Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36264 Trifolium pratense HOM05D001833 ORTHO05D001776 3.6e-29 131.0 68 100.0
TPR.G8823 Trifolium pratense HOM05D001833 ORTHO05D001776 9.7e-19 96.3 51 98.0
Medtr1g096450 Medicago truncatula HOM05D001833 ORTHO05D001776 1.2e-16 89.4 54 85.2
Ca_10616_v3 Cicer arietinum L. HOM05D001833 ORTHO05D001776 3.8e-15 84.3 51 82.4
Psat6g187520 Pisum sativum HOM05D001833 ORTHO05D001776 1.5e-14 82.4 51 80.4
Glyma.20G175400 Glycine max HOM05D001833 ORTHO05D001776 1.9e-14 82.0 51 78.4
arahy.Tifrunner.gnm1.ann1.M52U16 Arachis hypogaea HOM05D001833 ORTHO05D001776 9.4e-14 79.7 51 76.5
arahy.Tifrunner.gnm1.ann1.M8FFM7 Arachis hypogaea HOM05D001833 ORTHO05D001776 2.1e-13 78.6 51 74.5
Glyma.10G216600 Glycine max HOM05D001833 ORTHO05D001776 4.7e-13 77.4 51 70.6
Lj5g0004468 Lotus japonicus HOM05D001833 ORTHO05D001776 4.7e-13 77.4 54 68.5
Lj7C290T0 Lonicera japonica HOM05D001833 ORTHO05D001776 1.0e-12 76.3 51 72.5
Phvul.007G089500 Phaseolus vulgaris HOM05D001833 ORTHO05D001776 1.0e-12 76.3 54 68.5
VMungo0720G0103 Vigna mungo HOM05D001833 ORTHO05D001776 1.8e-12 75.5 54 66.7
Lalb_Chr02g0141811 Lupinus albus HOM05D001833 ORTHO05D001776 2.6e-11 71.6 53 62.3
Dinv03384 Davidia involucrata HOM05D001833 ORTHO05D001776 3.4e-11 71.2 51 66.7
Duzib177G0683 Durio zibethinus HOM05D001833 ORTHO05D001776 3.4e-11 71.2 51 66.7
Lsat_1_v5_gn_4_135961 Lactuca sativa HOM05D001833 ORTHO05D001776 5.7e-11 70.5 51 66.7
Lalb_Chr06g0162051 Lupinus albus HOM05D001833 ORTHO05D001776 5.7e-11 70.5 51 62.7
CANSAT25G3276 Cannabis sativa HOM05D001833 ORTHO05D001776 7.5e-11 70.1 51 64.7
Dinv41711 Davidia involucrata HOM05D001833 ORTHO05D001776 7.5e-11 70.1 51 64.7
Migut.N03348 Erythranthe guttata HOM05D001833 ORTHO05D001776 7.5e-11 70.1 51 68.6
Nitab4.5_0001018g0010 Nicotiana tabacum HOM05D001833 ORTHO05D001776 7.5e-11 70.1 51 70.6
Actinidia03512 Actinidia chinensis HOM05D001833 ORTHO05D001776 9.8e-11 69.7 51 68.6
Actinidia29418 Actinidia chinensis HOM05D001833 ORTHO05D001776 9.8e-11 69.7 51 68.6
Solyc11g018620.3 Solanum lycopersicum HOM05D001833 ORTHO05D001776 9.8e-11 69.7 55 63.6
Sopen11g009590 Solanum pennellii HOM05D001833 ORTHO05D001776 9.8e-11 69.7 55 63.6
PGSC0003DMG400000881 Solanum tuberosum HOM05D001833 ORTHO05D001776 9.8e-11 69.7 55 63.6
TAR381G1445 Trochodendron aralioides HOM05D001833 ORTHO05D001776 9.8e-11 69.7 51 68.6
Ciclev10002092m.g Citrus clementina HOM05D001833 ORTHO05D001776 1.3e-10 69.3 55 63.6
HanXRQChr04g0107541 Helianthus annuus HOM05D001833 ORTHO05D001776 1.3e-10 69.3 51 66.7
AT4G09580 Arabidopsis thaliana HOM05D001833 ORTHO05D001776 1.7e-10 68.9 51 64.7
Lalb_Chr03g0036171 Lupinus albus HOM05D001833 ORTHO05D001776 1.7e-10 68.9 51 62.7
Manes.18G100900 Manihot esculenta HOM05D001833 ORTHO05D001776 1.7e-10 68.9 54 59.3
Nitab4.5_0000807g0040 Nicotiana tabacum HOM05D001833 ORTHO05D001776 1.7e-10 68.9 51 68.6
Hma1.2p1_0162F.1_g072240 Hydrangea macrophylla HOM05D001833 ORTHO05D001776 2.2e-10 68.6 51 64.7
Nn5g27695 Nelumbo nucifera HOM05D001833 ORTHO05D001776 2.2e-10 68.6 54 59.3
Potri.013G113000 Populus trichocarpa HOM05D001833 ORTHO05D001776 2.2e-10 68.6 51 64.7
Potri.019G083500 Populus trichocarpa HOM05D001833 ORTHO05D001776 2.2e-10 68.6 51 64.7
CSS0022356 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 2.8e-10 68.2 51 64.7
Migut.C01253 Erythranthe guttata HOM05D001833 ORTHO05D001776 2.8e-10 68.2 55 61.8
SalBow6G3973 Salvia bowleyana HOM05D001833 ORTHO05D001776 2.8e-10 68.2 51 68.6
Sopen06g023880 Solanum pennellii HOM05D001833 ORTHO05D001776 2.8e-10 68.2 51 68.6
CARHR260450 Cardamine hirsuta HOM05D001833 ORTHO05D001776 3.7e-10 67.8 51 64.7
Nitab4.5_0000303g0120 Nicotiana tabacum HOM05D001833 ORTHO05D001776 3.7e-10 67.8 51 66.7
Nitab4.5_0002500g0050 Nicotiana tabacum HOM05D001833 ORTHO05D001776 3.7e-10 67.8 51 66.7
Oeu021015.2 Olea europaea HOM05D001833 ORTHO05D001776 3.7e-10 67.8 55 61.8
Oeu030000.1 Olea europaea HOM05D001833 ORTHO05D001776 3.7e-10 67.8 51 64.7
Oeu039615.1 Olea europaea HOM05D001833 ORTHO05D001776 4.8e-10 67.4 55 61.8
Prupe.8G057800 Prunus persica HOM05D001833 ORTHO05D001776 4.8e-10 67.4 51 60.8
MSTRG.22448 Avicennia marina HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 64.7
BcaB03g15627 Brassica carinata HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BcaC08g45746 Brassica carinata HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BcaC08g46633 Brassica carinata HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BcaC08g46635 Brassica carinata HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BcaC08g46638 Brassica carinata HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BcaC08g46639 Brassica carinata HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
A07p38110 Brassica napus HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
C06p35260 Brassica napus HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
C06p46030 Brassica napus HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BolC6t38631H Brassica oleracea HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BolC6t39655H Brassica oleracea HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
BraA07t31376Z Brassica rapa HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
CARHR064770 Cardamine hirsuta HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 60.8
COL.COLO4_32917 Corchorus olitorius HOM05D001833 ORTHO05D001776 6.3e-10 67.0 55 58.2
Solyc06g065400.3 Solanum lycopersicum HOM05D001833 ORTHO05D001776 6.3e-10 67.0 51 66.7
AL6G43160 Arabidopsis lyrata HOM05D001833 ORTHO05D001776 8.3e-10 66.6 51 62.7
CAN.G199.13 Capsicum annuum HOM05D001833 ORTHO05D001776 8.3e-10 66.6 51 66.7
Lalb_Chr19g0129421 Lupinus albus HOM05D001833 ORTHO05D001776 8.3e-10 66.6 51 58.8
TWI60G1005 Tripterygium wilfordii HOM05D001833 ORTHO05D001776 8.3e-10 66.6 51 62.7
BcaC04g20959 Brassica carinata HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 62.7
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 1.1e-09 66.2 52 57.7
C09p37540 Brassica napus HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 62.7
BolC9t56584H Brassica oleracea HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 62.7
BraA09t38521Z Brassica rapa HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 62.7
Carub.0006s2803 Capsella rubella HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 62.7
Duzib116G0056 Durio zibethinus HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 60.8
Gohir.A02G060200 Gossypium hirsutum HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 60.8
Gohir.D02G065700 Gossypium hirsutum HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 60.8
Gorai.005G074400 Gossypium raimondii HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 60.8
HanXRQChr11g0326081 Helianthus annuus HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 58.8
Sp5g27010 Schrenkiella parvula HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 58.8
SGA_v2.0_scaffold25G11070 Striga asiatica HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 64.7
GSVIVG01034486001 Vitis vinifera HOM05D001833 ORTHO05D001776 1.1e-09 66.2 51 60.8
A02p17580 Brassica napus HOM05D001833 ORTHO05D001776 1.4e-09 65.9 51 58.8
BraA02t06804Z Brassica rapa HOM05D001833 ORTHO05D001776 1.4e-09 65.9 51 58.8
CiPaw.08G059300 Carya illinoinensis HOM05D001833 ORTHO05D001776 1.4e-09 65.9 51 58.8
Peaxi162Scf00268g01133 Petunia axillaris HOM05D001833 ORTHO05D001776 1.4e-09 65.9 51 64.7
SGA_v2.0_scaffold149G36596 Striga asiatica HOM05D001833 ORTHO05D001776 1.4e-09 65.9 51 64.7
A07p30490 Brassica napus HOM05D001833 ORTHO05D001776 1.8e-09 65.5 51 60.8
A09p29510 Brassica napus HOM05D001833 ORTHO05D001776 1.8e-09 65.5 51 62.7
BraA07t30685Z Brassica rapa HOM05D001833 ORTHO05D001776 1.8e-09 65.5 51 60.8
MD05G1041900 Malus domestica HOM05D001833 ORTHO05D001776 1.8e-09 65.5 51 60.8
ECA232G4706 Erigeron canadensis HOM05D001833 ORTHO05D001776 2.4e-09 65.1 51 58.8
Manes.02G192000 Manihot esculenta HOM05D001833 ORTHO05D001776 2.4e-09 65.1 54 59.3
Sed0001822 Sechium edule HOM05D001833 ORTHO05D001776 2.4e-09 65.1 51 58.8
Sabra13G0095900 Salix brachista HOM05D001833 ORTHO05D001776 3.1e-09 64.7 51 62.7
PGSC0003DMG400026114 Solanum tuberosum HOM05D001833 ORTHO05D001776 3.1e-09 64.7 51 62.7
BcaC03g15313 Brassica carinata HOM05D001833 ORTHO05D001776 4.1e-09 64.3 51 56.9
C02p29230 Brassica napus HOM05D001833 ORTHO05D001776 4.1e-09 64.3 51 56.9
BolC2t08973H Brassica oleracea HOM05D001833 ORTHO05D001776 4.1e-09 64.3 51 56.9
MELO3C024120.2 Cucumis melo HOM05D001833 ORTHO05D001776 4.1e-09 64.3 51 58.8
Sed0012961 Sechium edule HOM05D001833 ORTHO05D001776 4.1e-09 64.3 51 58.8
Thecc.08G183600 Theobroma cacao HOM05D001833 ORTHO05D001776 4.1e-09 64.3 51 58.8
Atru.chr13.1775 Acer truncatum HOM05D001833 ORTHO05D001776 5.4e-09 63.9 55 58.2
BcaB01g01405 Brassica carinata HOM05D001833 ORTHO05D001776 5.4e-09 63.9 51 60.8
CiPaw.07G159500 Carya illinoinensis HOM05D001833 ORTHO05D001776 5.4e-09 63.9 51 58.8
CsaV3_7G023760 Cucumis sativus L. HOM05D001833 ORTHO05D001776 5.4e-09 63.9 51 58.8
RcHm_v2.0_Chr6g0272001 Rosa chinensis HOM05D001833 ORTHO05D001776 5.4e-09 63.9 51 56.9
THA.LOC104810547 Tarenaya hassleriana HOM05D001833 ORTHO05D001776 5.4e-09 63.9 51 58.8
AT1G71940 Arabidopsis thaliana HOM05D001833 ORTHO05D001776 7.0e-09 63.5 51 58.8
Thhalv10028857m.g Eutrema salsugineum HOM05D001833 ORTHO05D001776 7.0e-09 63.5 51 62.7
FAN15G0182 Fragaria x ananassa HOM05D001833 ORTHO05D001776 7.0e-09 63.5 51 56.9
Lalb_Chr21g0305801 Lupinus albus HOM05D001833 ORTHO05D001776 7.0e-09 63.5 51 56.9
MD10G1048400 Malus domestica HOM05D001833 ORTHO05D001776 7.0e-09 63.5 51 60.8
BcaB03g15629 Brassica carinata HOM05D001833 ORTHO05D001776 9.1e-09 63.2 51 58.8
FAN27G1099 Fragaria x ananassa HOM05D001833 ORTHO05D001776 9.1e-09 63.2 51 56.9
Sabra19G0094900 Salix brachista HOM05D001833 ORTHO05D001776 9.1e-09 63.2 51 58.8
TAR628G1668 Trochodendron aralioides HOM05D001833 ORTHO05D001776 9.1e-09 63.2 51 58.8
Aa31LG9G14880 Aethionema arabicum HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 60.8
AL2G31550 Arabidopsis lyrata HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 56.9
Carub.0002s1872 Capsella rubella HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 56.9
Cpa.g.c38244 Carica papaya HOM05D001833 ORTHO05D001776 1.2e-08 62.8 50 60.0
Thhalv10018999m.g Eutrema salsugineum HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 56.9
PSO017G5955 Papaver somniferum HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 60.8
PSO063G6985 Papaver somniferum HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 60.8
Peaxi162Scf00560g00733 Petunia axillaris HOM05D001833 ORTHO05D001776 1.2e-08 62.8 55 60.0
THA.LOC104816319 Tarenaya hassleriana HOM05D001833 ORTHO05D001776 1.2e-08 62.8 51 58.8
Aa31LG4G8680 Aethionema arabicum HOM05D001833 ORTHO05D001776 1.6e-08 62.4 51 56.9
Cc10_g10420 Coffea canephora HOM05D001833 ORTHO05D001776 1.6e-08 62.4 52 63.5
Sp6g08030 Schrenkiella parvula HOM05D001833 ORTHO05D001776 1.6e-08 62.4 51 60.8
Cfa013852 Carpinus fangiana HOM05D001833 ORTHO05D001776 2.0e-08 62.0 54 59.3
QL02p033799 Quercus lobata HOM05D001833 ORTHO05D001776 2.0e-08 62.0 51 54.9
ClCG09G010580 Citrullus lanatus HOM05D001833 ORTHO05D001776 2.7e-08 61.6 51 54.9
Lj4A502G47 Lonicera japonica HOM05D001833 ORTHO05D001776 2.7e-08 61.6 51 60.8
SGA_v2.0_scaffold118G32475 Striga asiatica HOM05D001833 ORTHO05D001776 2.7e-08 61.6 50 60.0
Haze_22525 Corylus avellana HOM05D001833 ORTHO05D001776 3.5e-08 61.2 54 57.4
Haze_22540 Corylus avellana HOM05D001833 ORTHO05D001776 3.5e-08 61.2 54 57.4
Eucgr.F02614 Eucalyptus grandis HOM05D001833 ORTHO05D001776 3.5e-08 61.2 51 58.8
FvH4_2g11950 Fragaria vesca HOM05D001833 ORTHO05D001776 3.5e-08 61.2 51 54.9
Hund27086 Selenicereus undatus HOM05D001833 ORTHO05D001776 3.5e-08 61.2 51 56.9
Cc00_g10270 Coffea canephora HOM05D001833 ORTHO05D001776 4.5e-08 60.8 52 61.5
FAN24G0574 Fragaria x ananassa HOM05D001833 ORTHO05D001776 4.5e-08 60.8 51 54.9
unitig_0.g917 Utricularia gibba HOM05D001833 ORTHO05D001776 4.5e-08 60.8 51 54.9
vmacro00763 Vaccinium macrocarpon HOM05D001833 ORTHO05D001776 4.5e-08 60.8 51 58.8
Aqoxy5G02592 Aquilegia oxysepala HOM05D001833 ORTHO05D001776 5.9e-08 60.5 51 52.9
EL10Ac1g00083 Beta vulgaris HOM05D001833 ORTHO05D001776 5.9e-08 60.5 51 58.8
DCAR_001045 Daucus carota HOM05D001833 ORTHO05D001776 5.9e-08 60.5 48 60.4
Rhsim11G0058700 Rhododendron simsii HOM05D001833 ORTHO05D001776 5.9e-08 60.5 51 58.8
CSS0039526 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 7.7e-08 60.1 51 58.8
TWI32G0603 Tripterygium wilfordii HOM05D001833 ORTHO05D001776 1.0e-07 59.7 51 54.9
PGR042G3591 Punica granatum HOM05D001833 ORTHO05D001776 1.7e-07 58.9 54 50.0
Sc23g0001240 Simmondsia chinensis HOM05D001833 ORTHO05D001776 1.7e-07 58.9 51 52.9
ATR0584G036 Amborella trichopoda HOM05D001833 ORTHO05D001776 2.9e-07 58.2 52 59.6
Cfa012473 Carpinus fangiana HOM05D001833 ORTHO05D001776 5.0e-07 57.4 51 58.8
ClCG11G008100 Citrullus lanatus HOM05D001833 ORTHO05D001776 5.0e-07 57.4 51 54.9
FAN24G2617 Fragaria x ananassa HOM05D001833 ORTHO05D001776 5.0e-07 57.4 51 51.0
Lsat_1_v5_gn_1_9980 Lactuca sativa HOM05D001833 ORTHO05D001776 5.0e-07 57.4 50 62.0
TAR375G0171 Trochodendron aralioides HOM05D001833 ORTHO05D001776 5.0e-07 57.4 51 58.8
SEGI_15843 Sequoiadendron giganteum HOM05D001833 ORTHO05D001776 6.6e-07 57.0 52 51.9
AUR62022691 Chenopodium quinoa HOM05D001833 ORTHO05D001776 8.6e-07 56.6 51 54.9
Hund16799 Selenicereus undatus HOM05D001833 ORTHO05D001776 8.6e-07 56.6 51 51.0
Actinidia25981 Actinidia chinensis HOM05D001833 ORTHO05D001776 1.5e-06 55.8 51 56.9
TAR629G1441 Trochodendron aralioides HOM05D001833 ORTHO05D001776 1.5e-06 55.8 51 54.9
CDE08G0639 Ceratophyllum demersum HOM05D001833 ORTHO05D001776 1.9e-06 55.5 52 59.6
SEGI_12492 Sequoiadendron giganteum HOM05D001833 ORTHO05D001776 1.9e-06 55.5 51 51.0
CiPaw.12G065900 Carya illinoinensis HOM05D001833 ORTHO05D001776 2.5e-06 55.1 52 53.8
Sed0000100 Sechium edule HOM05D001833 ORTHO05D001776 3.3e-06 54.7 51 52.9
Solyc08g076670.3 Solanum lycopersicum HOM05D001833 ORTHO05D001776 3.3e-06 54.7 51 54.9
Sopen08g025220 Solanum pennellii HOM05D001833 ORTHO05D001776 3.3e-06 54.7 51 54.9
PGSC0003DMG400017528 Solanum tuberosum HOM05D001833 ORTHO05D001776 3.3e-06 54.7 51 54.9
Actinidia03358 Actinidia chinensis HOM05D001833 ORTHO05D001776 4.2e-06 54.3 51 54.9
Ah.05g178210 Amaranthus hybridus HOM05D001833 ORTHO05D001776 4.2e-06 54.3 51 52.9
CSS0025300 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 4.2e-06 54.3 51 54.9
AUR62004645 Chenopodium quinoa HOM05D001833 ORTHO05D001776 5.5e-06 53.9 51 51.0
MBI04_g20347_MAGBIO Magnolia biondii HOM05D001833 ORTHO05D001776 5.5e-06 53.9 51 52.9
Nn3g19445 Nelumbo nucifera HOM05D001833 ORTHO05D001776 5.5e-06 53.9 51 54.9
ATR0665G380 Amborella trichopoda HOM05D001833 ORTHO05D001776 7.2e-06 53.5 50 50.0
CAN.G1522.4 Capsicum annuum HOM05D001833 ORTHO05D001776 7.2e-06 53.5 51 54.9
Haze_08189 Corylus avellana HOM05D001833 ORTHO05D001776 7.2e-06 53.5 51 54.9
Dinv25237 Davidia involucrata HOM05D001833 ORTHO05D001776 7.2e-06 53.5 51 56.9
PGR031G3301 Punica granatum HOM05D001833 ORTHO05D001776 9.5e-06 53.1 51 56.9
Sabra01G0109100 Salix brachista HOM05D001833 ORTHO05D001776 9.5e-06 53.1 51 54.9


User provided reference genes

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