Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.3e-216 756.5 508 100.0
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.9e-183 646.4 508 84.8
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 3.1e-178 629.0 508 84.3
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 4.4e-172 608.6 508 80.5
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 3.0e-165 585.9 510 77.1
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.5e-164 583.6 508 79.3
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.8e-162 576.6 507 74.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.7e-147 526.9 505 76.0
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.3e-144 517.3 508 59.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 8.9e-133 478.0 510 60.0
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-132 477.2 508 74.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 3.7e-131 472.6 508 64.4
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 2.1e-129 466.8 530 56.8
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.2e-126 457.6 512 60.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.0e-125 452.6 524 53.8
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.2e-125 452.2 513 60.6
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.6e-124 449.9 513 62.2
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 3.7e-123 446.0 513 61.0
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.9e-122 443.7 513 61.8
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.2e-122 443.0 512 61.3
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.1e-122 442.6 517 56.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.7e-121 439.9 513 61.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 3.5e-121 439.5 513 51.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.0e-120 436.4 520 52.7
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.0e-120 436.4 525 53.9
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.5e-119 434.1 525 55.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 5.6e-119 432.2 511 54.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.1e-118 430.3 510 60.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 3.1e-117 426.4 540 49.1
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 6.8e-117 425.2 518 51.0
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.0e-116 423.7 522 52.3
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.4e-116 422.5 511 51.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.2e-115 420.2 520 55.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 4.2e-114 416.0 519 53.8
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 7.1e-114 415.2 511 53.8
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.7e-113 413.3 510 50.6
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 6.0e-113 412.1 507 53.3
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.7e-112 410.6 540 47.6
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.7e-112 410.6 540 47.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.3e-112 410.2 540 47.8
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 5.1e-112 409.1 512 60.9
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.1e-112 409.1 521 53.9
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 7.3e-111 405.2 514 51.2
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.6e-110 404.1 518 53.1
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 3.6e-110 402.9 485 70.5
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.6e-110 402.9 523 53.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 8.1e-110 401.7 522 52.3
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-109 401.4 518 53.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.4e-109 400.2 517 49.3
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.0e-109 399.4 526 49.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 5.3e-109 399.1 533 50.8
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.2e-108 397.9 521 51.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.2e-108 397.9 513 52.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 9.9e-108 394.8 518 52.9
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 9.9e-108 394.8 516 52.5
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.7e-107 394.0 514 48.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.9e-107 393.3 529 53.7
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.8e-107 392.9 512 48.2
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.4e-107 392.1 522 53.8
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.6e-105 387.5 513 53.4
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 2.7e-105 386.7 512 51.0
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.5e-105 386.3 568 45.4
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.8e-105 385.2 516 52.1
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.9e-103 380.6 536 49.4
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.8e-102 376.7 548 45.8
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.8e-102 376.7 531 49.9
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.4e-101 374.4 510 50.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 4.0e-101 372.9 537 46.4
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 9.0e-101 371.7 517 52.4
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.5e-100 370.9 511 49.9
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.0e-100 370.5 513 50.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.3e-99 367.9 520 45.6
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.2e-99 367.1 511 49.9
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 3.8e-99 366.3 508 47.2
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 4.9e-99 365.9 514 47.1
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 8.4e-99 365.2 520 45.4
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.1e-98 364.8 522 45.4
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.9e-98 364.0 526 45.8
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.4e-98 363.6 522 45.6
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.4e-98 363.6 525 46.1
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 3.2e-98 363.2 512 50.0
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.4e-98 362.5 511 48.7
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 3.5e-97 359.8 525 49.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 6.0e-97 359.0 518 46.1
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 6.0e-97 359.0 509 51.9
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.5e-95 354.4 523 45.7
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.8e-94 350.1 521 52.8
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.7e-94 349.7 521 48.9
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 8.1e-94 348.6 512 49.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.6e-92 343.6 531 44.6
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.4e-90 337.8 517 52.0
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.2e-90 336.7 524 44.1
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 4.2e-90 336.3 514 45.3
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 5.5e-90 335.9 525 43.8
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 5.5e-90 335.9 501 47.7
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.5e-89 333.2 522 47.1
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.5e-87 327.8 481 49.1
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.4e-85 321.2 518 42.5
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.2e-84 318.2 512 51.6
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.0e-83 315.1 527 42.1
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.1e-82 311.6 479 43.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 4.2e-82 309.7 518 42.1
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.5e-82 309.3 506 43.5
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.1e-81 307.4 476 50.2
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 3.5e-81 306.6 198 77.8
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.1e-77 293.5 539 40.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.5e-76 291.2 171 83.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.6e-76 290.4 519 39.9
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 6.5e-75 285.8 476 48.5
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 4.6e-73 279.6 217 68.2
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 6.1e-73 279.3 532 38.2
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.8e-70 269.6 182 74.2
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.1e-69 268.5 478 40.4
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 9.1e-69 265.4 548 42.5
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 3.2e-66 256.9 533 40.3
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 5.5e-66 256.1 513 41.3
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 7.2e-66 255.8 453 45.5
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 5.1e-64 249.6 497 37.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.0e-63 247.7 456 40.6
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 4.2e-58 229.9 173 71.7
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.8e-56 222.2 128 83.6
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.5e-50 204.9 453 36.9
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.0e-48 198.7 419 38.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 9.1e-45 185.7 567 31.7
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.9e-42 177.9 277 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.0e-40 172.2 462 33.1
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.4e-37 159.8 158 53.2
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.2e-33 148.7 170 48.2
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 7.5e-31 139.4 147 47.6
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.7e-30 138.3 477 30.4
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.3e-26 123.6 477 29.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.2e-25 122.1 82 72.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 4.7e-25 120.2 65 90.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.4e-24 118.6 158 46.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.8e-23 112.5 102 60.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.0e-19 102.4 97 58.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 6.8e-16 89.7 62 74.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 6.8e-16 89.7 62 74.2
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.7e-14 84.0 153 36.6
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-13 81.6 142 45.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.1e-12 78.2 48 77.1
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 3.5e-12 77.4 112 42.0
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 3.5e-12 77.4 112 42.0
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.8e-12 76.3 50 70.0
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.2e-09 68.9 90 47.8
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 2.2e-06 58.2 126 31.7
Rhsim01G0186600 Rhododendron simsii HOM05D000230 ORTHO05D000176 2.2e-06 58.2 133 29.3
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 2.9e-06 57.8 126 28.6
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 2.9e-06 57.8 126 28.6
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 2.9e-06 57.8 126 28.6
Sp3g23340 Schrenkiella parvula HOM05D000230 ORTHO05D000176 3.7e-06 57.4 124 26.6
TPR.G37378 Trifolium pratense HOM05D000230 ORTHO05D000176 3.7e-06 57.4 126 31.7
Ah.06g193150 Amaranthus hybridus HOM05D000230 ORTHO05D000176 4.9e-06 57.0 126 28.6
Sc16g0011980 Simmondsia chinensis HOM05D000230 ORTHO05D000176 6.4e-06 56.6 123 27.6
Dinv24353 Davidia involucrata HOM05D000230 ORTHO05D000176 8.4e-06 56.2 126 32.5
QL04p000645 Quercus lobata HOM05D000230 ORTHO05D000176 8.4e-06 56.2 125 30.4
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 8.4e-06 56.2 119 29.4


User provided reference genes

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