Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36771 Trifolium pratense HOM05D002502 ORTHO05D017711 2.6e-72 275.4 152 100.0
Medtr2g082240 Medicago truncatula HOM05D002502 ORTHO05D017711 7.2e-30 134.4 114 69.3
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 2.7e-29 132.5 117 72.6
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 6.1e-29 131.3 117 71.8
Ca_01773_v3 Cicer arietinum L. HOM05D002502 ORTHO05D017711 5.7e-27 124.8 135 62.2
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 5.7e-27 124.8 116 67.2
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 2.2e-26 122.9 110 69.1
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 8.3e-26 120.9 117 68.4
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 8.3e-26 120.9 122 66.4
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 1.1e-25 120.6 122 65.6
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 7.7e-24 114.4 116 63.8
Lj5g0005383 Lotus japonicus HOM05D002502 ORTHO05D017711 1.3e-23 113.6 161 54.0
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 3.8e-23 112.1 117 63.2
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 1.1e-22 110.5 116 62.1
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 4.7e-21 105.1 126 55.6
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 4.7e-21 105.1 124 57.3
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 6.1e-21 104.8 116 57.8
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 8.0e-21 104.4 116 57.8
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 4.0e-20 102.1 116 58.6
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.2e-19 100.5 95 65.3
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 1.2e-19 100.5 95 65.3
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 2.0e-19 99.8 116 55.2
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 3.4e-19 99.0 67 80.6
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 5.7e-19 98.2 67 77.6
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 9.8e-19 97.4 67 76.1
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 1.3e-18 97.1 116 52.6
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 2.2e-18 96.3 123 54.5
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 2.2e-18 96.3 111 57.7
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 2.2e-18 96.3 67 76.1
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 2.2e-18 96.3 129 52.7
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 2.2e-18 96.3 62 82.3
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 2.8e-18 95.9 107 60.7
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 2.8e-18 95.9 67 76.1
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 3.7e-18 95.5 130 57.7
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 4.9e-18 95.1 67 77.6
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 4.9e-18 95.1 67 77.6
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 4.9e-18 95.1 67 77.6
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 4.9e-18 95.1 62 82.3
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 4.9e-18 95.1 109 58.7
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 8.3e-18 94.4 127 50.4
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 8.3e-18 94.4 67 76.1
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.1e-17 94.0 118 55.9
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.4e-17 93.6 67 74.6
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 1.4e-17 93.6 67 71.6
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 1.4e-17 93.6 62 80.6
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.4e-17 93.6 67 76.1
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.4e-17 93.6 122 54.9
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 1.4e-17 93.6 114 55.3
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 1.8e-17 93.2 123 51.2
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 1.8e-17 93.2 110 54.5
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 1.8e-17 93.2 67 73.1
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 2.4e-17 92.8 67 73.1
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 2.4e-17 92.8 120 55.8
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 2.4e-17 92.8 62 79.0
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 3.1e-17 92.4 67 74.6
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 3.1e-17 92.4 67 74.6
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 3.1e-17 92.4 67 74.6
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 3.1e-17 92.4 62 77.4
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 3.1e-17 92.4 62 77.4
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 3.1e-17 92.4 67 70.1
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 3.1e-17 92.4 67 73.1
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 3.1e-17 92.4 67 73.1
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 3.1e-17 92.4 116 56.0
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 3.1e-17 92.4 66 74.2
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 3.1e-17 92.4 66 74.2
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 4.1e-17 92.0 67 74.6
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 4.1e-17 92.0 67 73.1
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 4.1e-17 92.0 66 74.2
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 5.4e-17 91.7 67 70.1
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 5.4e-17 91.7 120 55.0
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 5.4e-17 91.7 120 52.5
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 7.0e-17 91.3 71 70.4
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 7.0e-17 91.3 112 53.6
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 7.0e-17 91.3 87 69.0
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 9.2e-17 90.9 123 52.0
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 9.2e-17 90.9 67 71.6
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 9.2e-17 90.9 121 54.5
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 9.2e-17 90.9 79 67.1
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 9.2e-17 90.9 79 67.1
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 9.2e-17 90.9 66 71.2
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.2e-16 90.5 62 77.4
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 1.6e-16 90.1 67 71.6
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 2.0e-16 89.7 62 75.8
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 2.0e-16 89.7 62 75.8
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 2.7e-16 89.4 112 54.5
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.7e-16 89.4 61 77.0
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 2.7e-16 89.4 126 49.2
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 2.7e-16 89.4 98 57.1
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 2.7e-16 89.4 112 54.5
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 3.5e-16 89.0 132 50.0
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 4.5e-16 88.6 123 52.0
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 4.5e-16 88.6 120 51.7
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 4.5e-16 88.6 128 49.2
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 4.5e-16 88.6 67 71.6
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 4.5e-16 88.6 62 74.2
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 5.9e-16 88.2 67 71.6
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 5.9e-16 88.2 67 71.6
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 5.9e-16 88.2 66 71.2
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 5.9e-16 88.2 122 51.6
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 7.8e-16 87.8 102 55.9
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 7.8e-16 87.8 99 53.5
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 7.8e-16 87.8 126 48.4
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 7.8e-16 87.8 127 51.2
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 1.0e-15 87.4 120 51.7
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 1.0e-15 87.4 120 51.7
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 1.0e-15 87.4 67 70.1
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 1.0e-15 87.4 123 52.0
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 1.3e-15 87.0 66 68.2
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 1.3e-15 87.0 118 55.9
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 1.3e-15 87.0 116 50.9
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 2.3e-15 86.3 104 48.1
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 2.3e-15 86.3 120 50.8
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 2.3e-15 86.3 98 56.1
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 2.9e-15 85.9 66 69.7
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 2.9e-15 85.9 67 70.1
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 2.9e-15 85.9 129 45.0
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 3.8e-15 85.5 62 72.6
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 3.8e-15 85.5 98 56.1
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 5.0e-15 85.1 97 49.5
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 5.0e-15 85.1 67 70.1
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 5.0e-15 85.1 124 50.8
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 5.0e-15 85.1 124 50.8
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 5.0e-15 85.1 66 68.2
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 5.0e-15 85.1 97 49.5
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 6.6e-15 84.7 62 71.0
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 6.6e-15 84.7 62 71.0
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 6.6e-15 84.7 66 65.2
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.6e-15 84.7 62 71.0
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 8.6e-15 84.3 71 63.4
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 8.6e-15 84.3 71 63.4
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 8.6e-15 84.3 71 63.4
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 8.6e-15 84.3 123 48.0
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 8.6e-15 84.3 71 63.4
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 8.6e-15 84.3 61 73.8
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.1e-14 84.0 97 49.5
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 1.5e-14 83.6 66 69.7
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 1.9e-14 83.2 66 65.2
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.9e-14 83.2 62 71.0
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 1.9e-14 83.2 137 45.3
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 2.5e-14 82.8 66 63.6
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 2.5e-14 82.8 66 63.6
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 2.5e-14 82.8 66 63.6
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 2.5e-14 82.8 66 63.6
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 2.5e-14 82.8 66 63.6
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 2.5e-14 82.8 69 65.2
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 2.5e-14 82.8 62 72.6
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 3.3e-14 82.4 80 56.2
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.3e-14 82.4 71 62.0
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 4.3e-14 82.0 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 5.6e-14 81.6 116 47.4
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 7.3e-14 81.3 62 71.0
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 9.5e-14 80.9 67 64.2
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 9.5e-14 80.9 123 47.2
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 1.2e-13 80.5 62 69.4
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 1.6e-13 80.1 62 71.0
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 1.6e-13 80.1 67 64.2
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 2.1e-13 79.7 62 67.7
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.8e-13 79.3 60 70.0
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 2.8e-13 79.3 123 45.5
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 2.8e-13 79.3 130 47.7
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.6e-13 79.0 113 52.2
PGSC0003DMG400030186 Solanum tuberosum HOM05D002502 ORTHO05D017711 3.6e-13 79.0 67 64.2
BraA06t23215Z Brassica rapa HOM05D002502 ORTHO05D017711 4.7e-13 78.6 111 45.9
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 4.7e-13 78.6 85 58.8
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 6.1e-13 78.2 128 46.9
GSVIVG01034588001 Vitis vinifera HOM05D002502 ORTHO05D003592 1.0e-12 77.4 65 69.2
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 1.4e-12 77.0 122 45.9
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 1.4e-12 77.0 93 49.5
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 1.8e-12 76.6 117 47.0
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 1.8e-12 76.6 58 67.2
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 8.9e-12 74.3 58 69.0
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 8.9e-12 74.3 166 38.0
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.4e-10 68.2 147 36.7
MCO16G373 Micromonas commoda HOM05D002502 ORTHO05D003592 6.4e-10 68.2 59 59.3
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 1.1e-09 67.4 126 44.4
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 7.0e-09 64.7 122 38.5
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 1.6e-08 63.5 118 44.1
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 2.7e-08 62.8 117 42.7
HPP92_002934 Vanilla planifolia HOM05D002502 ORTHO05D017711 2.7e-08 62.8 83 49.4
Cpa.g.c44337.1 Carica papaya HOM05D002502 ORTHO05D017711 4.6e-08 62.0 73 53.4
Lsat_1_v5_gn_1_11801 Lactuca sativa HOM05D002502 ORTHO05D017711 5.9e-08 61.6 78 44.9
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 7.8e-08 61.2 152 38.2
A06p00830 Brassica napus HOM05D001067 ORTHO05D000876 1.7e-07 60.1 56 55.4
BraSC277t45949Z Brassica rapa HOM05D001067 ORTHO05D000876 1.7e-07 60.1 56 55.4


User provided reference genes

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