Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36116 Trifolium pratense HOM05D002925 ORTHO05D003247 2.0e-147 525.8 270 100.0
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 1.3e-119 433.3 313 75.1
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 2.8e-109 399.1 323 70.3
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 1.9e-105 386.3 289 72.3
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 1.8e-95 353.2 312 62.2
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 7.6e-91 337.8 316 59.2
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 7.4e-86 321.2 315 57.1
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 7.4e-86 321.2 324 57.1
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 1.2e-83 313.9 349 53.6
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 3.8e-82 308.9 327 54.7
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 3.2e-81 305.8 317 58.0
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 7.4e-78 294.7 344 51.7
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 2.9e-74 282.7 364 49.2
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 4.2e-65 252.3 220 64.5
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 4.5e-59 232.3 332 44.6
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 1.3e-58 230.7 337 45.7
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 5.5e-57 225.3 333 43.2
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 5.5e-57 225.3 336 44.0
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 2.7e-56 223.0 352 42.6
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 6.1e-56 221.9 352 42.9
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 8.0e-56 221.5 351 40.2
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 1.8e-55 220.3 332 44.3
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 2.2e-53 213.4 338 41.1
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 4.8e-53 212.2 293 45.4
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 8.3e-53 211.5 326 42.9
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.1e-52 211.1 339 41.6
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 1.1e-52 211.1 341 43.4
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 2.4e-52 209.9 298 43.0
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 9.1e-52 208.0 330 41.8
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 9.1e-52 208.0 358 40.5
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 9.1e-52 208.0 350 40.9
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 1.6e-51 207.2 316 44.6
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.6e-51 207.2 325 44.6
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.6e-51 207.2 315 42.5
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.0e-51 206.8 316 44.6
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.7e-51 206.5 339 41.6
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 4.5e-51 205.7 329 41.6
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 4.5e-51 205.7 327 41.9
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.3e-50 204.1 279 44.8
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.9e-50 203.0 339 40.4
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.9e-50 203.0 339 40.4
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.8e-50 202.6 324 43.8
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 5.0e-50 202.2 272 44.9
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.5e-49 200.7 344 40.4
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 2.5e-49 199.9 275 44.0
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 3.2e-49 199.5 335 40.6
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 8.0e-48 194.9 284 41.5
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.0e-47 194.5 344 39.5
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 2.3e-47 193.4 317 41.3
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 6.8e-47 191.8 284 42.3
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 9.8e-46 188.0 332 39.5
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 1.3e-45 187.6 258 42.6
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.2e-45 186.8 289 41.9
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 5.4e-44 182.2 300 40.7
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 5.4e-44 182.2 282 41.8
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 9.1e-44 181.4 276 42.0
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.2e-43 181.0 175 52.0
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 5.9e-43 178.7 286 38.8
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 7.7e-43 178.3 349 36.1
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 7.7e-43 178.3 348 38.2
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 1.0e-42 177.9 352 37.5
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.3e-42 177.6 315 36.8
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 1.3e-42 177.6 322 38.5
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 2.9e-42 176.4 337 36.8
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 3.8e-42 176.0 358 34.9
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 5.0e-42 175.6 154 55.2
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 5.6e-41 172.2 309 36.9
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 7.2e-41 171.8 326 36.8
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 7.2e-41 171.8 312 38.8
Lsat_1_v5_gn_1_3860 Lactuca sativa HOM05D002925 ORTHO05D003247 9.5e-41 171.4 309 36.9
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 1.2e-40 171.0 312 38.8
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 1.6e-40 170.6 299 40.1
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 1.6e-40 170.6 311 38.9
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 2.8e-40 169.9 387 33.9
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 2.8e-40 169.9 329 36.8
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.0e-39 167.9 339 36.6
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 1.0e-39 167.9 374 35.0
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 5.2e-39 165.6 362 35.9
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 5.2e-39 165.6 284 42.3
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 1.5e-38 164.1 133 59.4
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.0e-38 163.7 279 38.4
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 3.4e-38 162.9 278 37.4
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 4.4e-38 162.5 335 35.8
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.7e-38 162.2 372 34.1
PSO541G2635 Papaver somniferum HOM05D002925 ORTHO05D003247 7.5e-38 161.8 270 40.0
Cpa.g.sc42.36 Carica papaya HOM05D002925 ORTHO05D003247 2.2e-37 160.2 270 40.7
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.4e-37 158.7 336 34.2
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 6.4e-37 158.7 338 36.1
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 8.3e-37 158.3 332 36.7
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 8.3e-37 158.3 332 36.7
Hund06376 Selenicereus undatus HOM05D002925 ORTHO05D003247 8.3e-37 158.3 278 39.2
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 1.4e-36 157.5 135 57.8
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 1.4e-36 157.5 299 37.5
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.8e-36 157.1 330 35.5
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.8e-36 157.1 317 35.3
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 7.0e-36 155.2 147 54.4
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 9.2e-36 154.8 375 33.3
ECA232G4158 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.2e-35 154.5 145 53.1
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 2.0e-35 153.7 275 41.1
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 2.0e-35 153.7 169 46.7
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 2.7e-35 153.3 151 53.0
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 7.8e-35 151.8 356 32.3
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 8.6e-34 148.3 134 55.2
Sc18g0006800 Simmondsia chinensis HOM05D002925 ORTHO05D003247 8.6e-34 148.3 143 52.4
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 1.5e-33 147.5 140 53.6
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.5e-33 147.5 122 56.6
Nn5g30080 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.9e-33 147.1 307 35.2
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 1.9e-33 147.1 337 32.0
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 2.5e-33 146.7 153 51.6
RcHm_v2.0_Chr7g0243951 Rosa chinensis HOM05D002925 ORTHO05D003247 2.5e-33 146.7 180 45.0
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 1.2e-32 144.4 330 33.3
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 1.6e-32 144.1 136 51.5
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 6.2e-32 142.1 132 52.3
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 6.2e-32 142.1 246 35.8
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 8.0e-32 141.7 132 52.3
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 8.0e-32 141.7 132 52.3
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.0e-31 141.4 132 52.3
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 2.3e-31 140.2 353 34.3
Lsat_1_v5_gn_5_108081 Lactuca sativa HOM05D002925 ORTHO05D003247 4.0e-31 139.4 273 35.5
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 4.0e-31 139.4 287 34.1
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 5.2e-31 139.0 336 33.6
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 8.9e-31 138.3 244 37.7
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 2.0e-30 137.1 134 50.0
THA.LOC104800147 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 2.6e-30 136.7 142 46.5
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 3.4e-30 136.3 155 46.5
MD00G1009700 Malus domestica HOM05D002925 ORTHO05D003247 5.8e-30 135.6 163 44.8
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 7.5e-30 135.2 318 33.0
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 1.3e-29 134.4 145 50.3
Aa31LG7G6230 Aethionema arabicum HOM05D002925 ORTHO05D003247 2.9e-29 133.3 192 35.9
Phvul.009G031600 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 2.9e-29 133.3 337 32.9
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.4e-28 131.0 191 41.9
VMungo1309G2842 Vigna mungo HOM05D002925 ORTHO05D003247 3.2e-28 129.8 304 34.2
HanXRQChr16g0514751 Helianthus annuus HOM05D002925 ORTHO05D003247 4.1e-28 129.4 142 46.5
C07p21440 Brassica napus HOM05D002925 ORTHO05D003247 7.0e-28 128.6 335 32.2
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 7.0e-28 128.6 392 30.4
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 7.0e-28 128.6 242 38.8
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 1.2e-27 127.9 103 58.3
BolC7t42671H Brassica oleracea HOM05D000298 ORTHO05D003247 1.6e-27 127.5 343 30.9
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 1.6e-27 127.5 108 57.4
Lalb_Chr11g0065401 Lupinus albus HOM05D002925 ORTHO05D003247 1.6e-27 127.5 119 52.1
Os08g0485600 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 3.5e-27 126.3 246 32.9
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.6e-27 125.9 108 55.6
PSO531G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 4.6e-27 125.9 318 33.0
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 6.0e-27 125.6 153 44.4
A07p14550 Brassica napus HOM05D002925 ORTHO05D003247 1.0e-26 124.8 357 30.0
BraA07t29201Z Brassica rapa HOM05D002925 ORTHO05D003247 1.0e-26 124.8 357 30.0
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.0e-26 124.8 108 54.6
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 1.0e-26 124.8 108 54.6
Os09g0473350 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 3.9e-26 122.9 242 36.8
Glyma.04G101200 Glycine max HOM05D002925 ORTHO05D003247 5.0e-26 122.5 129 46.5
BcaC06g34950 Brassica carinata HOM05D002925 ORTHO05D003247 6.6e-26 122.1 195 35.9
Thhalv10007200m.g Eutrema salsugineum HOM05D002925 ORTHO05D003247 6.6e-26 122.1 136 44.9
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 1.1e-25 121.3 267 33.7
ECA232G0543 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.5e-25 120.9 122 49.2
Psat5g138880 Pisum sativum HOM05D002925 ORTHO05D003247 4.3e-25 119.4 106 55.7
vmacro01831 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 5.6e-25 119.0 127 55.1
Sp1g19810 Schrenkiella parvula HOM05D002925 ORTHO05D003247 9.5e-25 118.2 173 38.7
EL10Ac9g21492 Beta vulgaris HOM05D002925 ORTHO05D003247 2.8e-24 116.7 267 37.1
RcHm_v2.0_Chr6g0271611 Rosa chinensis HOM05D002925 ORTHO05D003247 2.8e-24 116.7 102 61.8
CARHR022690 Cardamine hirsuta HOM05D002925 ORTHO05D003247 1.8e-23 114.0 208 35.6
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 4.0e-23 112.8 214 35.5
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 6.8e-23 112.1 126 44.4
Glyma.06G102900 Glycine max HOM05D002925 ORTHO05D003247 6.8e-23 112.1 146 41.1
AL1G35760 Arabidopsis lyrata HOM05D002925 ORTHO05D003247 8.9e-23 111.7 156 39.7
BcaB03g14218 Brassica carinata HOM05D002925 ORTHO05D003247 8.9e-23 111.7 373 30.6
arahy.Tifrunner.gnm1.ann1.66CWE3 Arachis hypogaea HOM05D002925 ORTHO05D003247 2.6e-22 110.2 320 29.4
Carub.0001s2186 Capsella rubella HOM05D002925 ORTHO05D003247 2.6e-22 110.2 159 37.7
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 4.4e-22 109.4 331 31.1
AT1G22310 Arabidopsis thaliana HOM05D002925 ORTHO05D003247 5.8e-22 109.0 98 50.0
arahy.Tifrunner.gnm1.ann1.8R41I4 Arachis hypogaea HOM05D002925 ORTHO05D003247 5.8e-22 109.0 313 29.7
TPR.G26131 Trifolium pratense HOM05D002925 ORTHO05D003247 7.5e-22 108.6 349 29.5
Medtr3g074640 Medicago truncatula HOM05D002925 ORTHO05D003247 1.7e-21 107.5 321 30.8
ECA234G1059 Erigeron canadensis HOM05D002925 ORTHO05D003247 2.9e-21 106.7 123 40.7
Thecc.02G136800 Theobroma cacao HOM05D002925 ORTHO05D003247 6.4e-21 105.5 138 45.7
Haze_22282 Corylus avellana HOM05D002925 ORTHO05D003247 8.3e-21 105.1 331 29.3
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.4e-20 104.4 95 56.8
Lsat_1_v5_gn_7_82001 Lactuca sativa HOM05D002925 ORTHO05D003247 9.2e-20 101.7 136 39.0
HanXRQChr11g0338071 Helianthus annuus HOM05D002925 ORTHO05D003247 2.1e-19 100.5 157 35.0
Lj1g0024313 Lotus japonicus HOM05D002925 ORTHO05D003247 6.0e-19 99.0 341 29.0
SEGI_07396 Sequoiadendron giganteum HOM05D002925 ORTHO05D003247 1.3e-18 97.8 129 35.7
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 6.2e-16 89.0 120 40.0
Ca_15252_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 8.1e-16 88.6 363 27.0
Mapoly0029s0056 Marchantia polymorpha HOM05D002925 ORTHO05D003247 2.8e-08 63.5 117 35.9
Rhsim11G0125300 Rhododendron simsii HOM05D002925 ORTHO05D050653 4.4e-06 56.2 60 56.7


User provided reference genes

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