Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 6.3e-140 500.7 251 100.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 6.2e-111 404.4 243 81.5
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.6e-109 399.1 205 97.1
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 5.1e-105 384.8 251 78.1
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 5.1e-105 384.8 251 78.9
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.4e-99 365.9 251 76.1
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.4e-99 365.9 251 76.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.8e-95 352.4 252 70.6
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.4e-94 349.4 252 70.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 3.1e-94 349.0 252 71.8
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.9e-92 342.4 252 69.0
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 3.8e-92 342.0 252 70.2
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.1e-87 326.2 252 67.5
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 4.2e-83 312.0 253 65.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.4e-59 233.8 252 53.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 4.2e-59 232.3 251 54.6
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.7e-58 229.6 253 51.8
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 3.0e-57 226.1 255 50.2
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.9e-57 225.7 254 50.8
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.0e-56 223.4 255 50.6
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.7e-55 219.2 255 48.2
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 3.1e-54 216.1 255 47.5
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.0e-53 213.4 241 50.6
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 5.9e-53 211.8 254 48.4
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.7e-52 210.3 255 49.0
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.8e-52 209.1 251 48.6
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.9e-51 206.8 256 47.3
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.6e-50 203.8 254 48.0
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.8e-49 200.3 254 47.6
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.7e-49 198.4 254 46.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.1e-48 197.6 243 47.7
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.0e-48 196.8 254 46.9
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 3.3e-48 196.1 252 46.0
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 5.7e-48 195.3 255 45.5
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.7e-48 195.3 255 45.5
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 7.4e-48 194.9 246 48.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.3e-47 194.1 252 45.6
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.7e-47 192.6 244 43.9
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.7e-47 192.6 252 45.2
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 3.7e-47 192.6 255 44.7
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-46 191.0 254 46.1
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 4.1e-46 189.1 251 46.6
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 9.1e-46 188.0 254 44.1
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.6e-45 187.2 238 46.6
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.6e-45 187.2 245 46.1
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.0e-45 186.8 254 45.7
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-45 186.4 255 45.1
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 3.5e-45 186.0 252 45.6
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 5.9e-45 185.3 254 45.3
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.7e-45 184.9 252 44.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.2e-44 183.3 254 45.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.2e-44 183.3 254 45.3
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 2.9e-44 183.0 244 46.7
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.9e-44 183.0 255 45.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.5e-44 181.4 253 44.7
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.5e-43 180.6 265 43.0
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.5e-43 179.9 261 42.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 4.2e-43 179.1 254 42.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 5.5e-43 178.7 254 44.9
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 5.5e-43 178.7 254 44.9
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.2e-43 178.3 268 42.5
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.2e-43 178.3 268 42.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.2e-42 177.6 248 42.7
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 3.6e-42 176.0 243 42.4
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 8.0e-42 174.9 250 40.8
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 8.0e-42 174.9 250 40.8
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.0e-41 174.5 237 42.6
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.4e-41 174.1 254 41.7
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.3e-41 173.3 253 41.9
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 5.2e-41 172.2 256 41.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 5.2e-41 172.2 256 40.6
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 6.7e-41 171.8 251 39.8
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.8e-41 171.4 249 43.4
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 8.8e-41 171.4 255 43.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.5e-40 170.6 262 40.1
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.4e-40 169.1 254 40.6
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.2e-39 166.8 247 39.7
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 3.7e-39 166.0 239 46.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 8.2e-39 164.9 248 43.1
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 3.1e-38 162.9 250 43.2
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 9.1e-38 161.4 247 41.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 5.9e-37 158.7 249 41.4
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.9e-36 156.4 268 38.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.9e-36 156.4 237 42.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.0e-36 155.6 237 41.8
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 6.5e-36 155.2 257 39.7
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 6.5e-36 155.2 260 39.6
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 6.5e-36 155.2 255 40.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 8.5e-36 154.8 245 40.8
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.5e-35 154.1 257 39.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.5e-35 153.3 248 40.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 3.2e-35 152.9 258 40.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 4.2e-35 152.5 245 41.6
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 4.2e-35 152.5 245 41.6
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 4.2e-35 152.5 245 41.6
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 5.5e-35 152.1 248 40.7
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 7.2e-35 151.8 248 39.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.2e-35 151.8 174 50.0
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 9.4e-35 151.4 245 40.0
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 9.4e-35 151.4 245 40.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.6e-34 150.6 236 39.8
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.7e-34 149.8 260 39.2
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.6e-34 149.4 243 42.8
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 4.7e-34 149.1 244 39.3
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.1e-34 148.7 257 38.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 8.0e-34 148.3 249 38.2
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.8e-33 147.1 239 38.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.8e-33 145.2 257 37.4
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 6.8e-33 145.2 258 36.8
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 8.8e-33 144.8 243 39.5
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 2.0e-32 143.7 244 37.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.0e-32 143.7 246 38.2
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.6e-32 143.3 242 38.0
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 3.4e-32 142.9 255 39.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.2e-31 140.2 255 38.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.2e-31 140.2 241 39.8
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.1e-30 137.9 266 34.2
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 5.4e-30 135.6 136 60.3
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 7.0e-30 135.2 218 41.3
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 9.1e-30 134.8 260 35.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.0e-28 131.3 211 41.2
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 8.0e-26 121.7 198 42.4
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 5.2e-25 119.0 199 37.7
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 8.8e-25 118.2 235 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 4.5e-21 105.9 276 27.9
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 5.6e-19 99.0 128 43.8
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 7.3e-19 98.6 296 28.0
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.4e-17 94.4 205 32.7
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 8.9e-17 91.7 219 32.0
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 1.7e-15 87.4 253 27.7
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.8e-14 84.0 112 47.3
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 3.3e-11 73.2 240 27.1
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-09 67.0 40 70.0
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.2e-09 65.9 53 58.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 9.8e-08 61.6 52 44.2
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.7e-07 59.7 87 43.7
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.4e-06 57.8 55 41.8
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.4e-06 57.8 55 52.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 7.0e-06 55.5 67 44.8
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.0e-06 55.5 38 68.4


User provided reference genes

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