Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36312 Trifolium pratense HOM05D001780 ORTHO05D005322 5.3e-43 177.2 83 100.0
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 1.0e-41 172.9 83 96.4
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 1.2e-39 166.0 83 91.6
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 2.7e-39 164.9 83 90.4
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 2.0e-34 148.7 82 85.4
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 8.5e-33 143.3 83 79.5
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 7.2e-32 140.2 83 78.3
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 3.0e-30 134.8 83 77.1
arahy.Tifrunner.gnm1.ann1.I7AL06 Arachis hypogaea HOM05D001780 ORTHO05D005322 3.9e-30 134.4 83 77.1
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 6.7e-30 133.7 83 75.9
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 9.7e-29 129.8 72 81.9
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 6.3e-28 127.1 71 76.1
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 1.8e-27 125.6 71 74.6
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 2.4e-27 125.2 82 72.0
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 3.1e-27 124.8 71 74.6
CSS0032424 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 1.6e-26 122.5 82 64.6
Haze_01210 Corylus avellana HOM05D001780 ORTHO05D005322 2.6e-26 121.7 71 73.2
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 7.7e-26 120.2 83 66.3
Actinidia40255 Actinidia chinensis HOM05D001780 ORTHO05D005322 1.3e-25 119.4 82 67.1
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 2.2e-25 118.6 83 63.9
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 5.0e-25 117.5 83 67.5
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 5.0e-25 117.5 78 62.8
Lj6A675T27 Lonicera japonica HOM05D001780 ORTHO05D005322 8.5e-25 116.7 82 67.1
Lj6A676G60 Lonicera japonica HOM05D001780 ORTHO05D005322 8.5e-25 116.7 82 67.1
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 8.5e-25 116.7 83 68.7
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 1.1e-24 116.3 71 67.6
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 2.5e-24 115.2 84 65.5
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 2.5e-24 115.2 82 63.4
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 2.5e-24 115.2 83 67.5
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 2.5e-24 115.2 83 67.5
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 2.5e-24 115.2 82 64.6
vmacro08154 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 2.5e-24 115.2 82 67.1
Eucgr.H03911 Eucalyptus grandis HOM05D001780 ORTHO05D005322 3.2e-24 114.8 83 65.1
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 3.2e-24 114.8 83 66.3
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.6e-23 112.5 78 61.5
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.6e-23 112.5 78 61.5
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 2.1e-23 112.1 78 61.5
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 2.7e-23 111.7 83 61.4
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 4.7e-23 110.9 83 60.2
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 4.7e-23 110.9 83 67.5
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 8.0e-23 110.2 71 69.0
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 8.0e-23 110.2 67 71.6
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 1.0e-22 109.8 70 64.3
ClCG05G006110 Citrullus lanatus HOM05D001780 ORTHO05D005322 1.4e-22 109.4 67 68.7
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 1.8e-22 109.0 81 60.5
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 1.8e-22 109.0 82 63.4
Sabra10G0009300 Salix brachista HOM05D001780 ORTHO05D005322 2.3e-22 108.6 71 67.6
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 2.3e-22 108.6 84 58.3
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 3.0e-22 108.2 85 63.5
AL8G22400 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 4.0e-22 107.8 81 55.6
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 4.0e-22 107.8 81 55.6
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 4.0e-22 107.8 68 67.6
MBI19_g29219_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D005322 5.2e-22 107.5 67 62.7
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 6.7e-22 107.1 73 61.6
Aa31sc180G20 Aethionema arabicum HOM05D001780 ORTHO05D005322 8.8e-22 106.7 82 58.5
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 1.1e-21 106.3 82 57.3
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 1.1e-21 106.3 82 57.3
COL.COLO4_04957 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.1e-21 106.3 70 65.7
MELO3C006665.2 Cucumis melo HOM05D001780 ORTHO05D005322 1.1e-21 106.3 68 66.2
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 1.5e-21 105.9 68 66.2
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 2.6e-21 105.1 84 64.3
BcaB07g34212 Brassica carinata HOM05D001780 ORTHO05D005322 2.6e-21 105.1 82 57.3
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 3.3e-21 104.8 82 57.3
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 3.3e-21 104.8 82 57.3
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 3.3e-21 104.8 82 57.3
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 4.4e-21 104.4 81 55.6
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 4.4e-21 104.4 82 56.1
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 4.4e-21 104.4 82 56.1
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 4.4e-21 104.4 73 58.9
BraA06t26775Z Brassica rapa HOM05D001780 ORTHO05D005322 5.7e-21 104.0 82 53.7
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 7.5e-21 103.6 82 58.5
Cc03_g01900 Coffea canephora HOM05D001780 ORTHO05D005322 9.7e-21 103.2 82 58.5
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 1.3e-20 102.8 71 57.7
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 1.3e-20 102.8 67 62.7
Nitab4.5_0027974g0010 Nicotiana tabacum HOM05D001780 ORTHO05D005322 1.3e-20 102.8 67 62.7
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 1.7e-20 102.4 82 53.7
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 1.7e-20 102.4 70 67.1
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 2.8e-20 101.7 82 53.7
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 3.7e-20 101.3 82 56.1
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 4.8e-20 100.9 80 56.2
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 4.8e-20 100.9 82 54.9
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 4.8e-20 100.9 67 61.2
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 4.8e-20 100.9 82 61.0
CAN.G185.35 Capsicum annuum HOM05D001780 ORTHO05D005322 6.3e-20 100.5 67 59.7
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 6.3e-20 100.5 82 58.5
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 6.3e-20 100.5 67 59.7
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 8.2e-20 100.1 82 51.2
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 8.2e-20 100.1 67 58.2
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 8.2e-20 100.1 67 58.2
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 1.4e-19 99.4 82 56.1
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 1.8e-19 99.0 82 59.8
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 3.1e-19 98.2 83 62.7
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 4.1e-19 97.8 80 55.0
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 5.3e-19 97.4 68 61.8
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 7.0e-19 97.1 81 55.6
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 4.5e-18 94.4 84 58.3
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 7.7e-18 93.6 82 52.4
Zm00001eb256880 Zea mays HOM05D001780 ORTHO05D005322 2.2e-17 92.0 82 50.0
Os02g0778200 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D005322 1.1e-16 89.7 82 48.8
HPP92_016436 Vanilla planifolia HOM05D001780 ORTHO05D005322 1.1e-16 89.7 67 56.7
SGA_v2.0_scaffold67G22635 Striga asiatica HOM05D001780 ORTHO05D005322 1.9e-16 89.0 70 55.7
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 7.2e-16 87.0 68 52.9
unitig_0.g2594 Utricularia gibba HOM05D001780 ORTHO05D005322 4.7e-15 84.3 67 53.7
Pp3c17_5990 Physcomitrium patens HOM05D001780 ORTHO05D005322 4.0e-14 81.3 68 42.6
Mapoly0002s0241 Marchantia polymorpha HOM05D001780 ORTHO05D005322 1.2e-13 79.7 74 47.3
SMO367G0518 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 2.8e-12 75.1 60 51.7
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 1.4e-11 72.8 70 45.7
CBR_g29448 Chara braunii HOM05D001780 ORTHO05D005322 2.9e-09 65.1 83 36.1
SMO230G0004 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 2.9e-09 65.1 67 46.3
PRCOL_00005558 Prasinoderma coloniale HOM05D001780 ORTHO05D005322 3.6e-07 58.2 52 48.1
Cre16.g689871 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D005322 3.0e-06 55.1 47 53.2


User provided reference genes

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