Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 0.0e+00 1246.1 636 100.0
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 7.9e-296 1020.0 660 81.7
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 1.9e-281 972.2 647 80.2
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 2.0e-275 952.2 616 82.0
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 1.5e-262 909.4 640 76.1
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 7.4e-262 907.1 638 76.2
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 9.7e-262 906.7 638 75.5
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 4.0e-255 884.8 647 74.8
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 1.5e-254 882.9 642 74.6
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 4.0e-239 831.6 661 69.4
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-235 820.1 676 68.2
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.8e-234 815.1 680 66.9
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 5.0e-226 788.1 667 66.4
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 2.4e-220 769.2 679 63.3
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 9.2e-220 767.3 677 63.5
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 7.3e-217 757.7 649 63.8
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.7e-213 746.5 649 62.7
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.6e-211 740.0 663 62.1
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.3e-210 736.9 645 62.2
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 8.6e-210 734.2 715 59.2
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.5e-209 732.6 649 61.6
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 9.5e-209 730.7 642 61.5
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 1.4e-207 726.9 641 61.2
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 2.6e-206 722.6 651 61.3
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 7.6e-206 721.1 652 61.8
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.3e-205 720.3 650 62.5
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.2e-205 719.5 667 60.0
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 4.6e-203 711.8 674 58.9
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 1.7e-202 709.9 655 61.8
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.7e-202 709.9 665 59.2
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 2.3e-202 709.5 676 59.5
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.5e-201 706.8 655 60.8
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.5e-201 706.1 653 60.3
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.4e-199 699.5 673 58.2
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.9e-197 692.6 656 58.7
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.4e-197 691.0 549 65.6
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.6e-195 686.8 647 58.4
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.6e-195 686.8 680 57.5
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 1.0e-194 684.1 680 57.4
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 3.9e-194 682.2 641 59.3
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 1.9e-193 679.9 641 59.0
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.4e-191 672.9 672 57.0
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 4.0e-191 672.2 449 75.5
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 2.0e-190 669.8 676 57.8
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.7e-189 666.8 510 67.6
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 3.8e-189 665.6 646 58.2
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-188 663.7 667 56.4
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.9e-188 663.3 661 58.7
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 5.4e-188 661.8 570 63.0
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 2.3e-186 656.4 647 58.1
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.1e-185 654.1 658 56.1
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 4.3e-185 652.1 514 67.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 7.4e-185 651.4 425 75.5
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 4.8e-184 648.7 664 55.9
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 1.2e-182 644.0 673 55.7
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 2.9e-181 639.4 661 56.4
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 3.8e-181 639.0 667 57.6
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 6.4e-181 638.3 419 75.4
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 4.2e-180 635.6 657 53.9
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 2.7e-179 632.9 658 54.4
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 3.5e-179 632.5 650 56.2
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 1.0e-178 630.9 658 54.1
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.8e-178 630.2 662 53.2
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 5.1e-178 628.6 664 53.8
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 5.1e-178 628.6 657 55.6
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 3.3e-177 625.9 663 55.5
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 1.4e-175 620.5 659 54.2
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 1.2e-174 617.5 523 63.7
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 3.4e-174 615.9 598 59.0
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 9.3e-172 607.8 656 53.2
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.7e-170 601.3 592 57.1
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.1e-169 600.9 652 52.6
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 1.6e-168 597.0 498 64.7
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 2.1e-168 596.7 502 62.9
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 1.1e-167 594.3 441 68.9
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.1e-167 594.3 637 53.5
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.4e-167 594.0 686 52.3
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.8e-167 593.6 450 67.1
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.4e-167 593.2 592 57.3
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 6.9e-167 591.7 567 57.5
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 4.2e-164 582.4 619 53.8
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 6.1e-163 578.6 690 48.8
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 7.9e-163 578.2 670 50.9
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.4e-156 557.4 653 50.4
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.4e-156 557.4 387 71.3
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 4.6e-155 552.4 651 49.6
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 1.8e-154 550.4 491 61.7
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.7e-152 543.9 487 60.8
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 2.3e-146 523.5 512 57.8
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-145 520.8 553 56.6
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 5.3e-143 512.3 510 56.5
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 1.2e-142 511.1 503 58.8
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 6.5e-141 505.4 439 62.2
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 3.3e-137 493.0 659 46.0
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 2.2e-136 490.3 476 56.1
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.1e-135 488.0 614 47.6
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.3e-128 464.5 461 52.7
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 8.3e-128 461.8 444 57.2
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.3e-120 438.0 313 71.6
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 1.3e-117 427.9 519 45.7
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.6e-115 419.9 553 51.0
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 2.6e-113 413.7 614 42.7
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.6e-113 413.7 788 38.8
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.1e-111 408.3 377 57.8
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 1.5e-108 397.9 620 41.8
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 7.0e-103 379.0 287 68.3
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.6e-102 377.9 575 45.4
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 5.0e-101 372.9 440 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 3.8e-88 330.1 366 48.9
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 5.4e-87 326.2 197 81.7
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 2.1e-86 324.3 422 49.1
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 3.9e-85 320.1 401 47.6
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 7.3e-84 315.8 213 69.5
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.6e-83 314.7 413 48.2
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 8.1e-83 312.4 171 88.3
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.4e-81 306.6 434 41.0
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 5.1e-77 293.1 295 56.3
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.3e-76 290.0 350 47.7
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 4.9e-72 276.6 166 80.7
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.1e-66 258.8 164 76.2
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 5.8e-65 253.1 166 71.7
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.9e-64 250.8 324 48.5
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 3.8e-64 250.4 188 70.2
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 4.2e-63 246.9 365 40.3
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 7.9e-62 242.7 496 38.7
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 2.6e-57 227.6 180 60.6
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 1.4e-55 221.9 124 83.1
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.1e-52 212.2 145 71.7
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 8.2e-51 206.1 205 57.1
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.7e-46 191.0 332 42.5
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.3e-45 188.0 153 66.7
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.3e-43 182.2 165 64.8
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.2e-43 179.5 145 62.8
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.1e-39 169.1 404 30.7
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-39 168.7 142 62.7
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 5.5e-39 166.8 436 30.5
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 1.5e-36 158.7 148 56.8
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.7e-36 156.8 153 58.2
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-34 152.1 87 85.1
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 4.5e-33 147.1 239 38.9
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 4.5e-33 147.1 239 38.9
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 5.5e-31 140.2 283 36.0
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 4.7e-30 137.1 92 73.9
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.7e-28 130.2 239 45.2
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 2.0e-25 121.7 347 27.4
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 2.6e-25 121.3 69 79.7
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 4.2e-23 114.0 69 71.0
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 7.2e-23 113.2 115 52.2
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 7.2e-23 113.2 115 52.2
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 7.2e-23 113.2 115 52.2
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 7.2e-23 113.2 115 52.2
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-22 112.5 107 56.1
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 1.2e-22 112.5 303 31.4
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 4.7e-22 110.5 122 57.4
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-21 108.2 109 52.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 3.3e-20 104.4 82 68.3
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.6e-17 95.5 303 30.4
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 1.3e-16 92.4 58 81.0
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 5.0e-16 90.5 54 75.9
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 2.5e-15 88.2 160 35.0
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.0e-13 82.8 102 46.1
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 5.2e-13 80.5 61 62.3
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 5.2e-13 80.5 93 49.5
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 9.8e-12 76.3 51 78.4
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 8.3e-11 73.2 58 72.4
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.1e-10 72.8 81 48.1
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.6e-09 68.9 57 68.4
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 2.0e-09 68.6 40 82.5
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 2.0e-09 68.6 46 60.9
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 2.0e-09 68.6 46 60.9
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 2.7e-09 68.2 46 60.9
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 1.0e-08 66.2 36 80.6
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 3.8e-08 64.3 39 76.9
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.1e-07 62.8 217 30.9
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 2.5e-07 61.6 52 63.5
arahy.Tifrunner.gnm1.ann1.35E9MG Arachis hypogaea HOM05D003836 ORTHO05D004556 4.2e-07 60.8 46 58.7
arahy.Tifrunner.gnm1.ann1.WQ8HS1 Arachis hypogaea HOM05D001110 ORTHO05D082228 4.7e-06 57.4 33 75.8
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 4.7e-06 57.4 53 47.2


User provided reference genes

Program Settings