Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36099 Trifolium pratense HOM05D000440 ORTHO05D000295 7.4e-53 210.3 109 100.0
Medtr8g092930 Medicago truncatula HOM05D000440 ORTHO05D000295 2.2e-36 155.6 103 81.6
TPR.G37322 Trifolium pratense HOM05D000440 ORTHO05D000295 3.7e-36 154.8 111 76.6
Ca_17662_v3 Cicer arietinum L. HOM05D000440 ORTHO05D000295 4.1e-35 151.4 111 74.8
Ca_17660_v3 Cicer arietinum L. HOM05D000440 ORTHO05D000295 2.0e-34 149.1 111 74.8
TPR.G37418 Trifolium pratense HOM05D000440 ORTHO05D000295 2.7e-34 148.7 111 75.7
TPR.G37340 Trifolium pratense HOM05D000440 ORTHO05D000295 1.0e-33 146.7 111 72.1
TPR.G37382 Trifolium pratense HOM05D000440 ORTHO05D000295 1.3e-33 146.4 111 72.1
Medtr8g092840 Medicago truncatula HOM05D000440 ORTHO05D000295 1.1e-32 143.3 98 76.5
Medtr8g092970 Medicago truncatula HOM05D000440 ORTHO05D000295 1.1e-32 143.3 109 73.4
Psat7g051200 Pisum sativum HOM05D000440 ORTHO05D000295 2.5e-32 142.1 96 79.2
Medtr8g093010 Medicago truncatula HOM05D000440 ORTHO05D000295 4.2e-32 141.4 101 72.3
Medtr8g092985 Medicago truncatula HOM05D000440 ORTHO05D000295 2.1e-31 139.0 91 79.1
TPR.G37362 Trifolium pratense HOM05D000440 ORTHO05D000295 2.7e-31 138.7 96 77.1
Medtr8g092990 Medicago truncatula HOM05D000440 ORTHO05D000295 1.4e-30 136.3 96 77.1
Psat7g048440 Pisum sativum HOM05D000440 ORTHO05D000295 1.8e-30 136.0 100 74.0
Psat7g047520 Pisum sativum HOM05D000440 ORTHO05D000295 2.3e-30 135.6 109 70.6
Psat7g048560 Pisum sativum HOM05D000440 ORTHO05D000295 3.7e-28 128.3 102 67.6
Psat7g048520 Pisum sativum HOM05D000440 ORTHO05D000295 1.4e-27 126.3 101 69.3
Medtr8g092960 Medicago truncatula HOM05D000440 ORTHO05D000295 1.0e-25 120.2 109 66.1
Psat7g048280 Pisum sativum HOM05D000440 ORTHO05D000295 7.2e-24 114.0 95 69.5
Glyma.08G146600 Glycine max HOM05D000440 ORTHO05D000295 3.6e-23 111.7 113 52.2
Psat7g047840 Pisum sativum HOM05D000440 ORTHO05D000295 6.1e-23 110.9 102 61.8
Glyma.05G188900 Glycine max HOM05D000440 ORTHO05D000295 1.4e-22 109.8 114 51.8
Psat7g048480 Pisum sativum HOM05D000440 ORTHO05D000295 2.3e-22 109.0 101 65.3
Lj4g0027226 Lotus japonicus HOM05D000440 ORTHO05D000295 2.0e-21 105.9 107 54.2
Psat7g047160 Pisum sativum HOM05D000440 ORTHO05D000295 2.6e-21 105.5 109 59.6
Psat7g048320 Pisum sativum HOM05D000440 ORTHO05D000295 3.4e-21 105.1 70 78.6
VMungo0251G0541 Vigna mungo HOM05D000440 ORTHO05D000295 7.5e-21 104.0 111 55.0
Ca_17661_v3 Cicer arietinum L. HOM05D000440 ORTHO05D000295 4.9e-20 101.3 111 55.9
Lalb_Chr13g0296471 Lupinus albus HOM05D000440 ORTHO05D000295 8.3e-20 100.5 109 55.0
Phvul.002G269500 Phaseolus vulgaris HOM05D000440 ORTHO05D000295 8.3e-20 100.5 104 54.8
Lalb_Chr13g0296481 Lupinus albus HOM05D000440 ORTHO05D000295 1.4e-19 99.8 105 58.1
Lj4g0015019 Lotus japonicus HOM05D000440 ORTHO05D000295 1.8e-19 99.4 111 53.2
Lalb_Chr07g0184571 Lupinus albus HOM05D000440 ORTHO05D000295 4.5e-18 94.7 110 50.9
Medtr3g095560 Medicago truncatula HOM05D000440 ORTHO05D000295 7.8e-18 94.0 105 50.5
Lj4g0018227 Lotus japonicus HOM05D000440 ORTHO05D000295 8.6e-17 90.5 109 52.3
Lj1g0016000 Lotus japonicus HOM05D000440 ORTHO05D000295 5.6e-16 87.8 102 49.0
Lalb_Chr13g0296461 Lupinus albus HOM05D000440 ORTHO05D000295 7.3e-16 87.4 97 50.5
Glyma.04G215600 Glycine max HOM05D000440 ORTHO05D000295 2.8e-15 85.5 104 47.1
Manes.13G084200 Manihot esculenta HOM05D000440 ORTHO05D000295 6.1e-15 84.3 105 45.7
Thecc.01G122200 Theobroma cacao HOM05D000440 ORTHO05D000295 6.1e-15 84.3 100 51.0
TPR.G18721 Trifolium pratense HOM05D000440 ORTHO05D000295 6.1e-15 84.3 100 53.0
Glyma.06G150400 Glycine max HOM05D000440 ORTHO05D000295 3.0e-14 82.0 99 46.5
Phvul.009G147700 Phaseolus vulgaris HOM05D000440 ORTHO05D000295 3.0e-14 82.0 102 50.0
CiPaw.03G124500 Carya illinoinensis HOM05D000440 ORTHO05D000295 4.0e-14 81.6 101 44.6
Cfa002862 Carpinus fangiana HOM05D000440 ORTHO05D000295 1.2e-13 80.1 88 43.2
Actinidia09822 Actinidia chinensis HOM05D000440 ORTHO05D000295 2.0e-13 79.3 101 44.6
Hma1.2p1_0006F.1_g004840 Hydrangea macrophylla HOM05D000440 ORTHO05D000295 2.0e-13 79.3 106 48.1
Psat7g047240 Pisum sativum HOM05D000440 ORTHO05D000295 3.4e-13 78.6 72 62.5
TWI31G0610 Tripterygium wilfordii HOM05D000440 ORTHO05D000295 3.4e-13 78.6 93 45.2
DCAR_001427 Daucus carota HOM05D000440 ORTHO05D000295 7.5e-13 77.4 92 45.7
Potri.019G010500 Populus trichocarpa HOM05D000440 ORTHO05D000295 7.5e-13 77.4 107 45.8
Duzib147G0236 Durio zibethinus HOM05D000440 ORTHO05D000295 1.3e-12 76.6 100 45.0
Psat0s2873g0120 Pisum sativum HOM05D000440 ORTHO05D000295 2.2e-12 75.9 70 62.9
Potri.001G309600 Populus trichocarpa HOM05D000440 ORTHO05D000295 2.2e-12 75.9 108 45.4
Haze_25179 Corylus avellana HOM05D000440 ORTHO05D000295 4.9e-12 74.7 87 43.7
Prupe.6G163700 Prunus persica HOM05D000440 ORTHO05D000295 4.9e-12 74.7 93 49.5
COL.COLO4_22430 Corchorus olitorius HOM05D000440 ORTHO05D000295 8.3e-12 73.9 99 41.4
MBI09_g03516_MAGBIO Magnolia biondii HOM05D000440 ORTHO05D000295 1.4e-11 73.2 87 46.0
Rhsim10G0141100 Rhododendron simsii HOM05D000440 ORTHO05D000295 1.9e-11 72.8 112 42.0
VMungo1309G2369 Vigna mungo HOM05D000440 ORTHO05D000295 1.9e-11 72.8 104 41.3
Lalb_Chr08g0238551 Lupinus albus HOM05D000440 ORTHO05D000295 3.2e-11 72.0 107 44.9
Ah.03g146610 Amaranthus hybridus HOM05D000440 ORTHO05D000295 4.1e-11 71.6 106 42.5
Sabra16G0195400 Salix brachista HOM05D000440 ORTHO05D000295 4.1e-11 71.6 109 43.1
Lalb_Chr11g0068291 Lupinus albus HOM05D000440 ORTHO05D000295 5.4e-11 71.2 101 48.5
Lalb_Chr12g0203291 Lupinus albus HOM05D000440 ORTHO05D000295 5.4e-11 71.2 109 44.0
Atru.chr4.654 Acer truncatum HOM05D000440 ORTHO05D000295 7.0e-11 70.9 100 45.0
Gohir.A11G225204 Gossypium hirsutum HOM05D000440 ORTHO05D000295 7.0e-11 70.9 100 45.0
FAN19G0920 Fragaria x ananassa HOM05D000440 ORTHO05D000295 9.2e-11 70.5 101 38.6
THA.LOC104825389 Tarenaya hassleriana HOM05D000440 ORTHO05D000295 1.2e-10 70.1 100 41.0
TAR381G0194 Trochodendron aralioides HOM05D000440 ORTHO05D000295 1.2e-10 70.1 101 39.6
FvH4_1g23480 Fragaria vesca HOM05D000440 ORTHO05D000295 1.6e-10 69.7 101 39.6
Sp3g16860 Schrenkiella parvula HOM05D000440 ORTHO05D000295 1.6e-10 69.7 97 42.3
Actinidia06660 Actinidia chinensis HOM05D000440 ORTHO05D000295 2.0e-10 69.3 100 39.0
FAN23G2024 Fragaria x ananassa HOM05D000440 ORTHO05D000295 2.0e-10 69.3 101 38.6
Cpa.g.sc42.94 Carica papaya HOM05D000440 ORTHO05D000295 2.7e-10 68.9 109 44.0
FAN26G1893 Fragaria x ananassa HOM05D000440 ORTHO05D000295 2.7e-10 68.9 102 40.2
Gorai.003G070100 Gossypium raimondii HOM05D000440 ORTHO05D000295 2.7e-10 68.9 100 45.0
Gohir.D11G223100 Gossypium hirsutum HOM05D000440 ORTHO05D000295 3.5e-10 68.6 100 44.0
Dinv05189 Davidia involucrata HOM05D000440 ORTHO05D000295 4.6e-10 68.2 107 38.3
QL04p076118 Quercus lobata HOM05D000440 ORTHO05D000295 4.6e-10 68.2 93 41.9
Manes.12G150700 Manihot esculenta HOM05D000440 ORTHO05D000295 7.8e-10 67.4 106 41.5
Sabra19G0018300 Salix brachista HOM05D000440 ORTHO05D000295 1.3e-09 66.6 105 43.8
Sabra19G0023800 Salix brachista HOM05D000440 ORTHO05D000295 1.3e-09 66.6 105 43.8
Thhalv10021473m.g Eutrema salsugineum HOM05D000440 ORTHO05D000295 2.3e-09 65.9 96 39.6
CANSAT01G2985 Cannabis sativa HOM05D000440 ORTHO05D000295 3.0e-09 65.5 106 40.6
BcaB06g25930 Brassica carinata HOM05D000440 ORTHO05D000295 3.9e-09 65.1 95 41.1
CiPaw.04G084900 Carya illinoinensis HOM05D000440 ORTHO05D000295 5.0e-09 64.7 83 43.4
QL06p030559 Quercus lobata HOM05D000440 ORTHO05D000295 8.6e-09 63.9 92 40.2
Carub.0003s1859 Capsella rubella HOM05D000440 ORTHO05D000295 1.1e-08 63.5 88 42.0
TWI79G1068 Tripterygium wilfordii HOM05D000440 ORTHO05D000295 1.1e-08 63.5 108 37.0
Eucgr.I00237 Eucalyptus grandis HOM05D000440 ORTHO05D000295 1.5e-08 63.2 101 45.5
BcaB04g17357 Brassica carinata HOM05D000440 ORTHO05D000295 2.5e-08 62.4 102 39.2
QL06p030514 Quercus lobata HOM05D000440 ORTHO05D000295 2.5e-08 62.4 92 39.1
AT1G49230 Arabidopsis thaliana HOM05D000440 ORTHO05D000295 3.3e-08 62.0 89 42.7
Aa31LG8G5600 Aethionema arabicum HOM05D000440 ORTHO05D000295 4.3e-08 61.6 96 40.6
CARHR094180 Cardamine hirsuta HOM05D000440 ORTHO05D000295 4.3e-08 61.6 60 50.0
AL3G32150 Arabidopsis lyrata HOM05D000440 ORTHO05D000295 5.6e-08 61.2 101 38.6
Carub.0001s3842 Capsella rubella HOM05D000440 ORTHO05D000295 5.6e-08 61.2 82 43.9
MSTRG.2683 Avicennia marina HOM05D000440 ORTHO05D000295 7.3e-08 60.8 103 39.8
BolC8t47238H Brassica oleracea HOM05D000440 ORTHO05D000295 9.5e-08 60.5 102 37.3
Aa31LG10G4690 Aethionema arabicum HOM05D000440 ORTHO05D000295 1.2e-07 60.1 88 40.9
TAR628G1391 Trochodendron aralioides HOM05D000440 ORTHO05D000295 1.6e-07 59.7 108 40.7
AL1G56100 Arabidopsis lyrata HOM05D000440 ORTHO05D000295 2.1e-07 59.3 81 43.2
CSS0027867 Camellia sinensis var. sinensis HOM05D000440 ORTHO05D000295 2.1e-07 59.3 90 37.8
CARHR039240 Cardamine hirsuta HOM05D000440 ORTHO05D000295 2.1e-07 59.3 83 43.4
FAN28G1193 Fragaria x ananassa HOM05D000440 ORTHO05D000295 2.1e-07 59.3 101 37.6
C08p04330 Brassica napus HOM05D000440 ORTHO05D000295 2.8e-07 58.9 102 37.3
Ca_16918_v3 Cicer arietinum L. HOM05D000440 ORTHO05D000295 2.8e-07 58.9 105 38.1
Dinv07944 Davidia involucrata HOM05D000440 ORTHO05D000295 2.8e-07 58.9 110 37.3
Thhalv10011772m.g Eutrema salsugineum HOM05D000440 ORTHO05D000295 2.8e-07 58.9 95 41.1
A08p04150 Brassica napus HOM05D000440 ORTHO05D000295 3.6e-07 58.5 102 36.3
BraA08t32439Z Brassica rapa HOM05D000440 ORTHO05D000295 3.6e-07 58.5 102 36.3
AUR62017929 Chenopodium quinoa HOM05D000440 ORTHO05D000295 3.6e-07 58.5 64 46.9
TAR628G0849 Trochodendron aralioides HOM05D000440 ORTHO05D000295 6.2e-07 57.8 98 38.8
AUR62003619 Chenopodium quinoa HOM05D000440 ORTHO05D000295 8.0e-07 57.4 64 45.3
CsaV3_2G018100 Cucumis sativus L. HOM05D000440 ORTHO05D000295 8.0e-07 57.4 93 40.9
Lsat_1_v5_gn_4_138261 Lactuca sativa HOM05D000440 ORTHO05D000295 8.0e-07 57.4 98 40.8
Atru.chr4.529 Acer truncatum HOM05D000440 ORTHO05D000295 1.1e-06 57.0 96 36.5
Ciclev10026487m.g Citrus clementina HOM05D000440 ORTHO05D000295 1.1e-06 57.0 102 35.3
Oeu047654.1 Olea europaea HOM05D000440 ORTHO05D000295 1.4e-06 56.6 97 37.1
Potri.001G309700 Populus trichocarpa HOM05D000440 ORTHO05D000295 1.4e-06 56.6 102 40.2
BcaC05g28574 Brassica carinata HOM05D000440 ORTHO05D000295 1.8e-06 56.2 83 38.6
A05p30840 Brassica napus HOM05D000440 ORTHO05D000295 1.8e-06 56.2 83 38.6
C05p46760 Brassica napus HOM05D000440 ORTHO05D000295 1.8e-06 56.2 83 38.6
BolC5t33406H Brassica oleracea HOM05D000440 ORTHO05D000295 1.8e-06 56.2 83 38.6
Gohir.D10G105700 Gossypium hirsutum HOM05D000440 ORTHO05D000295 1.8e-06 56.2 91 38.5
Aqoxy5G02117 Aquilegia oxysepala HOM05D000440 ORTHO05D000295 2.3e-06 55.8 82 45.1
BraA05t21926Z Brassica rapa HOM05D000440 ORTHO05D000295 2.3e-06 55.8 83 38.6
Gorai.011G115300 Gossypium raimondii HOM05D000440 ORTHO05D000295 2.3e-06 55.8 91 38.5
BcaB04g20748 Brassica carinata HOM05D000440 ORTHO05D000295 4.0e-06 55.1 104 35.6
TAR628G0019 Trochodendron aralioides HOM05D000440 ORTHO05D000295 5.2e-06 54.7 108 37.0


User provided reference genes

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