Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 3.6e-183 644.8 334 100.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.6e-159 566.2 389 78.9
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 8.1e-151 537.3 390 75.4
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 1.4e-134 483.4 390 69.2
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 2.0e-133 479.6 390 66.7
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 2.1e-130 469.5 392 65.1
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 3.7e-127 458.8 390 63.3
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 4.8e-127 458.4 390 63.6
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 6.5e-124 448.0 391 64.5
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 1.1e-120 437.2 390 62.8
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 2.0e-117 426.4 390 61.8
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 1.1e-115 420.6 390 63.3
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 6.3e-111 404.8 390 55.4
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 7.7e-109 397.9 388 54.4
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.9e-108 396.0 367 57.2
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 8.5e-108 394.4 390 55.9
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 8.5e-108 394.4 390 55.9
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 3.2e-107 392.5 390 53.8
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 9.4e-107 391.0 390 55.1
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 3.6e-106 389.0 390 53.6
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 8.0e-106 387.9 390 53.6
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 1.0e-105 387.5 390 53.6
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 2.3e-105 386.3 390 54.4
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 4.0e-105 385.6 390 52.6
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 1.4e-102 377.1 386 53.1
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 1.8e-102 376.7 390 53.1
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 1.8e-102 376.7 390 53.3
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 3.1e-102 375.9 390 52.1
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 3.1e-102 375.9 386 54.1
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 5.3e-102 375.2 390 53.1
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 5.3e-102 375.2 391 53.2
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 7.0e-102 374.8 390 53.3
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 1.2e-101 374.0 393 51.9
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 7.7e-101 371.3 391 52.2
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 1.3e-100 370.5 386 51.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 3.8e-100 369.0 390 52.6
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.5e-100 368.2 407 50.9
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 1.5e-99 367.1 390 51.5
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 1.9e-99 366.7 390 52.8
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 7.2e-99 364.8 390 51.3
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 9.4e-99 364.4 390 50.3
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 1.6e-98 363.6 390 51.8
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 8.0e-98 361.3 403 51.4
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 1.0e-97 360.9 390 51.8
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 1.4e-97 360.5 390 51.0
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 1.8e-97 360.1 389 50.6
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 1.5e-96 357.1 389 49.9
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 2.6e-96 356.3 380 51.6
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 2.8e-95 352.8 390 48.7
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.4e-94 350.5 431 46.2
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 5.4e-94 348.6 390 49.0
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 7.0e-94 348.2 391 50.1
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 4.5e-93 345.5 390 48.5
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 1.0e-92 344.4 390 48.2
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 1.7e-92 343.6 432 47.2
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 2.9e-92 342.8 390 48.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 5.0e-92 342.0 383 50.4
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 6.5e-92 341.7 390 49.0
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 8.5e-92 341.3 386 49.7
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 2.5e-91 339.7 390 47.7
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 7.2e-91 338.2 390 47.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 7.2e-91 338.2 390 47.4
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.2e-90 337.4 384 48.4
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 2.7e-90 336.3 383 48.8
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 8.0e-90 334.7 214 85.0
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 8.0e-90 334.7 214 85.0
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 1.8e-89 333.6 390 47.2
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 4.0e-89 332.4 390 46.9
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 8.8e-89 331.3 389 47.3
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 1.2e-88 330.9 354 51.1
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.5e-88 330.5 387 49.4
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 2.6e-88 329.7 390 48.2
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 3.4e-88 329.3 389 47.0
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 3.4e-88 329.3 390 46.7
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 5.7e-88 328.6 387 49.1
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 7.5e-88 328.2 390 46.7
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 9.8e-88 327.8 387 48.8
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 9.8e-88 327.8 387 49.1
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 6.3e-87 325.1 390 48.2
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.8e-86 323.6 387 48.6
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 2.4e-86 323.2 390 47.4
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 7.0e-86 321.6 389 45.8
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 3.5e-85 319.3 386 43.8
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 3.5e-85 319.3 386 44.0
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.0e-84 315.5 390 45.6
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 1.1e-83 314.3 393 46.3
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.9e-83 313.5 390 45.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.5e-83 313.2 393 47.3
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 1.6e-82 310.5 359 49.3
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 1.4e-81 307.4 386 46.4
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 5.7e-80 302.0 390 46.4
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 9.8e-80 301.2 390 43.8
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 1.7e-79 300.4 390 44.1
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 1.7e-79 300.4 388 43.6
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 1.2e-77 294.3 407 42.8
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 1.7e-76 290.4 392 44.1
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.4e-72 275.8 312 49.4
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 1.2e-69 267.7 389 40.4
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.3e-63 247.7 393 36.4
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 1.1e-46 191.4 359 35.7
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 4.2e-46 189.5 390 31.0
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 2.1e-45 187.2 390 30.0
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 2.3e-44 183.7 129 66.7
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 2.4e-41 173.7 388 30.7
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 6.4e-39 165.6 199 47.7
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 5.4e-38 162.5 391 29.4
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 8.1e-34 148.7 292 33.2
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 4.0e-25 119.8 383 25.6
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 1.4e-17 94.7 50 80.0
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 1.4e-17 94.7 368 25.3
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 1.8e-12 77.8 92 43.5
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.1e-11 75.1 85 49.4
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.5e-11 73.9 92 42.4
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 4.3e-11 73.2 59 59.3
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.3e-10 71.6 59 57.6
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.2e-10 70.9 75 42.7
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.4e-06 58.2 72 44.4


User provided reference genes

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