 2.0e-16 90.5 224 27.7
Zm00001eb122690 Zea mays HOM05D001262 ORTHO05D001114 3.5e-16 89.7 229 30.1
Sp6g24350 Schrenkiella parvula HOM05D001262 ORTHO05D001114 4.5e-16 89.4 222 30.6
Os04g0669700 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.3e-15 87.8 64 57.8
Os01g0175000 Oryza sativa ssp. japonica HOM05D001262 ORTHO05D001114 3.8e-15 86.3 213 30.0
MD10G1329700 Malus domestica HOM05D005528 ORTHO05D007066 5.0e-15 85.9 138 39.1
DCAR_003042 Daucus carota HOM05D001262 ORTHO05D001114 1.5e-14 84.3 223 29.6
HanXRQChr13g0402721 Helianthus annuus HOM05D001262 ORTHO05D001114 1.5e-14 84.3 223 28.3
Cfa025413 Carpinus fangiana HOM05D001262 ORTHO05D017802 8.8e-12 75.1 155 31.0
Glyma.07G264950 Glycine max HOM05D005528 ORTHO05D007066 1.2e-11 74.7 39 79.5
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 2.0e-11 73.9 48 72.9
Actinidia22010 Actinidia chinensis HOM05D001262 ORTHO05D001114 4.4e-11 72.8 211 25.6
VMungo1309G3035 Vigna mungo HOM05D001262 ORTHO05D001114 4.1e-09 66.2 198 27.3
Haze_16507 Corylus avellana HOM05D001262 ORTHO05D001114 9.1e-09 65.1 258 26.0
AT1G18773 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 4.5e-08 62.8 52 57.7
QL03p008473 Quercus lobata HOM05D005528 ORTHO05D007066 5.9e-08 62.4 40 62.5
SMO223G0010 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 2.5e-06 57.0 224 25.9


User provided reference genes

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