Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36072 Trifolium pratense HOM05D001068 ORTHO05D025923 2.5e-33 144.8 72 100.0
TPR.G21239 Trifolium pratense HOM05D001068 ORTHO05D025923 1.1e-28 129.4 83 81.9
TPR.G37610 Trifolium pratense HOM05D001068 ORTHO05D003875 7.1e-20 100.1 49 93.9
Ca_21988_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 1.6e-19 99.0 49 91.8
Medtr4g100640 Medicago truncatula HOM05D001068 ORTHO05D003875 1.0e-18 96.3 49 87.8
TPR.G22740 Trifolium pratense HOM05D001068 ORTHO05D025923 1.9e-17 92.0 46 91.3
Hma1.2p1_0316F.1_g122820 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 4.3e-17 90.9 49 83.7
Manes.02G041600 Manihot esculenta HOM05D001068 ORTHO05D003875 9.7e-17 89.7 49 85.7
Hma1.2p1_1136F.1_g260540 Hydrangea macrophylla HOM05D001068 ORTHO05D003875 1.6e-16 89.0 49 81.6
Nn6g33873 Nelumbo nucifera HOM05D001068 ORTHO05D003875 1.6e-16 89.0 49 83.7
vmacro00007 Vaccinium macrocarpon HOM05D001068 ORTHO05D003875 1.6e-16 89.0 49 81.6
VMungo0251G0971 Vigna mungo HOM05D001068 ORTHO05D003875 1.6e-16 89.0 49 83.7
Glyma.05G062200 Glycine max HOM05D001068 ORTHO05D003875 2.2e-16 88.6 49 81.6
Lalb_Chr16g0386611 Lupinus albus HOM05D001068 ORTHO05D003875 2.2e-16 88.6 49 83.7
Manes.01G083700 Manihot esculenta HOM05D001068 ORTHO05D003875 2.8e-16 88.2 49 83.7
CiPaw.12G050100 Carya illinoinensis HOM05D001068 ORTHO05D003875 4.8e-16 87.4 49 81.6
Lj4g0020838 Lotus japonicus HOM05D001068 ORTHO05D003875 4.8e-16 87.4 49 77.6
Cfa012691 Carpinus fangiana HOM05D001068 ORTHO05D003875 6.3e-16 87.0 49 79.6
Haze_07942 Corylus avellana HOM05D001068 ORTHO05D003875 6.3e-16 87.0 49 79.6
Dinv21659 Davidia involucrata HOM05D001068 ORTHO05D003875 6.3e-16 87.0 49 79.6
Phvul.003G222800 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 6.3e-16 87.0 49 81.6
Rhsim11G0003700 Rhododendron simsii HOM05D001068 ORTHO05D003875 8.2e-16 86.7 49 77.6
arahy.Tifrunner.gnm1.ann1.I9A8PV Arachis hypogaea HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 77.6
arahy.Tifrunner.gnm1.ann1.ZPM9RR Arachis hypogaea HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 77.6
CSS0004981 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 77.6
Ca_24593_v3 Cicer arietinum L. HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 81.6
COL.COLO4_37120 Corchorus olitorius HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 75.5
Glyma.01G207500 Glycine max HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 77.6
Glyma.11G035200 Glycine max HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 77.6
PSO782G5462 Papaver somniferum HOM05D001068 ORTHO05D003875 1.1e-15 86.3 49 81.6
Sabra03G0049400 Salix brachista HOM05D001068 ORTHO05D003875 1.4e-15 85.9 49 83.7
Lj2g0000811 Lotus japonicus HOM05D001068 ORTHO05D003875 1.8e-15 85.5 49 79.6
Potri.003G079200 Populus trichocarpa HOM05D001068 ORTHO05D003875 1.8e-15 85.5 49 83.7
TPR.G18124 Trifolium pratense HOM05D001068 ORTHO05D003875 1.8e-15 85.5 49 77.6
FvH4_5g19470 Fragaria vesca HOM05D001068 ORTHO05D003875 2.4e-15 85.1 49 79.6
FAN04G2918 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.4e-15 85.1 49 79.6
FAN08G3629 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.4e-15 85.1 49 79.6
FAN13G2133 Fragaria x ananassa HOM05D001068 ORTHO05D003875 2.4e-15 85.1 49 79.6
Lalb_Chr09g0329981 Lupinus albus HOM05D001068 ORTHO05D003875 2.4e-15 85.1 49 79.6
Psat2g176520 Pisum sativum HOM05D001068 ORTHO05D003875 3.1e-15 84.7 49 81.6
TAR629G1427 Trochodendron aralioides HOM05D001068 ORTHO05D003875 3.1e-15 84.7 49 77.6
Dinv39170 Davidia involucrata HOM05D001068 ORTHO05D003875 4.1e-15 84.3 49 77.6
Medtr5g012920 Medicago truncatula HOM05D001068 ORTHO05D003875 4.1e-15 84.3 49 79.6
CSS0023687 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 5.3e-15 84.0 49 77.6
Duzib068G1125 Durio zibethinus HOM05D001068 ORTHO05D003875 5.3e-15 84.0 49 73.5
Thecc.03G247900 Theobroma cacao HOM05D001068 ORTHO05D003875 5.3e-15 84.0 49 73.5
CiPaw.11G081900 Carya illinoinensis HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 79.6
ClCG01G004240 Citrullus lanatus HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 81.6
Eucgr.E00406 Eucalyptus grandis HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 77.6
FAN18G2254 Fragaria x ananassa HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 77.6
FAN18G3422 Fragaria x ananassa HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 77.6
FAN18G4353 Fragaria x ananassa HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 77.6
Gohir.A09G196500 Gossypium hirsutum HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 75.5
Gorai.006G213900 Gossypium raimondii HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 75.5
Lalb_Chr05g0214331 Lupinus albus HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 77.6
Lalb_Chr05g0214351 Lupinus albus HOM05D001068 ORTHO05D003875 6.9e-15 83.6 49 77.6
Potri.001G155500 Populus trichocarpa HOM05D001068 ORTHO05D003875 9.0e-15 83.2 49 81.6
RcHm_v2.0_Chr7g0204041 Rosa chinensis HOM05D001068 ORTHO05D003875 1.2e-14 82.8 49 77.6
AT4G16760 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 1.5e-14 82.4 49 79.6
QL12p011360 Quercus lobata HOM05D001068 ORTHO05D003875 1.5e-14 82.4 49 79.6
TPR.G18139 Trifolium pratense HOM05D001068 ORTHO05D003875 1.5e-14 82.4 49 73.5
VMungo1215G1615 Vigna mungo HOM05D001068 ORTHO05D003875 1.5e-14 82.4 49 73.5
Atru.chr9.1272 Acer truncatum HOM05D001068 ORTHO05D003875 2.0e-14 82.0 49 75.5
Duzib205G0096 Durio zibethinus HOM05D001068 ORTHO05D003875 2.0e-14 82.0 49 71.4
Lj8A269T38 Lonicera japonica HOM05D001068 ORTHO05D003875 2.0e-14 82.0 49 75.5
Phvul.002G056700 Phaseolus vulgaris HOM05D001068 ORTHO05D003875 2.0e-14 82.0 49 71.4
TWI15G0242 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 2.0e-14 82.0 49 79.6
CANSAT21G1427 Cannabis sativa HOM05D001068 ORTHO05D003875 2.6e-14 81.6 49 73.5
Carub.0007s2462 Capsella rubella HOM05D001068 ORTHO05D003875 2.6e-14 81.6 50 78.0
Oeu040705.1 Olea europaea HOM05D001068 ORTHO05D003875 2.6e-14 81.6 49 71.4
Sed0012317 Sechium edule HOM05D001068 ORTHO05D003875 2.6e-14 81.6 49 79.6
Sopen08g026880 Solanum pennellii HOM05D001068 ORTHO05D003875 2.6e-14 81.6 49 75.5
PGSC0003DMG400004828 Solanum tuberosum HOM05D001068 ORTHO05D003875 2.6e-14 81.6 49 75.5
CSS0035524 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D003875 3.4e-14 81.3 49 73.5
MD04G1060500 Malus domestica HOM05D001068 ORTHO05D003875 3.4e-14 81.3 49 75.5
Hund14578 Selenicereus undatus HOM05D001068 ORTHO05D003875 3.4e-14 81.3 49 79.6
Gohir.A12G215400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 4.5e-14 80.9 49 71.4
Gohir.D09G191100 Gossypium hirsutum HOM05D001068 ORTHO05D003875 4.5e-14 80.9 49 73.5
Gohir.D12G218000 Gossypium hirsutum HOM05D001068 ORTHO05D003875 4.5e-14 80.9 49 71.4
Gorai.008G233600 Gossypium raimondii HOM05D001068 ORTHO05D003875 4.5e-14 80.9 49 71.4
Prupe.5G065100 Prunus persica HOM05D001068 ORTHO05D003875 5.9e-14 80.5 49 77.6
CDE02G3830 Ceratophyllum demersum HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 71.4
MELO3C005515.2 Cucumis melo HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 77.6
HanXRQChr08g0227741 Helianthus annuus HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 71.4
Hund28547 Selenicereus undatus HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 77.6
Hund28548 Selenicereus undatus HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 77.6
TWI81G0453 Tripterygium wilfordii HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 75.5
Zm00001eb376020 Zea mays HOM05D001068 ORTHO05D003875 1.0e-13 79.7 49 71.4
CsaV3_5G004440 Cucumis sativus L. HOM05D001068 ORTHO05D003875 1.3e-13 79.3 49 77.6
Lalb_Chr05g0221141 Lupinus albus HOM05D001068 ORTHO05D003875 1.3e-13 79.3 49 79.6
Nitab4.5_0001381g0040 Nicotiana tabacum HOM05D001068 ORTHO05D003875 1.3e-13 79.3 49 73.5
Prupe.7G067100 Prunus persica HOM05D001068 ORTHO05D003875 1.3e-13 79.3 50 72.0
SHI09349 Sapria himalayana HOM05D001068 ORTHO05D003875 1.3e-13 79.3 49 77.6
Zm00001eb379490 Zea mays HOM05D001068 ORTHO05D003875 1.3e-13 79.3 49 69.4
CAN.G1178.15 Capsicum annuum HOM05D001068 ORTHO05D003875 1.7e-13 79.0 49 73.5
AUR62007112 Chenopodium quinoa HOM05D001068 ORTHO05D003875 1.7e-13 79.0 49 77.6
HanXRQChr16g0501091 Helianthus annuus HOM05D001068 ORTHO05D003875 1.7e-13 79.0 49 71.4
Sc22g0001000 Simmondsia chinensis HOM05D001068 ORTHO05D003875 1.7e-13 79.0 49 75.5
Duzib084G1186 Durio zibethinus HOM05D001068 ORTHO05D003875 2.2e-13 78.6 49 71.4
Thhalv10024621m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 2.2e-13 78.6 49 77.6
Sp7g17360 Schrenkiella parvula HOM05D001068 ORTHO05D003875 2.2e-13 78.6 49 77.6
Sed0021431 Sechium edule HOM05D001068 ORTHO05D003875 2.2e-13 78.6 49 77.6
EL10Ac5g12342 Beta vulgaris HOM05D001068 ORTHO05D003875 2.9e-13 78.2 53 71.7
Cpa.g.sc89.71 Carica papaya HOM05D001068 ORTHO05D003875 2.9e-13 78.2 49 75.5
Sabra01G0125000 Salix brachista HOM05D001068 ORTHO05D003875 2.9e-13 78.2 49 77.6
Sabra01G0125200 Salix brachista HOM05D001068 ORTHO05D003875 2.9e-13 78.2 49 77.6
BcaC09g50411 Brassica carinata HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 77.6
A01p20470 Brassica napus HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 77.6
C01p25740 Brassica napus HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 77.6
BolC1t02524H Brassica oleracea HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 77.6
BraA01t01975Z Brassica rapa HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 77.6
Ciclev10019196m.g Citrus clementina HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 73.5
Gohir.A11G027400 Gossypium hirsutum HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 69.4
Gohir.D11G026600 Gossypium hirsutum HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 69.4
Gorai.007G028900 Gossypium raimondii HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 69.4
Lsat_1_v5_gn_6_18061 Lactuca sativa HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 67.3
PGR042G1327 Punica granatum HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 75.5
PGSC0003DMG400004827 Solanum tuberosum HOM05D001068 ORTHO05D003875 3.8e-13 77.8 49 71.4
Aa31LG2G12940 Aethionema arabicum HOM05D001068 ORTHO05D003875 5.0e-13 77.4 49 75.5
ATR0057G009 Amborella trichopoda HOM05D001068 ORTHO05D003875 5.0e-13 77.4 55 70.9
Cc08_g12140 Coffea canephora HOM05D001068 ORTHO05D003875 5.0e-13 77.4 49 69.4
AL4G31770 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 6.5e-13 77.0 50 72.0
ECA233G2258 Erigeron canadensis HOM05D001068 ORTHO05D003875 6.5e-13 77.0 49 69.4
BcaNung00152 Brassica carinata HOM05D001068 ORTHO05D003875 8.5e-13 76.6 49 75.5
CARHR223330 Cardamine hirsuta HOM05D001068 ORTHO05D003875 8.5e-13 76.6 49 75.5
Nitab4.5_0003050g0030 Nicotiana tabacum HOM05D001068 ORTHO05D003875 8.5e-13 76.6 49 71.4
SGA_v2.0_scaffold199G41219 Striga asiatica HOM05D001068 ORTHO05D003875 8.5e-13 76.6 54 66.7
AL7G37930 Arabidopsis lyrata HOM05D001068 ORTHO05D003875 1.1e-12 76.3 49 75.5
Solyc08g078400.3 Solanum lycopersicum HOM05D001068 ORTHO05D003875 1.1e-12 76.3 49 71.4
Sopen08g026890 Solanum pennellii HOM05D001068 ORTHO05D003875 1.1e-12 76.3 49 71.4
AUR62019981 Chenopodium quinoa HOM05D001068 ORTHO05D003875 1.4e-12 75.9 49 73.5
THA.LOC104814467 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 1.4e-12 75.9 49 71.4
Ah.12g054350 Amaranthus hybridus HOM05D001068 ORTHO05D003875 1.9e-12 75.5 49 71.4
AT2G35690 Arabidopsis thaliana HOM05D001068 ORTHO05D003875 1.9e-12 75.5 50 70.0
MD13G1127300 Malus domestica HOM05D001068 ORTHO05D003875 1.9e-12 75.5 51 66.7
RcHm_v2.0_Chr3g0481201 Rosa chinensis HOM05D001068 ORTHO05D003875 2.5e-12 75.1 50 68.0
Aqoxy3G02817 Aquilegia oxysepala HOM05D001068 ORTHO05D003875 4.2e-12 74.3 47 74.5
RcHm_v2.0_Chr3g0481221 Rosa chinensis HOM05D001068 ORTHO05D003875 4.2e-12 74.3 50 68.0
unitig_8.g3019 Utricularia gibba HOM05D001068 ORTHO05D003875 4.2e-12 74.3 49 65.3
BcaC01g05713 Brassica carinata HOM05D001068 ORTHO05D003875 5.5e-12 73.9 50 70.0
A03p19670 Brassica napus HOM05D001068 ORTHO05D003875 5.5e-12 73.9 50 70.0
C03p22930 Brassica napus HOM05D001068 ORTHO05D003875 5.5e-12 73.9 50 70.0
BolC3t14694H Brassica oleracea HOM05D001068 ORTHO05D003875 5.5e-12 73.9 50 70.0
BraA03t11221Z Brassica rapa HOM05D001068 ORTHO05D003875 5.5e-12 73.9 50 70.0
Peaxi162Scf00214g00048 Petunia axillaris HOM05D001068 ORTHO05D003875 5.5e-12 73.9 49 67.3
Ah.07g198830 Amaranthus hybridus HOM05D001068 ORTHO05D003875 7.2e-12 73.6 49 71.4
THA.LOC104815504 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 7.2e-12 73.6 53 64.2
Carub.0004s1742 Capsella rubella HOM05D001068 ORTHO05D003875 1.2e-11 72.8 50 66.0
SalBow6G3759 Salvia bowleyana HOM05D001068 ORTHO05D003875 1.2e-11 72.8 49 69.4
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.6e-11 72.4 41 75.6
Migut.A01136 Erythranthe guttata HOM05D001068 ORTHO05D003875 1.6e-11 72.4 49 67.3
Thhalv10016360m.g Eutrema salsugineum HOM05D001068 ORTHO05D003875 1.6e-11 72.4 54 64.8
Os06g0103500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D003875 2.1e-11 72.0 49 65.3
THA.LOC104806669 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 2.1e-11 72.0 49 67.3
CARHR129930 Cardamine hirsuta HOM05D001068 ORTHO05D003875 2.7e-11 71.6 50 66.0
THA.LOC104812770 Tarenaya hassleriana HOM05D001068 ORTHO05D003875 2.7e-11 71.6 49 65.3
Sp4g17950 Schrenkiella parvula HOM05D001068 ORTHO05D003875 6.1e-11 70.5 50 68.0
arahy.Tifrunner.gnm1.ann1.MWEA9C Arachis hypogaea HOM05D001068 ORTHO05D003875 7.9e-11 70.1 49 67.3
arahy.Tifrunner.gnm1.ann1.QXG3RX Arachis hypogaea HOM05D001068 ORTHO05D003875 7.9e-11 70.1 49 67.3
MSTRG.12124 Avicennia marina HOM05D001068 ORTHO05D003875 7.9e-11 70.1 49 63.3
DCAR_027764 Daucus carota HOM05D001068 ORTHO05D003875 7.9e-11 70.1 49 67.3
DCAR_008508 Daucus carota HOM05D001068 ORTHO05D003875 1.0e-10 69.7 49 63.3
HPP92_022429 Vanilla planifolia HOM05D001068 ORTHO05D003875 1.0e-10 69.7 50 58.0
ECA233G3500 Erigeron canadensis HOM05D001068 ORTHO05D003875 3.9e-10 67.8 49 63.3
BcaB01g03886 Brassica carinata HOM05D001068 ORTHO05D003875 1.1e-09 66.2 50 62.0
DCAR_004991 Daucus carota HOM05D001068 ORTHO05D003875 4.3e-09 64.3 49 65.3
SMO358G0542 Selaginella moellendorffii HOM05D001068 ORTHO05D003875 2.8e-08 61.6 49 55.1
Aa31LG9G12100 Aethionema arabicum HOM05D001068 ORTHO05D003875 3.1e-07 58.2 42 66.7
Mapoly0169s0009 Marchantia polymorpha HOM05D001068 ORTHO05D003875 2.6e-06 55.1 49 55.1


User provided reference genes

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