Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.4e-220 769.2 372 100.0
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.4e-188 662.9 372 86.3
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 2.6e-182 642.1 372 83.9
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 3.3e-177 625.2 373 83.4
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 2.8e-160 568.9 374 74.9
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.5e-153 546.6 372 72.0
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.9e-153 546.2 373 71.8
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 5.0e-149 531.6 371 72.2
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 9.1e-143 510.8 410 64.1
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 4.2e-140 501.9 408 67.2
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 1.5e-137 493.4 372 67.5
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 1.8e-135 486.5 372 66.9
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 3.5e-126 455.7 372 60.5
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.0e-122 444.1 373 59.2
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 5.5e-116 421.8 374 57.2
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 5.5e-116 421.8 375 58.4
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.8e-114 416.8 372 57.8
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.8e-112 409.5 372 56.2
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.8e-111 406.8 374 57.8
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 9.2e-111 404.4 397 58.2
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 4.5e-110 402.1 373 56.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 2.9e-109 399.4 373 55.2
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 6.6e-109 398.3 376 54.3
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 6.6e-109 398.3 380 55.0
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.5e-108 396.4 375 54.4
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 4.3e-108 395.6 373 55.0
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 4.3e-108 395.6 375 54.1
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 5.6e-108 395.2 376 54.5
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 5.6e-108 395.2 374 55.6
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.2e-107 394.0 375 54.1
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.2e-107 394.0 373 55.0
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.1e-107 393.3 377 55.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 3.4e-105 386.0 374 53.2
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.4e-105 385.6 382 53.7
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 5.7e-105 385.2 382 53.7
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 9.8e-105 384.4 376 54.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.3e-104 384.0 377 53.3
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.9e-104 382.9 376 54.0
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 4.9e-104 382.1 344 57.0
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 4.1e-103 379.0 388 52.8
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 5.4e-103 378.6 374 53.5
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.2e-102 377.5 374 54.0
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.7e-102 376.3 380 52.6
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.7e-101 373.6 372 53.0
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.3e-101 373.2 374 52.4
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.3e-101 373.2 415 49.9
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.0e-101 372.9 380 52.1
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 3.9e-101 372.5 374 52.9
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 5.0e-101 372.1 375 53.1
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.1e-100 370.9 378 53.7
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 3.3e-100 369.4 377 52.8
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 7.3e-100 368.2 373 52.3
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 9.5e-100 367.9 374 52.4
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 4.7e-99 365.5 372 52.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.1e-98 362.8 375 50.7
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 6.8e-98 361.7 301 60.8
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 3.4e-97 359.4 375 50.7
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.1e-95 354.4 373 50.7
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.4e-95 354.0 293 61.8
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.4e-95 353.2 373 50.7
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 4.1e-95 352.4 514 42.0
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.0e-94 350.1 375 51.5
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 5.0e-93 345.5 379 51.2
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.1e-92 344.4 378 50.0
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.5e-92 343.2 377 49.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 3.3e-92 342.8 380 50.5
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 8.1e-91 338.2 374 47.1
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.8e-90 337.0 377 49.9
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.9e-90 334.7 375 50.4
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.5e-89 334.0 375 49.3
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 2.0e-89 333.6 374 48.9
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.4e-87 327.4 366 46.2
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 2.4e-87 326.6 371 50.1
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 5.4e-87 325.5 361 49.9
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.6e-86 323.9 374 48.9
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.3e-85 320.1 295 54.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 5.1e-85 318.9 362 48.9
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 3.3e-84 316.2 362 48.6
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 4.3e-84 315.8 363 50.1
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 9.5e-84 314.7 364 48.6
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.6e-83 313.9 363 49.3
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.1e-83 313.5 363 49.3
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.8e-83 313.2 363 49.3
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.8e-83 313.2 375 47.7
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.8e-83 313.2 368 45.9
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 1.1e-82 311.2 182 84.6
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 1.5e-81 307.4 378 47.6
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.0e-81 307.0 364 48.4
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 1.3e-80 304.3 372 43.0
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 4.9e-80 302.4 373 45.3
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.0e-77 294.7 378 45.5
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 2.4e-74 283.5 295 52.2
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 3.8e-72 276.2 405 41.0
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.1e-70 270.4 306 50.7
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.8e-66 257.3 243 55.1
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 5.8e-65 252.3 377 39.0
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 3.8e-64 249.6 269 49.8
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.3e-61 240.4 375 38.4
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 3.1e-58 229.9 250 50.4
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.3e-56 224.6 364 35.7
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 1.4e-55 221.1 203 53.2
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 1.5e-49 201.1 183 57.4
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 1.4e-47 194.5 159 59.7
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.5e-44 184.5 289 36.0
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 1.9e-44 184.1 170 56.5
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.4e-42 177.9 224 45.5
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 5.3e-42 176.0 254 40.6
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 7.2e-39 165.6 79 96.2
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 1.0e-37 161.8 161 53.4
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.7e-35 154.5 332 30.1
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 1.3e-32 144.8 73 89.0
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 5.0e-32 142.9 82 75.6
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 8.5e-32 142.1 130 55.4
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 2.5e-31 140.6 127 54.3
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 5.5e-31 139.4 130 54.6
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 2.1e-30 137.5 200 35.5
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.1e-28 131.7 138 52.2
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-26 125.2 150 44.0
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 1.4e-26 124.8 93 62.4
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 9.1e-26 122.1 141 41.8
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 5.9e-25 119.4 164 43.9
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.3e-24 118.2 121 48.8
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 3.8e-24 116.7 174 40.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 3.9e-21 106.7 249 31.3
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 2.2e-19 100.9 63 68.3
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.8e-19 99.8 126 50.0
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.8e-19 99.8 126 50.0
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.1e-18 97.1 236 31.4
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.2e-17 95.1 132 43.2
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 3.5e-17 93.6 268 28.4
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 7.7e-17 92.4 245 29.4
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.0e-16 92.0 258 27.9
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 8.5e-16 89.0 129 41.9
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-15 88.6 177 31.6
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.1e-15 88.6 130 41.5
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 2.5e-15 87.4 181 33.1
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 9.4e-15 85.5 274 27.7
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 9.4e-15 85.5 236 30.1
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.7e-14 83.2 294 26.5
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 8.0e-14 82.4 142 35.2
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 8.0e-14 82.4 57 68.4
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 1.0e-13 82.0 248 26.6
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.0e-13 82.0 233 30.5
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.8e-13 81.3 263 29.3
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 2.3e-13 80.9 266 27.4
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.3e-13 80.9 272 27.9
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 4.0e-13 80.1 235 30.6
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.2e-12 78.6 241 29.0
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 5.7e-12 76.3 245 28.2
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.7e-11 73.6 149 34.2
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 1.1e-10 72.0 126 36.5
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 3.1e-10 70.5 64 53.1
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 9.1e-10 68.9 138 32.6
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.0e-08 65.5 135 34.1


User provided reference genes

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