Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-13 77.8 37 100.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-13 77.8 37 100.0
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.5e-13 77.4 37 97.3
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 4.3e-13 76.6 37 97.3
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 9.7e-13 75.5 37 94.6
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.1e-11 72.0 37 89.2
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.4e-11 71.6 37 89.2
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.4e-11 71.6 37 89.2
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.4e-11 70.9 33 100.0
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 6.9e-11 69.3 37 89.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 6.9e-11 69.3 37 89.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 9.1e-11 68.9 37 86.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-10 68.2 37 83.8
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-10 68.2 37 83.8
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.4e-10 67.0 37 83.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 5.9e-10 66.2 38 86.8
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.0e-09 65.5 37 83.8
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.3e-09 65.1 37 81.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-09 64.7 37 81.1
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.2e-09 64.3 37 81.1
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.9e-09 63.9 37 81.1
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 3.8e-09 63.5 37 81.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 3.8e-09 63.5 37 78.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 5.0e-09 63.2 37 78.4
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.0e-09 63.2 37 78.4
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 5.0e-09 63.2 37 78.4
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 78.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 75.7
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 75.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 75.7
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 75.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 78.4
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 78.4
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 78.4
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 75.7
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 6.5e-09 62.8 37 78.4
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 8.5e-09 62.4 37 78.4
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 8.5e-09 62.4 35 82.9
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 8.5e-09 62.4 36 80.6
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.5e-09 62.4 37 75.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 8.5e-09 62.4 37 78.4
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 8.5e-09 62.4 37 75.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 75.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 75.7
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 73.0
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 78.4
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 78.4
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 78.4
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 75.7
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 78.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.1e-08 62.0 37 75.7
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.4e-08 61.6 37 75.7
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.4e-08 61.6 37 75.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.4e-08 61.6 37 75.7
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.4e-08 61.6 37 73.0
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.4e-08 61.6 37 75.7
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.4e-08 61.6 37 75.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 73.0
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 73.0
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.9e-08 61.2 37 75.7
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 73.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 73.0
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 75.7
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.5e-08 60.8 37 78.4
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 78.4
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 75.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 75.7
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 75.7
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.5e-08 60.8 37 73.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.2e-08 60.5 37 70.3
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.2e-08 60.5 37 70.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 3.2e-08 60.5 37 73.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.2e-08 60.5 37 73.0
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 3.2e-08 60.5 37 73.0
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 3.2e-08 60.5 37 73.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 3.2e-08 60.5 37 73.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.2e-08 60.1 37 73.0
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.2e-08 60.1 37 73.0
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.2e-08 60.1 37 70.3
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.2e-08 60.1 37 75.7
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 5.5e-08 59.7 37 75.7
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.5e-08 59.7 37 73.0
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.5e-08 59.7 37 73.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.5e-08 59.7 37 73.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 5.5e-08 59.7 37 73.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 5.5e-08 59.7 37 73.0
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 7.2e-08 59.3 37 70.3
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.2e-08 59.3 37 73.0
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.2e-08 59.3 37 75.7
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.2e-08 59.3 37 70.3
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 9.4e-08 58.9 37 73.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 9.4e-08 58.9 37 70.3
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 9.4e-08 58.9 35 80.0
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.2e-07 58.5 37 73.0
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.2e-07 58.5 37 73.0
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.2e-07 58.5 37 73.0
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.2e-07 58.5 37 70.3
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.2e-07 58.5 37 73.0
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-07 58.2 37 70.3
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-07 58.2 37 73.0
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-07 58.2 37 73.0
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.6e-07 58.2 37 73.0
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 2.7e-07 57.4 37 70.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.7e-07 57.4 35 74.3
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 3.6e-07 57.0 37 70.3
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 4.7e-07 56.6 37 70.3
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 4.7e-07 56.6 37 70.3
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 6.1e-07 56.2 37 70.3
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 6.1e-07 56.2 34 79.4
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 6.1e-07 56.2 37 64.9
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 6.1e-07 56.2 37 67.6
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 6.1e-07 56.2 37 67.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 6.1e-07 56.2 37 67.6
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.1e-07 56.2 37 70.3
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.9e-07 55.8 36 72.2
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.0e-06 55.5 36 69.4
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.4e-06 55.1 27 88.9
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.8e-06 54.7 37 67.6
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.8e-06 54.7 32 78.1
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 3.0e-06 53.9 32 71.9
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 5.1e-06 53.1 37 67.6
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 6.7e-06 52.8 37 64.9
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 8.8e-06 52.4 37 62.2


User provided reference genes

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