Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36026 Trifolium pratense HOM05D003358 ORTHO05D003864 5.9e-73 277.3 131 100.0
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 4.4e-44 181.4 132 66.7
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 5.3e-37 157.9 131 64.1
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 5.4e-34 147.9 129 56.6
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 5.4e-34 147.9 129 56.6
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 5.4e-34 147.9 129 56.6
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 5.4e-34 147.9 129 56.6
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 9.3e-34 147.1 129 56.6
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 1.2e-33 146.7 129 55.8
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.2e-33 146.7 129 55.8
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 1.2e-33 146.7 129 57.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 1.2e-33 146.7 129 56.6
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.6e-33 146.4 129 55.0
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 1.6e-33 146.4 129 56.6
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.6e-33 146.4 129 55.8
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 2.1e-33 146.0 129 55.8
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 2.1e-33 146.0 129 55.8
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.1e-33 146.0 129 55.8
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.1e-33 146.0 129 55.8
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 2.1e-33 146.0 129 55.8
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 2.7e-33 145.6 129 54.3
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 3.5e-33 145.2 129 55.8
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 3.5e-33 145.2 129 56.6
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 4.6e-33 144.8 129 55.0
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 4.6e-33 144.8 129 55.0
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 4.6e-33 144.8 129 55.8
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 6.0e-33 144.4 129 54.3
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 7.9e-33 144.1 129 55.0
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.0e-32 143.7 129 54.3
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 1.0e-32 143.7 129 54.3
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.3e-32 143.3 129 55.0
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.7e-32 142.9 129 55.0
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 1.7e-32 142.9 129 55.0
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.7e-32 142.9 129 55.8
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 2.3e-32 142.5 130 55.4
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 2.3e-32 142.5 129 55.8
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.0e-32 142.1 129 55.8
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 3.0e-32 142.1 129 55.8
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 3.0e-32 142.1 129 55.8
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 5.1e-32 141.4 129 54.3
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 6.6e-32 141.0 129 55.0
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 6.6e-32 141.0 129 52.7
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.1e-31 140.2 129 55.0
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 1.1e-31 140.2 129 54.3
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.1e-31 140.2 129 55.0
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 1.5e-31 139.8 129 53.5
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 1.5e-31 139.8 129 55.0
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 1.5e-31 139.8 130 53.8
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 2.5e-31 139.0 129 53.5
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 3.3e-31 138.7 129 54.3
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 3.3e-31 138.7 128 53.9
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 4.3e-31 138.3 129 53.5
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 4.3e-31 138.3 129 52.7
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 5.6e-31 137.9 130 53.1
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 9.6e-31 137.1 129 53.5
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.3e-30 136.7 129 53.5
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.1e-30 136.0 129 52.7
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 2.8e-30 135.6 129 53.5
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 2.8e-30 135.6 129 53.5
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.8e-30 135.6 129 50.4
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 2.8e-30 135.6 129 52.7
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 2.8e-30 135.6 129 51.9
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 3.6e-30 135.2 129 51.9
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 3.6e-30 135.2 129 51.9
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 4.8e-30 134.8 129 51.9
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 4.8e-30 134.8 129 51.2
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 51.9
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 51.9
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 51.2
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 51.2
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 51.2
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 53.5
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 6.2e-30 134.4 129 51.2
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 8.1e-30 134.0 129 50.4
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 8.1e-30 134.0 129 51.2
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.1e-29 133.7 129 51.2
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.1e-29 133.7 129 51.2
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 1.1e-29 133.7 129 51.9
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 1.1e-29 133.7 129 51.9
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.1e-29 133.7 107 58.9
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 1.4e-29 133.3 129 51.9
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.4e-29 133.3 129 50.4
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 3.1e-29 132.1 129 51.2
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 3.1e-29 132.1 129 53.5
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 4.0e-29 131.7 129 50.4
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 5.3e-29 131.3 129 51.2
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 6.9e-29 131.0 129 50.4
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 6.9e-29 131.0 129 50.4
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 9.0e-29 130.6 129 48.8
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 9.0e-29 130.6 129 51.2
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.2e-28 130.2 129 51.9
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 1.2e-28 130.2 129 49.6
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 1.2e-28 130.2 129 51.2
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.2e-28 130.2 129 50.4
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.5e-28 129.8 129 50.4
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.5e-28 129.8 129 51.2
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.5e-28 129.8 129 50.4
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 1.5e-28 129.8 129 52.7
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.0e-28 129.4 129 50.4
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 2.6e-28 129.0 129 49.6
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 3.4e-28 128.6 130 50.8
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 3.4e-28 128.6 129 49.6
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 3.4e-28 128.6 129 50.4
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 3.4e-28 128.6 129 48.8
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 3.4e-28 128.6 129 48.8
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 4.5e-28 128.3 129 50.4
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 5.8e-28 127.9 129 49.6
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 5.8e-28 127.9 130 52.3
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 9.9e-28 127.1 129 49.6
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.3e-27 126.7 129 49.6
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 2.2e-27 125.9 107 57.0
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 3.8e-27 125.2 130 47.7
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 8.4e-27 124.0 115 51.3
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 8.4e-27 124.0 129 48.8
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.1e-26 123.6 129 49.6
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 7.1e-26 120.9 129 48.1
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 9.3e-26 120.6 130 46.2
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 9.3e-26 120.6 117 51.3
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 2.1e-25 119.4 130 46.9
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 2.1e-25 119.4 130 46.9
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 1.0e-24 117.1 130 46.9
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.3e-24 116.7 129 49.6
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-24 116.7 130 46.9
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 2.3e-24 115.9 131 45.0
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 2.3e-24 115.9 135 46.7
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.5e-23 113.2 130 46.9
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 3.3e-23 112.1 148 44.6
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 4.3e-23 111.7 133 45.1
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 1.3e-22 110.2 115 49.6
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 3.7e-22 108.6 139 46.0
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 2.4e-21 105.9 145 45.5
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 2.4e-21 105.9 128 46.9
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 4.0e-21 105.1 108 47.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 6.9e-21 104.4 130 39.2
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.6e-20 102.4 129 46.5
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 7.6e-20 100.9 118 41.5
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 1.7e-19 99.8 129 43.4
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 2.2e-19 99.4 152 38.8
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 2.2e-19 99.4 126 43.7
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 6.5e-19 97.8 135 43.0
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 1.1e-18 97.1 101 49.5
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.9e-18 96.3 135 43.7
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 3.2e-18 95.5 145 41.4
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 5.5e-18 94.7 100 48.0
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 7.1e-18 94.4 135 41.5
Aqoxy2G03211 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 9.3e-18 94.0 92 51.1
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.0e-16 90.5 99 47.5
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 5.1e-16 88.2 135 40.0
Psat6g168880 Pisum sativum HOM05D003358 ORTHO05D003864 2.1e-14 82.8 85 48.2
Atru.chr5.1347 Acer truncatum HOM05D003358 ORTHO05D003864 1.2e-12 77.0 51 68.6
Oeu011175.1 Olea europaea HOM05D000273 ORTHO05D000198 6.5e-11 71.2 99 42.4
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 8.4e-11 70.9 96 41.7
AL5G45870 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.1e-10 70.5 129 36.4
Sp5g00470 Schrenkiella parvula HOM05D003358 ORTHO05D003864 2.5e-10 69.3 51 62.7
Aqoxy4G02508 Aquilegia oxysepala HOM05D003358 ORTHO05D003864 3.2e-10 68.9 115 37.4
BolC8t51358H Brassica oleracea HOM05D003358 ORTHO05D003864 4.2e-10 68.6 51 58.8
BcaC07g42715 Brassica carinata HOM05D003358 ORTHO05D003864 9.3e-10 67.4 57 52.6
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 1.6e-09 66.6 108 37.0
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-09 66.6 108 37.0
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 2.7e-09 65.9 100 39.0
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 4.6e-09 65.1 110 35.5
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 4.6e-09 65.1 107 36.4
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 6.1e-09 64.7 96 37.5
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 6.1e-09 64.7 96 37.5
Carub.0005s1267 Capsella rubella HOM05D003358 ORTHO05D003864 6.1e-09 64.7 129 34.1
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 7.9e-09 64.3 103 41.7
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.5e-07 60.1 103 33.0
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 2.5e-07 59.3 105 40.0
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 7.4e-07 57.8 99 38.4
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 9.7e-07 57.4 104 39.4
DCAR_018399 Daucus carota HOM05D000027 ORTHO05D003864 9.7e-07 57.4 123 32.5
Lsat_1_v5_gn_8_134981 Lactuca sativa HOM05D003358 ORTHO05D003864 9.7e-07 57.4 86 36.0
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-06 57.0 107 38.3
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 1.3e-06 57.0 107 38.3
THA.LOC104820691 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.3e-06 57.0 92 37.0
C03p05680 Brassica napus HOM05D026960 ORTHO05D031882 3.7e-06 55.5 93 37.6
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 4.8e-06 55.1 88 36.4


User provided reference genes

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