Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36393 Trifolium pratense HOM05D005257 ORTHO05D006425 4.3e-72 274.6 145 100.0
TPR.G17857 Trifolium pratense HOM05D005257 ORTHO05D006425 3.6e-55 218.4 109 100.0
Medtr7g086290 Medicago truncatula HOM05D005257 ORTHO05D006425 5.4e-51 204.5 109 95.4
Ca_08293_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 1.2e-50 203.4 109 94.5
Ca_29914_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 1.2e-50 203.4 109 94.5
Psat3g087120 Pisum sativum HOM05D005257 ORTHO05D006425 8.7e-49 197.2 109 90.8
Lalb_Chr10g0095341 Lupinus albus HOM05D005257 ORTHO05D006425 7.3e-48 194.1 109 89.0
arahy.Tifrunner.gnm1.ann1.DQ02GG Arachis hypogaea HOM05D005257 ORTHO05D006425 6.2e-47 191.0 109 87.2
arahy.Tifrunner.gnm1.ann1.YCKM6W Arachis hypogaea HOM05D005257 ORTHO05D006425 6.2e-47 191.0 109 87.2
arahy.Tifrunner.gnm1.ann1.B386PI Arachis hypogaea HOM05D005257 ORTHO05D006425 1.1e-46 190.3 109 87.2
arahy.Tifrunner.gnm1.ann1.JQ1SRI Arachis hypogaea HOM05D005257 ORTHO05D006425 1.1e-46 190.3 109 87.2
Glyma.19G114400 Glycine max HOM05D005257 ORTHO05D006425 1.8e-46 189.5 109 87.2
Glyma.16G038400 Glycine max HOM05D005257 ORTHO05D006425 6.9e-46 187.6 109 86.2
VMungo1383G2809 Vigna mungo HOM05D005257 ORTHO05D006425 6.9e-46 187.6 109 86.2
Lj1g0012853 Lotus japonicus HOM05D005257 ORTHO05D006425 1.7e-44 183.0 109 83.5
Gohir.A11G232100 Gossypium hirsutum HOM05D005257 ORTHO05D006425 2.9e-44 182.2 109 81.7
Phvul.001G113700 Phaseolus vulgaris HOM05D005257 ORTHO05D006425 2.9e-44 182.2 109 83.5
Gohir.D11G243400 Gossypium hirsutum HOM05D005257 ORTHO05D006425 3.8e-44 181.8 109 81.7
Gorai.007G258400 Gossypium raimondii HOM05D005257 ORTHO05D006425 3.8e-44 181.8 109 81.7
Duzib177G0708 Durio zibethinus HOM05D005257 ORTHO05D006425 1.9e-43 179.5 109 80.7
Thecc.05G245000 Theobroma cacao HOM05D005257 ORTHO05D006425 1.2e-42 176.8 109 79.8
Dinv11935 Davidia involucrata HOM05D005257 ORTHO05D006425 2.1e-42 176.0 109 78.9
Dinv05572 Davidia involucrata HOM05D005257 ORTHO05D006425 7.8e-42 174.1 109 78.0
TWI31G1180 Tripterygium wilfordii HOM05D005257 ORTHO05D006425 1.0e-41 173.7 109 78.9
COL.COLO4_28605 Corchorus olitorius HOM05D005257 ORTHO05D006425 1.3e-41 173.3 109 76.1
Lj4C106T9 Lonicera japonica HOM05D005257 ORTHO05D006425 1.3e-41 173.3 109 77.1
PGR042G1596 Punica granatum HOM05D005257 ORTHO05D006425 1.3e-41 173.3 109 76.1
Eucgr.A02125 Eucalyptus grandis HOM05D005257 ORTHO05D006425 3.9e-41 171.8 109 76.1
ClCG04G005430 Citrullus lanatus HOM05D005257 ORTHO05D006425 5.1e-41 171.4 109 77.1
MD12G1008000 Malus domestica HOM05D005257 ORTHO05D006425 5.1e-41 171.4 125 69.6
Prupe.1G541500 Prunus persica HOM05D005257 ORTHO05D006425 5.1e-41 171.4 125 69.6
Cfa017688 Carpinus fangiana HOM05D005257 ORTHO05D006425 6.6e-41 171.0 109 77.1
RcHm_v2.0_Chr6g0270841 Rosa chinensis HOM05D005257 ORTHO05D006425 6.6e-41 171.0 109 78.0
Oeu044649.1 Olea europaea HOM05D005257 ORTHO05D006425 8.7e-41 170.6 109 78.0
PGR042G3559 Punica granatum HOM05D005257 ORTHO05D006425 8.7e-41 170.6 109 75.2
SalBow3G0128 Salvia bowleyana HOM05D005257 ORTHO05D006425 8.7e-41 170.6 109 76.1
Atru.chr2.1463 Acer truncatum HOM05D005257 ORTHO05D006425 1.1e-40 170.2 109 77.1
FvH4_2g11600 Fragaria vesca HOM05D005257 ORTHO05D006425 1.1e-40 170.2 109 77.1
FAN15G1561 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.1e-40 170.2 109 77.1
FAN24G1403 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.1e-40 170.2 109 77.1
FAN27G2011 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.1e-40 170.2 109 77.1
Migut.J00763 Erythranthe guttata HOM05D005257 ORTHO05D006425 1.5e-40 169.9 109 75.2
Hma1.2p1_0768F.1_g215600 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 1.5e-40 169.9 109 75.2
Nn1g06286 Nelumbo nucifera HOM05D005257 ORTHO05D006425 1.5e-40 169.9 125 68.0
ECA232G0672 Erigeron canadensis HOM05D005257 ORTHO05D006425 1.9e-40 169.5 109 76.1
HanXRQChr12g0354211 Helianthus annuus HOM05D005257 ORTHO05D006425 1.9e-40 169.5 109 74.3
TAR362G1082 Trochodendron aralioides HOM05D005257 ORTHO05D006425 1.9e-40 169.5 109 78.0
GSVIVG01029949001 Vitis vinifera HOM05D005257 ORTHO05D006425 1.9e-40 169.5 124 69.4
CiPaw.09G164800 Carya illinoinensis HOM05D005257 ORTHO05D006425 3.3e-40 168.7 109 75.2
CsaV3_4G012150 Cucumis sativus L. HOM05D005257 ORTHO05D006425 3.3e-40 168.7 109 75.2
HanXRQChr02g0058981 Helianthus annuus HOM05D005257 ORTHO05D006425 4.3e-40 168.3 109 73.4
Sc10g0005500 Simmondsia chinensis HOM05D005257 ORTHO05D006425 4.3e-40 168.3 125 64.8
Haze_20460 Corylus avellana HOM05D005257 ORTHO05D006425 5.6e-40 167.9 109 75.2
MELO3C008815.2 Cucumis melo HOM05D005257 ORTHO05D006425 5.6e-40 167.9 109 74.3
Lj1g0008743 Lotus japonicus HOM05D005257 ORTHO05D006425 5.6e-40 167.9 101 82.2
MBI05_g13905_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 5.6e-40 167.9 109 75.2
MBI05_g42570_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 5.6e-40 167.9 109 75.2
Potri.013G061400 Populus trichocarpa HOM05D005257 ORTHO05D006425 5.6e-40 167.9 125 67.2
THA.LOC104802876 Tarenaya hassleriana HOM05D005257 ORTHO05D006425 1.3e-39 166.8 124 62.9
Cfa005496 Carpinus fangiana HOM05D005257 ORTHO05D006425 1.6e-39 166.4 109 76.1
Aqoxy1G00543 Aquilegia oxysepala HOM05D005257 ORTHO05D006425 2.1e-39 166.0 109 75.2
Lsat_1_v5_gn_9_60281 Lactuca sativa HOM05D005257 ORTHO05D006425 2.1e-39 166.0 109 71.6
SGA_v2.0_scaffold31G12800 Striga asiatica HOM05D005257 ORTHO05D006425 2.1e-39 166.0 109 73.4
Carub.0006s1614 Capsella rubella HOM05D005257 ORTHO05D006425 2.8e-39 165.6 109 73.4
Thhalv10012737m.g Eutrema salsugineum HOM05D005257 ORTHO05D006425 3.6e-39 165.2 124 66.1
MSTRG.19351 Avicennia marina HOM05D005257 ORTHO05D006425 4.8e-39 164.9 109 74.3
Sabra13G0054300 Salix brachista HOM05D005257 ORTHO05D006425 4.8e-39 164.9 125 66.4
Peaxi162Scf00117g00415 Petunia axillaris HOM05D005257 ORTHO05D006425 6.2e-39 164.5 109 75.2
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 1.1e-38 163.7 109 74.3
PSO384G0627 Papaver somniferum HOM05D005257 ORTHO05D006425 1.1e-38 163.7 109 70.6
Rhsim08G0079300 Rhododendron simsii HOM05D005257 ORTHO05D006425 1.1e-38 163.7 109 74.3
Solyc03g097280.4 Solanum lycopersicum HOM05D005257 ORTHO05D006425 1.1e-38 163.7 109 73.4
Sopen03g028050 Solanum pennellii HOM05D005257 ORTHO05D006425 1.1e-38 163.7 109 73.4
Ciclev10018934m.g Citrus clementina HOM05D005257 ORTHO05D006425 1.4e-38 163.3 109 75.2
DCAR_003248 Daucus carota HOM05D005257 ORTHO05D006425 1.4e-38 163.3 109 71.6
Manes.08G154800 Manihot esculenta HOM05D005257 ORTHO05D006425 1.8e-38 162.9 109 72.5
AT5G17930 Arabidopsis thaliana HOM05D005257 ORTHO05D006425 2.4e-38 162.5 124 64.5
CDE10G0660 Ceratophyllum demersum HOM05D005257 ORTHO05D006425 2.4e-38 162.5 125 63.2
Zm00001eb417990 Zea mays HOM05D005257 ORTHO05D006425 2.4e-38 162.5 109 74.3
Actinidia21524 Actinidia chinensis HOM05D005257 ORTHO05D006425 3.1e-38 162.2 109 75.2
Sp6g26340 Schrenkiella parvula HOM05D005257 ORTHO05D006425 3.1e-38 162.2 109 72.5
AL6G29030 Arabidopsis lyrata HOM05D005257 ORTHO05D006425 4.0e-38 161.8 124 64.5
vmacro18109 Vaccinium macrocarpon HOM05D005257 ORTHO05D006425 4.0e-38 161.8 109 72.5
Aa31LG11G11610 Aethionema arabicum HOM05D005257 ORTHO05D006425 6.9e-38 161.0 109 69.7
BcaB05g23293 Brassica carinata HOM05D005257 ORTHO05D006425 9.0e-38 160.6 109 71.6
A02p04570 Brassica napus HOM05D005257 ORTHO05D006425 9.0e-38 160.6 109 71.6
C02p09500 Brassica napus HOM05D005257 ORTHO05D006425 9.0e-38 160.6 109 71.6
BolC2t06856H Brassica oleracea HOM05D005257 ORTHO05D006425 9.0e-38 160.6 109 71.6
BraA02t05418Z Brassica rapa HOM05D005257 ORTHO05D006425 9.0e-38 160.6 109 71.6
CANSAT35G0669 Cannabis sativa HOM05D005257 ORTHO05D006425 1.5e-37 159.8 109 73.4
Os05g0147200 Oryza sativa ssp. japonica HOM05D005257 ORTHO05D006425 1.5e-37 159.8 109 71.6
PSO339G0351 Papaver somniferum HOM05D005257 ORTHO05D006425 2.0e-37 159.5 109 69.7
QL07p027173 Quercus lobata HOM05D005257 ORTHO05D006425 3.4e-37 158.7 109 73.4
Sed0016053 Sechium edule HOM05D005257 ORTHO05D006425 3.4e-37 158.7 106 72.6
EL10Ac5g11757 Beta vulgaris HOM05D005257 ORTHO05D006425 4.5e-37 158.3 125 64.0
Cc06_g07290 Coffea canephora HOM05D005257 ORTHO05D006425 5.8e-37 157.9 109 72.5
HPP92_025446 Vanilla planifolia HOM05D005257 ORTHO05D006425 5.8e-37 157.9 109 68.8
CARHR195170 Cardamine hirsuta HOM05D005257 ORTHO05D006425 7.6e-37 157.5 109 71.6
Cpa.g.sc56.49 Carica papaya HOM05D005257 ORTHO05D006425 9.9e-37 157.1 109 70.6
AUR62039715 Chenopodium quinoa HOM05D005257 ORTHO05D006425 1.3e-36 156.8 125 63.2
AUR62036264 Chenopodium quinoa HOM05D005257 ORTHO05D006425 1.7e-36 156.4 125 63.2
ATR0697G033 Amborella trichopoda HOM05D005257 ORTHO05D006425 2.2e-36 156.0 109 68.8
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.1e-35 153.7 103 71.8
SEGI_02385 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 2.4e-35 152.5 109 67.0
GSVIVG01027853001 Vitis vinifera HOM05D005257 ORTHO05D006425 4.6e-34 148.3 109 67.0
Ah.15g100140 Amaranthus hybridus HOM05D005257 ORTHO05D006425 6.0e-34 147.9 125 60.0
Hund03701 Selenicereus undatus HOM05D005257 ORTHO05D006425 1.0e-33 147.1 125 61.6
Hund15057 Selenicereus undatus HOM05D005257 ORTHO05D006425 1.8e-33 146.4 125 61.6
AagrBONN_evm.TU.Sc2ySwM_340.475 Anthoceros agrestis HOM05D005257 ORTHO05D006425 1.5e-32 143.3 109 59.6
CSS0043158 Camellia sinensis var. sinensis HOM05D005257 ORTHO05D006425 4.3e-32 141.7 106 66.0
Pp3c3_21680 Physcomitrium patens HOM05D005257 ORTHO05D006425 3.1e-30 135.6 109 57.8
CBR_g51831 Chara braunii HOM05D005257 ORTHO05D006425 2.0e-29 132.9 110 55.5
SMO172G0149 Selaginella moellendorffii HOM05D005257 ORTHO05D006425 1.7e-28 129.8 105 61.9
Mapoly0135s0015 Marchantia polymorpha HOM05D005257 ORTHO05D006425 3.2e-27 125.6 110 51.8
Nitab4.5_0010527g0010 Nicotiana tabacum HOM05D005257 ORTHO05D006425 1.4e-22 110.2 77 68.8
Nitab4.5_0000098g0070 Nicotiana tabacum HOM05D005257 ORTHO05D006425 8.4e-20 100.9 70 68.6
Hma1.2p1_0768F.1_g215610 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 7.9e-18 94.4 52 84.6
Cre09.g415200 Chlamydomonas reinhardtii HOM05D005257 ORTHO05D006425 2.2e-15 86.3 128 41.4
RcHm_v2.0_Chr5g0003011 Rosa chinensis HOM05D005257 ORTHO05D006425 2.5e-11 72.8 43 79.1
RcHm_v2.0_Chr5g0003131 Rosa chinensis HOM05D005257 ORTHO05D006425 2.5e-11 72.8 43 79.1
MCO03G302 Micromonas commoda HOM05D005257 ORTHO05D006425 4.2e-11 72.0 112 38.4


User provided reference genes

Program Settings