Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 0.0e+00 1331.2 646 100.0
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 1.9e-220 769.6 752 57.2
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 2.3e-218 762.7 752 55.9
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.3e-208 730.3 750 54.1
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 2.2e-205 719.5 752 53.1
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 6.7e-202 708.0 748 52.1
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 2.0e-198 696.4 751 51.7
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 1.5e-196 690.3 749 51.7
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 1.6e-195 686.8 744 51.9
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 4.1e-191 672.2 750 49.9
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 5.3e-191 671.8 752 50.5
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.1e-188 664.1 752 49.1
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 1.6e-187 660.2 752 50.4
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 5.7e-185 651.7 750 48.8
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 9.8e-185 651.0 748 49.2
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 3.7e-184 649.0 746 49.1
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 2.9e-181 639.4 740 48.6
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 3.8e-181 639.0 754 48.1
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 5.0e-181 638.6 752 48.8
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 4.2e-180 635.6 749 48.5
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 3.7e-168 595.9 765 45.8
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 1.5e-161 573.9 715 46.2
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 6.4e-160 568.5 761 44.0
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 1.6e-158 563.9 760 43.6
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 1.7e-157 560.5 756 43.7
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 2.3e-157 560.1 760 43.6
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 1.1e-156 557.8 756 43.3
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 5.6e-156 555.4 756 43.5
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 9.5e-156 554.7 756 43.0
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 1.6e-155 553.9 758 42.9
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 6.2e-155 552.0 764 42.8
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 1.1e-154 551.2 742 43.4
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 1.5e-153 547.4 756 43.1
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.0e-153 547.0 760 42.8
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 2.0e-153 547.0 753 43.0
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 3.4e-153 546.2 758 43.1
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 4.4e-153 545.8 760 42.6
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 7.5e-153 545.0 758 42.5
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 3.7e-152 542.7 760 43.2
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 4.9e-152 542.3 760 42.4
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 8.3e-152 541.6 756 42.7
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 1.4e-151 540.8 757 42.5
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 1.9e-151 540.4 484 59.7
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 2.4e-151 540.0 745 42.8
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 5.4e-151 538.9 756 42.1
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 5.4e-151 538.9 753 42.5
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 5.4e-151 538.9 750 41.3
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 2.1e-150 537.0 757 42.3
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 2.1e-150 537.0 748 42.6
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 3.5e-150 536.2 748 42.8
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 6.0e-150 535.4 752 42.4
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 7.8e-150 535.0 749 41.5
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 2.3e-149 533.5 748 42.5
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 3.9e-149 532.7 745 42.3
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 4.3e-148 529.3 746 41.8
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 4.3e-148 529.3 750 42.3
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 7.3e-148 528.5 748 42.1
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 7.3e-148 528.5 753 41.8
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 1.6e-147 527.3 757 42.0
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 2.1e-147 526.9 755 41.6
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 2.8e-147 526.6 761 41.1
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 6.2e-147 525.4 751 41.9
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 1.8e-146 523.9 728 42.7
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 7.6e-145 518.5 748 41.6
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 2.2e-144 516.9 761 41.9
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.9e-144 516.5 752 41.5
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 1.1e-143 514.6 745 39.5
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 1.9e-143 513.8 731 41.9
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 5.4e-143 512.3 753 40.9
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 9.2e-143 511.5 727 40.7
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 2.7e-142 510.0 727 41.0
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 1.0e-141 508.1 753 40.5
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 1.3e-141 507.7 738 40.7
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 3.9e-141 506.1 713 41.4
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 6.6e-141 505.4 775 40.3
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 1.5e-140 504.2 738 40.4
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 1.9e-140 503.8 757 40.4
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 4.3e-140 502.7 702 41.7
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 5.6e-140 502.3 738 41.1
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 5.6e-140 502.3 713 41.1
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 1.2e-139 501.1 738 40.9
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 1.6e-139 500.7 736 39.9
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 2.1e-139 500.4 762 40.3
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 3.6e-139 499.6 738 40.4
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 4.7e-139 499.2 760 40.4
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 1.1e-138 498.0 740 40.3
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 1.4e-138 497.7 736 40.5
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 1.4e-138 497.7 738 39.7
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 1.4e-138 497.7 762 39.9
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 2.4e-138 496.9 734 40.7
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 2.4e-138 496.9 762 40.2
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 2.4e-138 496.9 754 40.5
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 2.0e-137 493.8 738 39.8
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 3.4e-137 493.0 756 40.1
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 9.9e-137 491.5 738 39.4
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 3.8e-136 489.6 748 41.6
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 6.4e-136 488.8 701 40.5
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 1.1e-135 488.0 761 39.8
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 7.3e-132 475.3 749 40.9
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 9.6e-132 474.9 771 39.0
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 1.3e-131 474.6 725 40.4
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 4.8e-131 472.6 741 39.5
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 5.8e-129 465.7 748 38.0
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 4.9e-128 462.6 731 37.9
C03p65460 Brassica napus HOM05D004718 ORTHO05D005838 5.4e-127 459.1 709 39.4
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 2.1e-126 457.2 788 36.8
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.3e-125 454.5 705 39.4
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 1.9e-124 450.7 736 38.0
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 1.5e-121 441.0 738 39.0
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 1.4e-119 434.5 863 34.0
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 9.3e-119 431.8 599 42.2
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.1e-116 424.9 710 39.0
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 3.1e-106 390.2 538 40.9
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 4.3e-100 369.8 522 42.1
Mapoly0015s0043 Marchantia polymorpha HOM05D004718 ORTHO05D005838 2.6e-97 360.5 815 31.9
Pp3c16_5610 Physcomitrium patens HOM05D004718 ORTHO05D005838 1.1e-95 355.1 761 33.0
AL8G22480 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 3.6e-94 350.1 578 37.5
BcaC01g02422 Brassica carinata HOM05D004718 ORTHO05D005838 1.4e-93 348.2 479 41.5
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 8.8e-93 345.5 490 41.4
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 1.2e-89 335.1 643 33.9
unitig_699.g19717 Utricularia gibba HOM05D004718 ORTHO05D005838 3.3e-84 317.0 525 37.7
SEGI_37293 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 1.0e-80 305.4 516 35.7
CBR_g19585 Chara braunii HOM05D004718 ORTHO05D005838 1.0e-72 278.9 890 26.0
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 3.2e-71 273.9 429 42.0
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 6.1e-62 243.0 325 40.0
TPR.G35198 Trifolium pratense HOM05D004718 ORTHO05D005838 6.8e-61 239.6 240 55.4
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 1.7e-59 235.0 362 39.0
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 2.8e-59 234.2 460 33.5
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 4.5e-57 226.9 315 41.3
Hma1.2p1_0147F.1_g065870 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 7.3e-55 219.5 325 38.2
Hma1.2p1_2965F.1_g330973 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 7.3e-55 219.5 325 38.2
PSO782G5635 Papaver somniferum HOM05D004718 ORTHO05D005838 7.3e-47 193.0 408 34.1
Cpa.g.sc42.63 Carica papaya HOM05D004718 ORTHO05D005838 5.2e-45 186.8 272 41.9
PRCOL_00003856 Prasinoderma coloniale HOM05D004718 ORTHO05D005838 1.2e-30 139.0 518 23.7
PGSC0003DMG401018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 4.6e-25 120.6 229 34.5
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 5.1e-24 117.1 185 40.0
BcaC01g02421 Brassica carinata HOM05D004718 ORTHO05D005838 4.3e-23 114.0 175 39.4
CARHR158610 Cardamine hirsuta HOM05D004718 ORTHO05D005838 9.6e-23 112.8 166 42.8
vmacro12746 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 5.4e-18 97.1 122 48.4
SEGI_05067 Sequoiadendron giganteum HOM05D004718 ORTHO05D005838 1.2e-17 95.9 178 35.4
FAN17G1117 Fragaria x ananassa HOM05D004718 ORTHO05D046641 6.2e-14 83.6 98 45.9
Cre01.g030450 Chlamydomonas reinhardtii HOM05D004718 ORTHO05D005838 1.1e-13 82.8 216 28.2
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 2.6e-12 78.2 167 32.3
TPR.G12064 Trifolium pratense HOM05D004718 ORTHO05D005838 1.7e-11 75.5 67 52.2
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.9e-11 74.7 78 44.9
HPP92_023162 Vanilla planifolia HOM05D004718 ORTHO05D005838 5.1e-08 63.9 55 50.9
TPR.G27547 Trifolium pratense HOM05D004718 ORTHO05D005838 8.7e-08 63.2 77 48.1
SEGI_25079 Sequoiadendron giganteum HOM05D004718 ORTHO05D015872 1.6e-06 58.9 78 43.6
Os03g0192900 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 4.8e-06 57.4 89 41.6


User provided reference genes

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