Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36435 Trifolium pratense HOM05D001174 ORTHO05D001003 5.3e-20 99.8 41 100.0
arahy.Tifrunner.gnm1.ann1.LCQF6T Arachis hypogaea HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
arahy.Tifrunner.gnm1.ann1.TP2IXW Arachis hypogaea HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Glyma.10G176200 Glycine max HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Glyma.20G214100 Glycine max HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Lj5g0023059 Lotus japonicus HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Lalb_Chr06g0168761 Lupinus albus HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Phvul.007G114100 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Psat1g113200 Pisum sativum HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
TPR.G5813 Trifolium pratense HOM05D001174 ORTHO05D001003 2.5e-17 90.9 41 87.8
Ca_09902_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 3.2e-17 90.5 41 87.8
Psat4g172080 Pisum sativum HOM05D001174 ORTHO05D001003 4.2e-17 90.1 41 87.8
Medtr1g076990 Medicago truncatula HOM05D001174 ORTHO05D001003 1.6e-16 88.2 40 90.0
Ca_25248_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 2.1e-16 87.8 41 85.4
QL10p037912 Quercus lobata HOM05D001174 ORTHO05D001003 2.1e-16 87.8 41 82.9
Cfa020921 Carpinus fangiana HOM05D001174 ORTHO05D001003 3.6e-16 87.0 41 80.5
CiPaw.16G119600 Carya illinoinensis HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 80.5
MELO3C003278.2 Cucumis melo HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 80.5
CsaV3_4G029980 Cucumis sativus L. HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 80.5
FAN19G1419 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 78.0
FAN23G0797 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 78.0
FAN26G0168 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 78.0
FAN28G1665 Fragaria x ananassa HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 78.0
MD15G1141000 Malus domestica HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 78.0
RcHm_v2.0_Chr3g0485271 Rosa chinensis HOM05D001174 ORTHO05D001003 4.7e-16 86.7 41 78.0
Potri.004G134700 Populus trichocarpa HOM05D001174 ORTHO05D001003 6.1e-16 86.3 41 82.9
Potri.T045600 Populus trichocarpa HOM05D001174 ORTHO05D001003 6.1e-16 86.3 41 80.5
Sabra19G0000300 Salix brachista HOM05D001174 ORTHO05D001003 6.1e-16 86.3 41 80.5
Sabra19G0012500 Salix brachista HOM05D001174 ORTHO05D001003 6.1e-16 86.3 41 80.5
Eucgr.I00019 Eucalyptus grandis HOM05D001174 ORTHO05D001003 1.4e-15 85.1 41 78.0
Ciclev10025026m.g Citrus clementina HOM05D001174 ORTHO05D001003 2.3e-15 84.3 41 80.5
CANSAT78G2060 Cannabis sativa HOM05D001174 ORTHO05D001003 3.9e-15 83.6 41 80.5
Nitab4.5_0002209g0010 Nicotiana tabacum HOM05D001174 ORTHO05D001003 3.9e-15 83.6 41 82.9
Prupe.4G288800 Prunus persica HOM05D001174 ORTHO05D001003 3.9e-15 83.6 41 75.6
TWI79G0263 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 3.9e-15 83.6 41 82.9
Cpa.g.sc138.43 Carica papaya HOM05D001174 ORTHO05D001003 5.1e-15 83.2 41 82.9
TWI31G0341 Tripterygium wilfordii HOM05D001174 ORTHO05D001003 5.1e-15 83.2 41 82.9
Manes.13G153700 Manihot esculenta HOM05D001174 ORTHO05D001003 6.7e-15 82.8 40 80.0
Atru.chr3.1455 Acer truncatum HOM05D001174 ORTHO05D001003 1.1e-14 82.0 41 78.0
Nitab4.5_0003104g0040 Nicotiana tabacum HOM05D001174 ORTHO05D001003 1.5e-14 81.6 41 80.5
Thecc.01G146300 Theobroma cacao HOM05D001174 ORTHO05D001003 2.0e-14 81.3 40 80.0
HanXRQChr13g0422081 Helianthus annuus HOM05D001174 ORTHO05D001003 2.6e-14 80.9 41 78.0
COL.COLO4_35284 Corchorus olitorius HOM05D001174 ORTHO05D001003 3.3e-14 80.5 40 77.5
Gohir.A10G158722 Gossypium hirsutum HOM05D001174 ORTHO05D001003 4.4e-14 80.1 40 80.0
Gohir.D10G109800 Gossypium hirsutum HOM05D001174 ORTHO05D001003 4.4e-14 80.1 40 80.0
Gorai.011G120900 Gossypium raimondii HOM05D001174 ORTHO05D001003 4.4e-14 80.1 40 80.0
Actinidia12241 Actinidia chinensis HOM05D001174 ORTHO05D001003 7.4e-14 79.3 41 75.6
HanXRQChr03g0091961 Helianthus annuus HOM05D001174 ORTHO05D001003 7.4e-14 79.3 40 77.5
Lj4C822T3 Lonicera japonica HOM05D001174 ORTHO05D001003 7.4e-14 79.3 41 78.0
Peaxi162Scf00003g02037 Petunia axillaris HOM05D001174 ORTHO05D001003 7.4e-14 79.3 41 78.0
Peaxi162Scf00577g00006 Petunia axillaris HOM05D001174 ORTHO05D001003 9.7e-14 79.0 41 78.0
Dinv26829 Davidia involucrata HOM05D001174 ORTHO05D001003 1.7e-13 78.2 41 73.2
vmacro18689 Vaccinium macrocarpon HOM05D001174 ORTHO05D001003 1.7e-13 78.2 41 75.6
Lsat_1_v5_gn_3_120241 Lactuca sativa HOM05D001174 ORTHO05D001003 2.2e-13 77.8 41 78.0
PGSC0003DMG400006006 Solanum tuberosum HOM05D001174 ORTHO05D001003 2.2e-13 77.8 41 73.2
CAN.G7.10 Capsicum annuum HOM05D001174 ORTHO05D001003 3.7e-13 77.0 41 75.6
ECA240G2300 Erigeron canadensis HOM05D001174 ORTHO05D001003 3.7e-13 77.0 41 75.6
CSS0035790 Camellia sinensis var. sinensis HOM05D001174 ORTHO05D001003 4.8e-13 76.6 41 78.0
Oeu054206.1 Olea europaea HOM05D001174 ORTHO05D001003 4.8e-13 76.6 41 73.2
Sabra04G0083300 Salix brachista HOM05D001174 ORTHO05D001003 4.8e-13 76.6 41 73.2
Migut.H02544 Erythranthe guttata HOM05D001174 ORTHO05D001003 6.3e-13 76.3 41 73.2
Oeu046361.1 Olea europaea HOM05D001174 ORTHO05D001003 6.3e-13 76.3 41 78.0
Duzib147G0032 Durio zibethinus HOM05D001174 ORTHO05D001003 8.2e-13 75.9 40 72.5
PGR119G0702 Punica granatum HOM05D001174 ORTHO05D001003 8.2e-13 75.9 53 60.4
Cc00_g27260 Coffea canephora HOM05D001174 ORTHO05D001003 1.1e-12 75.5 41 75.6
Solyc04g007270.3 Solanum lycopersicum HOM05D001174 ORTHO05D001003 1.8e-12 74.7 41 70.7
Sopen04g002330 Solanum pennellii HOM05D001174 ORTHO05D001003 1.8e-12 74.7 41 70.7
SGA_v2.0_scaffold12G06273 Striga asiatica HOM05D001174 ORTHO05D001003 1.8e-12 74.7 41 73.2
GSVIVG01000247001 Vitis vinifera HOM05D001174 ORTHO05D001003 1.8e-12 74.7 41 73.2
DCAR_013187 Daucus carota HOM05D001174 ORTHO05D001003 9.1e-12 72.4 34 82.4
SGA_v2.0_scaffold51G18843 Striga asiatica HOM05D001174 ORTHO05D001003 9.1e-12 72.4 41 70.7
AUR62000609 Chenopodium quinoa HOM05D001174 ORTHO05D001003 2.6e-11 70.9 40 67.5
AUR62006960 Chenopodium quinoa HOM05D001174 ORTHO05D001003 2.6e-11 70.9 40 67.5
EL10Ac4g09733 Beta vulgaris HOM05D001174 ORTHO05D001003 3.5e-11 70.5 40 67.5
ECA246G4811 Erigeron canadensis HOM05D000330 ORTHO05D000209 3.5e-11 70.5 41 68.3
MSTRG.23235 Avicennia marina HOM05D001174 ORTHO05D001003 5.9e-11 69.7 41 65.9
Ah.02g118200 Amaranthus hybridus HOM05D001174 ORTHO05D001003 1.7e-10 68.2 40 62.5
Sc06g0005280 Simmondsia chinensis HOM05D001174 ORTHO05D001003 2.9e-10 67.4 40 70.0
Hund21763 Selenicereus undatus HOM05D001174 ORTHO05D001003 8.5e-10 65.9 40 60.0
Nn5g27186 Nelumbo nucifera HOM05D001174 ORTHO05D001003 1.5e-09 65.1 39 61.5
TAR381G0430 Trochodendron aralioides HOM05D001174 ORTHO05D001003 2.5e-09 64.3 41 63.4
unitig_736.g22366 Utricularia gibba HOM05D001174 ORTHO05D001003 3.2e-09 63.9 40 62.5
PSO210G1502 Papaver somniferum HOM05D001174 ORTHO05D001003 2.7e-08 60.8 42 61.9
Lj3g0008343 Lotus japonicus HOM05D001174 ORTHO05D001003 4.7e-08 60.1 40 55.0
Ca_00234_v3 Cicer arietinum L. HOM05D001174 ORTHO05D001003 1.0e-07 58.9 40 57.5
Dinv22066 Davidia involucrata HOM05D001174 ORTHO05D001003 1.0e-07 58.9 44 54.5
VMungo1127G0395 Vigna mungo HOM05D001174 ORTHO05D001003 1.0e-07 58.9 41 53.7
Glyma.09G233500 Glycine max HOM05D001174 ORTHO05D001003 1.4e-07 58.5 41 51.2
Glyma.12G003300 Glycine max HOM05D001174 ORTHO05D001003 1.4e-07 58.5 41 51.2
Phvul.011G004000 Phaseolus vulgaris HOM05D001174 ORTHO05D001003 1.4e-07 58.5 41 51.2
ATR1089G105 Amborella trichopoda HOM05D001174 ORTHO05D001003 2.3e-07 57.8 36 58.3
arahy.Tifrunner.gnm1.ann1.F4SVGY Arachis hypogaea HOM05D001174 ORTHO05D001003 4.0e-07 57.0 40 52.5
arahy.Tifrunner.gnm1.ann1.NM7VB5 Arachis hypogaea HOM05D001174 ORTHO05D001003 4.0e-07 57.0 40 52.5
PSO761G0025 Papaver somniferum HOM05D001174 ORTHO05D001003 4.0e-07 57.0 42 59.5
TPR.G15121 Trifolium pratense HOM05D001174 ORTHO05D001003 4.0e-07 57.0 41 56.1
SHI16846 Sapria himalayana HOM05D001174 ORTHO05D001003 5.2e-07 56.6 40 60.0
MBI03_g39996_MAGBIO Magnolia biondii HOM05D001174 ORTHO05D001003 1.5e-06 55.1 41 56.1
GSVIVG01037120001 Vitis vinifera HOM05D001174 ORTHO05D001003 2.0e-06 54.7 41 48.8
Medtr4g035550 Medicago truncatula HOM05D001174 ORTHO05D001003 2.6e-06 54.3 41 51.2
Lalb_Chr15g0079801 Lupinus albus HOM05D001174 ORTHO05D001003 4.4e-06 53.5 41 53.7
Cpa.g.sc249.16 Carica papaya HOM05D001174 ORTHO05D001003 5.7e-06 53.1 41 56.1
Manes.17G016200 Manihot esculenta HOM05D001174 ORTHO05D001003 5.7e-06 53.1 41 51.2
CDE05G0825 Ceratophyllum demersum HOM05D001174 ORTHO05D001003 7.5e-06 52.8 41 51.2


User provided reference genes

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