Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.9e-182 641.0 312 100.0
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 4.7e-161 571.2 312 89.1
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 4.9e-158 561.2 312 87.2
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 4.4e-151 538.1 309 85.4
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 6.4e-150 534.3 310 82.3
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.4e-144 516.5 310 81.3
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 5.3e-136 488.0 290 80.3
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 4.3e-130 468.4 309 71.8
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 7.4e-130 467.6 309 71.5
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.2e-127 460.3 305 70.8
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.5e-127 459.9 308 72.1
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.4e-125 453.4 307 71.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 2.5e-125 452.6 304 67.4
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 2.7e-124 449.1 336 66.1
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.6e-124 448.7 307 70.4
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.9e-123 445.3 312 70.5
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.1e-123 444.9 319 68.7
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 6.7e-123 444.5 306 68.6
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-122 443.7 319 68.3
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 2.2e-121 439.5 317 65.3
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.2e-121 439.5 316 67.4
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 8.2e-121 437.6 308 66.6
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.8e-120 436.4 305 66.9
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 2.4e-120 436.0 307 66.4
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.1e-120 435.3 318 67.0
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 5.3e-120 434.9 312 66.0
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 5.3e-120 434.9 311 65.0
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.5e-119 433.3 306 67.0
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 2.0e-119 433.0 303 67.0
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 5.9e-119 431.4 297 67.7
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.7e-118 429.9 305 68.2
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-116 421.8 308 64.6
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 4.6e-116 421.8 303 65.3
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 6.1e-116 421.4 302 67.9
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.9e-115 418.7 305 62.0
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.1e-115 418.3 308 64.3
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.5e-114 416.8 308 63.6
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 5.7e-114 414.8 309 64.1
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 1.7e-113 413.3 311 63.0
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 2.2e-113 412.9 304 64.5
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 2.2e-113 412.9 301 64.5
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.8e-113 412.5 302 65.9
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 6.3e-113 411.4 312 65.4
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 6.3e-113 411.4 315 63.2
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.8e-112 409.8 304 63.8
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.2e-111 407.1 304 63.8
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.0e-111 406.4 303 65.3
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.0e-111 406.4 303 65.3
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.0e-111 406.4 303 65.3
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 2.0e-111 406.4 303 65.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 2.0e-111 406.4 290 66.6
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 2.6e-111 406.0 309 62.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 3.4e-111 405.6 304 60.9
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 4.5e-111 405.2 306 64.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 4.5e-111 405.2 304 60.9
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 4.5e-111 405.2 306 64.4
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.8e-110 402.1 291 64.9
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.9e-109 399.8 302 64.2
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 7.2e-109 397.9 277 67.5
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.1e-108 396.4 303 65.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.8e-107 393.3 295 64.7
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 3.0e-107 392.5 307 61.9
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 3.9e-107 392.1 307 63.5
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 5.2e-107 391.7 292 65.4
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 8.8e-107 391.0 305 60.3
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 3.3e-106 389.0 333 59.2
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 3.3e-106 389.0 333 59.2
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 9.7e-106 387.5 291 62.5
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.7e-105 386.7 332 59.0
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 4.1e-104 382.1 291 62.2
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 4.5e-103 378.6 309 59.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.9e-102 375.9 293 61.1
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 3.8e-102 375.6 318 59.4
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 2.5e-101 372.9 304 58.2
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.2e-101 372.5 310 58.7
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 7.2e-101 371.3 293 61.8
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.2e-98 364.0 314 57.3
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.6e-95 353.6 241 69.7
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 7.7e-95 351.3 384 49.2
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.7e-94 350.1 304 56.2
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.3e-91 339.7 244 66.0
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 8.8e-91 337.8 284 59.5
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 5.7e-90 335.1 308 57.1
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 4.1e-88 328.9 245 66.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 2.0e-87 326.6 209 72.2
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 7.7e-87 324.7 325 53.2
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 1.2e-84 317.4 262 61.8
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.8e-83 313.5 222 64.0
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.4e-80 302.0 267 56.9
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.6e-79 300.4 294 52.4
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.9e-78 296.2 300 50.3
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 3.3e-77 292.7 280 53.9
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.2e-74 284.3 308 52.3
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 9.2e-72 274.6 217 61.8
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.3e-67 260.0 240 54.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 4.0e-67 259.2 294 46.6
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.0e-66 256.9 209 58.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.9e-64 250.4 230 54.3
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.3e-62 244.2 382 39.3
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.3e-61 239.2 198 60.6
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.7e-60 235.7 190 61.1
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.3e-57 227.6 187 57.8
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.2e-57 226.9 187 57.2
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-57 225.7 187 57.8
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-57 225.7 187 57.2
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.3e-57 224.9 187 57.2
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.2e-55 221.1 187 56.7
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.2e-55 221.1 190 56.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-51 207.6 187 55.1
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 9.2e-48 194.9 284 41.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.8e-47 191.8 187 51.3
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.4e-43 180.3 109 73.4
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 4.0e-43 179.5 300 38.0
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.4e-42 176.0 103 76.7
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.9e-42 174.9 103 75.7
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.2e-40 169.9 197 46.7
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 5.1e-38 162.5 188 44.7
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 8.7e-38 161.8 103 72.8
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-36 156.8 118 64.4
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.1e-35 154.8 198 45.5
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.9e-35 152.1 118 62.7
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 5.8e-34 149.1 276 34.4
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.6e-34 148.7 109 67.0
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 2.9e-33 146.7 126 58.7
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 3.3e-29 133.3 112 57.1
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 4.5e-26 122.9 295 32.5
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.0e-22 111.7 65 72.3
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 3.9e-22 109.8 77 71.4
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 3.9e-22 109.8 77 71.4
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 1.8e-14 84.3 45 75.6
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.6e-07 60.1 96 38.5


User provided reference genes

Program Settings