Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35214 Trifolium pratense HOM05D026687 ORTHO05D016918 3.3e-44 181.4 98 100.0
TPR.G7711 Trifolium pratense HOM05D026687 ORTHO05D016918 1.7e-35 152.5 99 87.9
TPR.G35212 Trifolium pratense HOM05D026687 ORTHO05D016918 3.7e-35 151.4 101 85.1
TPR.G18119 Trifolium pratense HOM05D026687 ORTHO05D016918 2.2e-32 142.1 98 82.7
TPR.G11499 Trifolium pratense HOM05D000032 ORTHO05D006669 1.1e-26 123.2 101 78.2
Medtr2g041140 Medicago truncatula HOM05D000032 ORTHO05D006669 2.6e-20 102.1 102 66.7
Ca_14808_v3 Cicer arietinum L. HOM05D000032 ORTHO05D006669 5.9e-17 90.9 103 67.0
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 3.2e-15 85.1 101 64.4
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 5.5e-15 84.3 101 63.4
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 2.7e-14 82.0 72 73.6
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 3.6e-14 81.6 101 58.4
Lj6g0002233 Lotus japonicus HOM05D000032 ORTHO05D006669 1.8e-13 79.3 102 58.8
Lalb_Chr20g0113951 Lupinus albus HOM05D000032 ORTHO05D006669 1.2e-12 76.6 97 59.8
Psat5g176240 Pisum sativum HOM05D000032 ORTHO05D006669 3.4e-12 75.1 69 72.5
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 2.2e-11 72.4 95 56.8
CiPaw.07G148200 Carya illinoinensis HOM05D000032 ORTHO05D006669 2.8e-11 72.0 94 56.4
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 2.8e-11 72.0 99 57.6
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 2.8e-11 72.0 92 57.6
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 2.8e-11 72.0 94 58.5
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 3.7e-11 71.6 101 52.5
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 6.3e-11 70.9 93 57.0
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 1.8e-10 69.3 93 50.5
Lj6g0027027 Lotus japonicus HOM05D000032 ORTHO05D006669 1.8e-10 69.3 102 52.0
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 2.4e-10 68.9 92 55.4
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 2.4e-10 68.9 93 52.7
Gorai.009G193900 Gossypium raimondii HOM05D000032 ORTHO05D006669 3.1e-10 68.6 92 55.4
Migut.C00853 Erythranthe guttata HOM05D000032 ORTHO05D006669 4.1e-10 68.2 92 54.3
Duzib093G1385 Durio zibethinus HOM05D000032 ORTHO05D006669 5.4e-10 67.8 92 55.4
Potri.002G020101 Populus trichocarpa HOM05D000032 ORTHO05D016918 1.2e-09 66.6 91 52.7
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 1.6e-09 66.2 97 52.6
QL02p011979 Quercus lobata HOM05D000032 ORTHO05D006669 1.6e-09 66.2 96 55.2
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 2.0e-09 65.9 89 53.9
MELO3C003842.2 Cucumis melo HOM05D000032 ORTHO05D006669 2.7e-09 65.5 90 54.4
CsaV3_3G045070 Cucumis sativus L. HOM05D000032 ORTHO05D006669 2.7e-09 65.5 90 54.4
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 2.7e-09 65.5 92 53.3
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 2.7e-09 65.5 102 49.0
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 3.5e-09 65.1 93 54.8
Gohir.D05G188600 Gossypium hirsutum HOM05D000032 ORTHO05D006669 4.5e-09 64.7 92 53.3
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 4.5e-09 64.7 94 52.1
TPR.G35215 Trifolium pratense HOM05D001217 ORTHO05D016918 5.9e-09 64.3 58 72.4
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 7.7e-09 63.9 92 53.3
Lsat_1_v5_gn_8_10200 Lactuca sativa HOM05D000032 ORTHO05D006669 7.7e-09 63.9 95 48.4
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 1.0e-08 63.5 94 55.3
arahy.Tifrunner.gnm1.ann1.CZI2M2 Arachis hypogaea HOM05D000032 ORTHO05D006669 1.3e-08 63.2 65 63.1
arahy.Tifrunner.gnm1.ann1.KG3JNQ Arachis hypogaea HOM05D000032 ORTHO05D006669 1.3e-08 63.2 65 63.1
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 1.3e-08 63.2 92 52.2
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 1.3e-08 63.2 92 53.3
PGR042G0181 Punica granatum HOM05D000032 ORTHO05D006669 1.3e-08 63.2 90 52.2
Cc10_g01510 Coffea canephora HOM05D000032 ORTHO05D016918 1.7e-08 62.8 94 54.3
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 1.7e-08 62.8 101 48.5
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 2.9e-08 62.0 93 51.6
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 3.8e-08 61.6 95 50.5
Cpa.g.sc29.166 Carica papaya HOM05D000032 ORTHO05D006669 6.5e-08 60.8 93 48.4
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 8.5e-08 60.5 93 48.4
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 8.5e-08 60.5 93 48.4
QL12p004290 Quercus lobata HOM05D000032 ORTHO05D006669 1.5e-07 59.7 96 53.1
PGSC0003DMG400009873 Solanum tuberosum HOM05D000032 ORTHO05D006669 1.9e-07 59.3 101 48.5
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 2.5e-07 58.9 102 47.1
Hma1.2p1_0274F.1_g110360 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 3.2e-07 58.5 67 58.2
CANSAT64G1040 Cannabis sativa HOM05D000032 ORTHO05D006669 7.2e-07 57.4 90 51.1
ClCG09G010550 Citrullus lanatus HOM05D000032 ORTHO05D006669 9.4e-07 57.0 93 51.6
EL10Ac1g02170 Beta vulgaris HOM05D000032 ORTHO05D006669 1.6e-06 56.2 94 45.7
MD01G1061100 Malus domestica HOM05D000032 ORTHO05D006669 1.6e-06 56.2 90 52.2
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 2.1e-06 55.8 93 47.3
TPR.G35954 Trifolium pratense HOM05D000230 ORTHO05D016918 4.7e-06 54.7 41 78.0
arahy.Tifrunner.gnm1.ann1.B7U3FX Arachis hypogaea HOM05D002394 ORTHO05D002508 8.0e-06 53.9 62 58.1
HanXRQChr13g0412281 Helianthus annuus HOM05D000032 ORTHO05D006669 8.0e-06 53.9 90 44.4


User provided reference genes

Program Settings