Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 4.7e-79 297.7 146 100.0
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.4e-78 296.2 146 99.3
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.4e-78 296.2 146 99.3
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 1.7e-76 289.3 149 96.6
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 6.4e-76 287.3 141 99.3
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 4.1e-75 284.6 146 95.2
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 1.7e-73 279.3 146 94.5
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.6e-73 277.3 146 94.5
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.6e-73 277.3 146 94.5
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 1.9e-72 275.8 146 93.8
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 3.3e-72 275.0 146 92.5
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 5.6e-72 274.2 146 93.2
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 1.2e-71 273.1 146 93.2
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.4e-70 269.6 146 91.8
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.4e-68 260.4 141 91.5
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.4e-67 259.6 141 90.8
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 3.2e-67 258.5 149 89.3
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.2e-66 256.5 146 87.0
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 1.7e-65 252.7 146 86.3
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.5e-64 249.6 148 88.5
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.9e-64 249.2 147 85.7
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 2.5e-64 248.8 148 88.5
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 2.5e-64 248.8 148 88.5
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 2.5e-64 248.8 148 88.5
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 5.6e-64 247.7 148 87.8
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 5.6e-64 247.7 148 87.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-63 246.5 138 88.4
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 2.1e-63 245.7 147 85.7
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 8.1e-63 243.8 146 87.7
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.0e-61 239.2 149 85.9
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 9.9e-61 236.9 125 93.6
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.4e-59 232.3 139 83.5
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.6e-58 228.0 135 83.7
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 6.2e-55 217.6 158 72.8
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 9.0e-54 213.8 152 73.7
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 9.0e-54 213.8 152 73.7
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 9.0e-54 213.8 152 73.7
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 9.0e-54 213.8 152 73.7
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 1.2e-53 213.4 169 69.2
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 2.6e-53 212.2 146 78.8
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 4.6e-50 201.4 132 78.0
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.0e-49 200.3 146 71.9
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 4.8e-47 191.4 146 71.2
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 6.2e-47 191.0 124 79.0
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 6.2e-47 191.0 124 79.0
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 3.4e-45 185.3 124 77.4
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-38 162.9 137 62.8
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 1.0e-33 147.1 135 60.7
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 6.7e-33 144.4 83 86.7
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.3e-32 142.1 98 69.4
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.1e-30 135.6 110 67.3
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.7e-23 112.1 98 64.3
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 1.1e-19 100.5 58 86.2
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.5e-19 99.4 83 60.2
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 9.4e-19 97.4 54 88.9
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 2.3e-17 92.8 95 53.7
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 3.0e-17 92.4 125 52.0
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 5.2e-17 91.7 122 43.4
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-15 87.0 54 83.3
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 7.0e-14 81.3 47 85.1
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 2.9e-12 75.9 55 81.8
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 6.1e-10 68.2 36 86.1
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-08 63.9 41 78.0
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 3.3e-08 62.4 34 91.2


User provided reference genes

Program Settings