Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 5.5e-62 240.7 117 100.0
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 7.0e-41 170.6 112 74.1
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.6e-40 169.5 111 70.3
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 3.8e-39 164.9 113 68.1
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 3.8e-39 164.9 112 67.9
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 3.8e-39 164.9 111 70.3
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 3.8e-39 164.9 112 68.8
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 4.2e-38 161.4 110 67.3
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 5.5e-38 161.0 113 68.1
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 2.1e-37 159.1 112 67.9
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 4.7e-37 157.9 98 77.6
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-35 153.3 112 63.4
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-35 153.3 112 63.4
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.2e-35 153.3 112 63.4
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 3.5e-32 141.7 112 58.0
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.3e-31 139.8 110 61.8
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 2.5e-30 135.6 115 56.5
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 5.6e-30 134.4 112 52.7
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 7.3e-30 134.0 115 51.3
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 9.5e-30 133.7 115 54.8
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 1.6e-29 132.9 112 52.7
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 2.1e-29 132.5 115 50.4
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 4.7e-29 131.3 112 54.5
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 8.0e-29 130.6 112 53.6
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 1.8e-28 129.4 115 53.9
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 1.8e-28 129.4 109 58.7
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 5.2e-28 127.9 112 54.5
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 6.8e-28 127.5 115 54.8
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 1.5e-27 126.3 114 49.1
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 2.0e-27 125.9 112 50.0
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 2.0e-27 125.9 112 50.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 2.6e-27 125.6 112 54.5
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 2.6e-27 125.6 115 54.8
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 3.4e-27 125.2 114 50.9
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 4.4e-27 124.8 115 54.8
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 5.8e-27 124.4 112 54.5
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 9.8e-27 123.6 115 53.0
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.9e-26 122.1 115 52.2
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 3.7e-26 121.7 108 51.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 4.9e-26 121.3 112 56.2
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 4.9e-26 121.3 108 50.9
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.4e-26 120.9 112 50.9
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 6.4e-26 120.9 109 55.0
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.1e-25 120.2 113 49.6
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 1.4e-25 119.8 109 52.3
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 1.4e-25 119.8 112 50.0
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.2e-25 118.6 114 50.0
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.1e-25 118.2 115 50.4
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 7.0e-25 117.5 109 51.4
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 7.0e-25 117.5 109 52.3
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 1.6e-24 116.3 115 52.2
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.0e-24 115.9 112 49.1
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 2.0e-24 115.9 112 50.0
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 2.7e-24 115.5 115 47.0
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 2.7e-24 115.5 115 51.3
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.7e-24 115.5 115 50.4
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 2.7e-24 115.5 114 48.2
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 3.5e-24 115.2 112 50.0
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 4.6e-24 114.8 114 50.0
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 7.8e-24 114.0 115 48.7
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 1.0e-23 113.6 112 46.4
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.0e-23 113.6 109 50.5
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.0e-23 113.6 112 48.2
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.3e-23 113.2 109 50.5
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.3e-23 113.2 115 48.7
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 3.0e-23 112.1 112 48.2
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 3.9e-23 111.7 109 49.5
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 5.0e-23 111.3 100 52.0
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.6e-23 110.5 97 51.5
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.5e-22 109.8 100 51.0
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.5e-22 109.8 114 42.1
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.9e-22 109.4 100 51.0
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 2.5e-22 109.0 112 49.1
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 3.3e-22 108.6 112 44.6
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.2e-21 106.7 104 52.9
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.6e-21 106.3 112 43.8
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.1e-21 105.9 112 42.0
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 2.1e-21 105.9 105 49.5
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 2.8e-21 105.5 115 41.7
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.8e-21 105.5 115 40.9
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 3.6e-21 105.1 112 47.3
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 3.6e-21 105.1 112 46.4
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.6e-21 105.1 89 57.3
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 4.7e-21 104.8 112 42.9
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 4.7e-21 104.8 112 42.9
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 6.2e-21 104.4 95 55.8
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 6.2e-21 104.4 112 45.5
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 8.0e-21 104.0 115 39.1
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 1.8e-20 102.8 112 42.9
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 2.3e-20 102.4 111 47.7
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 2.3e-20 102.4 114 43.0
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.3e-20 102.4 115 40.0
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 3.1e-20 102.1 112 43.8
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 4.0e-20 101.7 105 50.5
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 4.0e-20 101.7 115 40.9
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 4.0e-20 101.7 112 42.0
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 4.0e-20 101.7 115 44.3
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 6.8e-20 100.9 114 43.0
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 8.9e-20 100.5 114 39.5
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 1.5e-19 99.8 111 41.4
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.0e-19 99.4 115 39.1
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 2.6e-19 99.0 96 54.2
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 5.8e-19 97.8 94 53.2
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 4.9e-18 94.7 122 38.5
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 4.9e-18 94.7 122 38.5
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 6.4e-18 94.4 124 38.7
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.1e-17 93.6 112 41.1
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 1.1e-17 93.6 112 45.5
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.4e-17 93.2 105 41.9
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.9e-17 92.8 112 42.0
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 4.1e-17 91.7 112 42.9
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 9.2e-17 90.5 131 36.6
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 3.5e-16 88.6 132 35.6
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 7.8e-16 87.4 116 37.9
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 2.3e-15 85.9 112 41.1
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 5.1e-15 84.7 78 51.3
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 5.1e-15 84.7 73 54.8
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.1e-14 83.6 75 50.7
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 4.3e-14 81.6 103 43.7
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.5e-14 80.5 93 40.9
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 2.1e-13 79.3 73 53.4
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 2.8e-13 79.0 118 33.9
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 1.5e-11 73.2 79 41.8
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 1.5e-11 73.2 73 46.6
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 2.7e-08 62.4 72 44.4
arahy.Tifrunner.gnm1.ann1.4630L6 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.3e-07 59.3 59 52.5
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 1.5e-06 56.6 111 30.6
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 4.3e-06 55.1 54 57.4


User provided reference genes

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